Wall clock time and date at job start Tue Mar 31 2020 23:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47519 * 2 1 4 4 H 1.09004 * 109.46837 * 304.99889 * 3 2 1 5 5 C 1.50698 * 109.47429 * 185.00100 * 3 2 1 6 6 H 1.07995 * 120.00508 * 239.99762 * 5 3 2 7 7 C 1.37881 * 119.99847 * 59.99803 * 5 3 2 8 8 N 1.31513 * 119.99996 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 119.99891 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47133 * 90.00125 * 9 7 5 11 11 H 1.48500 * 109.47390 * 209.99979 * 9 7 5 12 12 H 1.48507 * 109.47387 * 329.99980 * 9 7 5 13 13 N 1.46501 * 109.47322 * 64.99900 * 3 2 1 14 14 C 1.34779 * 119.99811 * 275.00827 * 13 3 2 15 15 O 1.21595 * 120.00176 * 359.97438 * 14 13 3 16 16 C 1.47436 * 119.99676 * 180.02562 * 14 13 3 17 17 C 1.39736 * 120.20733 * 354.07985 * 16 14 13 18 18 C 1.37746 * 119.92464 * 179.77027 * 17 16 14 19 19 C 1.38614 * 120.35258 * 0.51395 * 18 17 16 20 20 S 1.76197 * 119.78950 * 179.72373 * 19 18 17 21 21 O 1.42099 * 104.27930 * 26.08599 * 20 19 18 22 22 O 1.42102 * 104.27893 * 153.94804 * 20 19 18 23 23 C 1.81404 * 104.44579 * 270.01980 * 20 19 18 24 24 C 1.53005 * 109.47006 * 180.02562 * 23 20 19 25 25 C 1.37961 * 120.42061 * 359.73715 * 19 18 17 26 26 C 1.38955 * 120.06513 * 0.02562 * 25 19 18 27 27 N 1.38868 * 120.17657 * 179.97438 * 26 25 19 28 28 H 1.08995 * 109.47219 * 60.00170 * 1 2 3 29 29 H 1.09003 * 109.46824 * 300.00077 * 1 2 3 30 30 H 1.09000 * 109.46990 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47458 * 120.00314 * 2 1 3 32 32 H 1.09000 * 109.47063 * 239.99467 * 2 1 3 33 33 H 0.97008 * 119.99821 * 179.97438 * 8 7 5 34 34 H 0.96995 * 120.00008 * 95.00619 * 13 3 2 35 35 H 1.07998 * 120.03754 * 359.97438 * 17 16 14 36 36 H 1.07996 * 119.82585 * 180.25397 * 18 17 16 37 37 H 1.09005 * 109.46985 * 299.99525 * 23 20 19 38 38 H 1.08995 * 109.47517 * 59.99862 * 23 20 19 39 39 H 1.08997 * 109.46514 * 179.97438 * 24 23 20 40 40 H 1.08992 * 109.46739 * 299.99687 * 24 23 20 41 41 H 1.08996 * 109.47255 * 60.00071 * 24 23 20 42 42 H 1.07995 * 119.96511 * 180.02562 * 25 19 18 43 43 H 0.97001 * 120.00553 * 185.59441 * 27 26 25 44 44 H 0.97006 * 119.99757 * 5.58420 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4442 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1433 0.8783 -1.2280 8 7 3.4062 0.3365 -2.1729 9 14 6.0049 0.8811 -1.3819 10 1 6.5548 -0.3503 -0.7603 11 1 6.3829 0.9222 -2.8174 12 1 6.5570 2.0737 -0.6903 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6644 1.3669 15 8 -0.3413 2.6325 0.4317 16 6 0.0454 3.3241 2.6265 17 6 0.8828 3.2579 3.7432 18 6 0.5151 3.8804 4.9157 19 6 -0.6876 4.5645 4.9982 20 16 -1.1466 5.3493 6.5076 21 8 0.0908 5.6251 7.1495 22 8 -2.0142 6.4007 6.1062 23 6 -2.0660 4.0775 7.4175 24 6 -2.5247 4.6441 8.7627 25 6 -1.5277 4.6347 3.9062 26 6 -1.1718 4.0172 2.7133 27 7 -2.0160 4.0859 1.6128 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 3.8292 -0.0614 -2.9499 34 1 2.2720 2.1232 1.9977 35 1 1.8187 2.7221 3.6861 36 1 1.1654 3.8317 5.7765 37 1 -2.9364 3.7727 6.8363 38 1 -1.4219 3.2147 7.5869 39 1 -3.0775 3.8801 9.3092 40 1 -1.6547 4.9493 9.3440 41 1 -3.1690 5.5067 8.5929 42 1 -2.4629 5.1700 3.9785 43 1 -1.8051 3.5874 0.8078 44 1 -2.8167 4.6322 1.6491 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001556106245.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:56 Heat of formation + Delta-G solvation = -107.961075 kcal Electronic energy + Delta-G solvation = -27523.005354 eV Core-core repulsion = 23566.448234 eV Total energy + Delta-G solvation = -3956.557120 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.49088 -39.53867 -38.12892 -37.11803 -36.95550 -35.57463 -34.34210 -33.96815 -33.29158 -31.91075 -29.89558 -28.87811 -25.87618 -24.96990 -24.50380 -23.40376 -22.19563 -21.28805 -19.99052 -19.45985 -18.80163 -18.18670 -17.59842 -17.27663 -17.21242 -16.76268 -16.51981 -16.33918 -16.29924 -15.42886 -15.21969 -14.86656 -14.75603 -14.58763 -14.43650 -14.21802 -13.95311 -13.71271 -13.45454 -13.32046 -13.18232 -13.13061 -13.06414 -12.93353 -12.68340 -12.58421 -12.31462 -12.20387 -12.08226 -12.04806 -11.90349 -11.60048 -11.37234 -11.07213 -10.71370 -10.53729 -10.37523 -9.70622 -8.62921 -8.18114 -6.35039 -0.92639 -0.50599 0.46839 1.43735 1.44847 1.54689 1.72811 1.91112 2.32400 2.56390 2.67846 2.90689 3.01384 3.11898 3.24605 3.69697 3.78786 3.85111 3.98610 4.15165 4.30588 4.45452 4.47494 4.48678 4.56117 4.70872 4.74988 4.80718 4.87103 4.93422 5.05039 5.08035 5.18216 5.20693 5.25658 5.41681 5.50180 5.57580 5.67381 5.77329 5.88402 6.14202 6.46872 6.71184 6.86349 6.94795 7.31645 7.50167 8.87014 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.019369 B = 0.002643 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.291314 B =10591.268912 C =11303.972839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.121 4.121 3 C 0.279 3.721 4 H 0.003 0.997 5 C -0.550 4.550 6 H 0.070 0.930 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.968 3.032 10 H -0.271 1.271 11 H -0.287 1.287 12 H -0.267 1.267 13 N -0.695 5.695 14 C 0.549 3.451 15 O -0.579 6.579 16 C -0.196 4.196 17 C -0.055 4.055 18 C -0.108 4.108 19 C -0.588 4.588 20 S 2.500 3.500 21 O -0.966 6.966 22 O -0.969 6.969 23 C -0.581 4.581 24 C -0.164 4.164 25 C -0.121 4.121 26 C 0.247 3.753 27 N -0.854 5.854 28 H 0.029 0.971 29 H 0.043 0.957 30 H 0.044 0.956 31 H 0.040 0.960 32 H 0.073 0.927 33 H 0.265 0.735 34 H 0.403 0.597 35 H 0.149 0.851 36 H 0.164 0.836 37 H 0.160 0.840 38 H 0.163 0.837 39 H 0.107 0.893 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.163 0.837 43 H 0.413 0.587 44 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.104 5.144 21.281 25.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.160 4.160 3 C 0.176 3.824 4 H 0.021 0.979 5 C -0.588 4.588 6 H 0.088 0.912 7 C -0.182 4.182 8 N -0.551 5.551 9 Si 0.793 3.207 10 H -0.196 1.196 11 H -0.213 1.213 12 H -0.191 1.191 13 N -0.343 5.343 14 C 0.338 3.662 15 O -0.462 6.462 16 C -0.205 4.205 17 C -0.075 4.075 18 C -0.129 4.129 19 C -0.674 4.674 20 S 2.683 3.317 21 O -0.963 6.963 22 O -0.967 6.967 23 C -0.714 4.714 24 C -0.223 4.223 25 C -0.144 4.144 26 C 0.133 3.867 27 N -0.401 5.401 28 H 0.048 0.952 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.091 0.909 33 H 0.074 0.926 34 H 0.239 0.761 35 H 0.167 0.833 36 H 0.182 0.818 37 H 0.178 0.822 38 H 0.181 0.819 39 H 0.125 0.875 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.181 0.819 43 H 0.254 0.746 44 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -12.357 5.828 20.540 24.668 hybrid contribution 0.953 -0.810 -1.317 1.816 sum -11.404 5.018 19.223 22.907 Atomic orbital electron populations 1.21672 0.96833 0.99192 1.00323 1.21783 0.93893 0.98927 1.01370 1.18423 0.93672 0.89275 0.81023 0.97916 1.21563 0.91453 1.39029 1.06758 0.91197 1.25717 1.03130 0.94363 0.95013 1.70034 1.36976 1.38244 1.09840 0.85410 0.79342 0.78850 0.77138 1.19591 1.21294 1.19114 1.46164 1.15004 1.55316 1.17820 1.18464 0.82245 0.78225 0.87263 1.90351 1.51747 1.62249 1.41847 1.19815 0.97531 1.07847 0.95309 1.21450 0.98328 0.96326 0.91369 1.20802 0.95548 0.97202 0.99334 1.30695 1.03531 1.13328 1.19817 1.05451 0.74967 0.77038 0.74258 1.93536 1.43544 1.84111 1.75135 1.93527 1.68111 1.53060 1.81983 1.30014 1.15355 1.16312 1.09739 1.21777 1.03551 1.03472 0.93480 1.20585 1.01508 1.01828 0.90475 1.17984 0.88514 0.91419 0.88737 1.43469 1.26601 1.53906 1.16106 0.95158 0.93845 0.93667 0.94100 0.90889 0.92571 0.76147 0.83343 0.81828 0.82161 0.81920 0.87454 0.90536 0.90623 0.81931 0.74581 0.76409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.31 8.51 71.98 0.61 -4.69 16 2 C -0.12 -5.77 5.45 30.59 0.17 -5.61 16 3 C 0.28 13.93 2.24 44.24 0.10 14.03 16 4 H 0.00 0.17 7.58 -2.38 -0.02 0.16 16 5 C -0.55 -28.57 8.73 25.60 0.22 -28.35 16 6 H 0.07 3.42 7.74 -2.91 -0.02 3.40 16 7 C 0.02 0.96 5.29 84.66 0.45 1.41 16 8 N -0.91 -51.24 11.29 21.45 0.24 -50.99 16 9 Si 0.97 41.62 29.54 68.60 2.03 43.64 16 10 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 11 H -0.29 -12.37 7.11 99.48 0.71 -11.66 16 12 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 13 N -0.70 -28.17 4.97 -449.37 -2.23 -30.40 16 14 C 0.55 21.39 6.31 86.67 0.55 21.94 16 15 O -0.58 -25.24 10.78 -4.01 -0.04 -25.28 16 16 C -0.20 -6.13 5.89 -19.98 -0.12 -6.25 16 17 C -0.05 -1.39 9.52 22.52 0.21 -1.17 16 18 C -0.11 -2.29 9.44 22.24 0.21 -2.08 16 19 C -0.59 -12.02 5.66 22.29 0.13 -11.89 16 20 S 2.50 41.34 5.15 -56.49 -0.29 41.05 16 21 O -0.97 -21.83 17.11 -127.65 -2.18 -24.01 16 22 O -0.97 -21.91 17.10 -127.65 -2.18 -24.09 16 23 C -0.58 -3.86 6.70 71.98 0.48 -3.38 16 24 C -0.16 -1.00 9.92 71.98 0.71 -0.28 16 25 C -0.12 -2.69 9.30 22.38 0.21 -2.49 16 26 C 0.25 6.91 6.76 38.71 0.26 7.17 16 27 N -0.85 -22.70 8.93 -50.95 -0.46 -23.15 16 28 H 0.03 1.39 7.84 -2.39 -0.02 1.38 16 29 H 0.04 1.80 5.65 -2.39 -0.01 1.79 16 30 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.04 1.84 8.14 -2.38 -0.02 1.82 16 32 H 0.07 3.92 5.95 -2.39 -0.01 3.91 16 33 H 0.27 14.13 8.31 -92.70 -0.77 13.36 16 34 H 0.40 13.96 6.60 -92.71 -0.61 13.34 16 35 H 0.15 3.22 6.45 -2.91 -0.02 3.20 16 36 H 0.16 2.66 7.55 -2.91 -0.02 2.64 16 37 H 0.16 0.43 8.14 -2.39 -0.02 0.41 16 38 H 0.16 0.42 8.14 -2.39 -0.02 0.40 16 39 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 40 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 41 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 42 H 0.16 2.82 7.55 -2.91 -0.02 2.80 16 43 H 0.41 13.23 5.34 -94.68 -0.51 12.72 16 44 H 0.41 7.85 8.84 -92.70 -0.82 7.03 16 Total: -1.00 -74.50 368.30 -1.80 -76.29 By element: Atomic # 1 Polarization: 39.48 SS G_CDS: -0.87 Total: 38.61 kcal Atomic # 6 Polarization: -25.85 SS G_CDS: 4.20 Total: -21.66 kcal Atomic # 7 Polarization: -102.11 SS G_CDS: -2.45 Total: -104.55 kcal Atomic # 8 Polarization: -68.97 SS G_CDS: -4.41 Total: -73.38 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.64 kcal Atomic # 16 Polarization: 41.34 SS G_CDS: -0.29 Total: 41.05 kcal Total: -74.50 -1.80 -76.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001556106245.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.667 kcal (2) G-P(sol) polarization free energy of solvation -74.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds