Wall clock time and date at job start Wed Apr 1 2020 00:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47758 * 2 1 4 4 C 1.50706 * 109.47001 * 119.99582 * 2 1 3 5 5 C 1.38228 * 120.00056 * 259.99936 * 4 2 1 6 6 C 1.38241 * 119.99915 * 179.97438 * 5 4 2 7 7 C 1.38228 * 119.99681 * 0.02562 * 6 5 4 8 8 S 1.76203 * 119.99649 * 179.97438 * 7 6 5 9 9 C 1.81404 * 104.44838 * 90.00553 * 8 7 6 10 10 O 1.42100 * 104.28012 * 333.93528 * 8 7 6 11 11 O 1.42100 * 104.27885 * 206.07639 * 8 7 6 12 12 C 1.38234 * 120.00757 * 0.25984 * 7 6 5 13 13 C 1.38234 * 119.99689 * 80.02543 * 4 2 1 14 14 N 1.46896 * 109.47471 * 239.99636 * 2 1 3 15 15 C 1.46906 * 111.00440 * 183.95647 * 14 2 1 16 16 C 1.46906 * 110.99932 * 60.00305 * 14 2 1 17 17 C 1.50701 * 109.46858 * 190.00503 * 16 14 2 18 18 O 1.21292 * 120.00300 * 359.97438 * 17 16 14 19 19 N 1.34774 * 119.99582 * 180.02562 * 17 16 14 20 20 C 1.37098 * 119.99917 * 179.97438 * 19 17 16 21 21 H 1.08002 * 120.00451 * 359.97438 * 20 19 17 22 22 C 1.38954 * 120.00033 * 179.97438 * 20 19 17 23 23 N 1.31408 * 120.00099 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99956 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47067 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.47008 * 119.99809 * 24 22 20 27 27 H 1.48499 * 109.47017 * 239.99647 * 24 22 20 28 28 H 1.08994 * 109.46973 * 300.00142 * 1 2 3 29 29 H 1.09003 * 109.46569 * 60.00610 * 1 2 3 30 30 H 1.09000 * 109.47027 * 179.97438 * 1 2 3 31 31 H 1.08004 * 120.00119 * 0.02562 * 5 4 2 32 32 H 1.07998 * 119.99727 * 180.02562 * 6 5 4 33 33 H 1.09002 * 109.47124 * 299.99881 * 9 8 7 34 34 H 1.09001 * 109.46975 * 180.02562 * 9 8 7 35 35 H 1.09004 * 109.47147 * 59.99966 * 9 8 7 36 36 H 1.08001 * 120.00506 * 179.72371 * 12 7 6 37 37 H 1.08001 * 120.00591 * 359.97438 * 13 4 2 38 38 H 1.08995 * 109.46940 * 60.00132 * 15 14 2 39 39 H 1.08998 * 109.47294 * 180.02562 * 15 14 2 40 40 H 1.09007 * 109.46638 * 299.99989 * 15 14 2 41 41 H 1.09001 * 109.46326 * 309.99783 * 16 14 2 42 42 H 1.08990 * 109.47127 * 70.00066 * 16 14 2 43 43 H 0.97000 * 120.00177 * 359.97438 * 19 17 16 44 44 H 0.97001 * 120.00474 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 6 2.4587 0.0195 2.3243 6 6 2.9189 -0.6321 3.4533 7 6 2.9533 -2.0135 3.4881 8 16 3.5406 -2.8441 4.9269 9 6 2.0604 -3.0817 5.9483 10 8 4.4218 -1.9102 5.5356 11 8 4.0169 -4.0918 4.4414 12 6 2.5324 -2.7434 2.3922 13 6 2.0671 -2.0918 1.2653 14 7 2.0197 -0.6925 -1.1993 15 6 3.4852 -0.7946 -1.1869 16 6 1.5488 -0.0264 -2.4211 17 6 1.8581 -0.8913 -3.6158 18 8 2.4163 -1.9575 -3.4645 19 7 1.5153 -0.4796 -4.8525 20 6 1.7971 -1.2662 -5.9395 21 1 2.2941 -2.2155 -5.8049 22 6 1.4432 -0.8420 -7.2145 23 7 0.8379 0.3128 -7.3783 24 14 1.8265 -1.9140 -8.6955 25 1 2.5063 -3.1552 -8.2454 26 1 0.5631 -2.2658 -9.3922 27 1 2.7153 -1.1730 -9.6261 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 2.4314 1.0989 2.2971 32 1 3.2517 -0.0619 4.3079 33 1 1.6246 -2.1117 6.1878 34 1 2.3338 -3.5944 6.8705 35 1 1.3333 -3.6813 5.4005 36 1 2.5635 -3.8227 2.4179 37 1 1.7340 -2.6621 0.4108 38 1 3.8030 -1.3532 -0.3066 39 1 3.8211 -1.3110 -2.0861 40 1 3.9188 0.2051 -1.1591 41 1 0.4723 0.1323 -2.3563 42 1 2.0520 0.9344 -2.5280 43 1 1.0691 0.3731 -4.9735 44 1 0.5912 0.6092 -8.2684 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066492267.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:06:26 Heat of formation + Delta-G solvation = -62.760070 kcal Electronic energy + Delta-G solvation = -27017.994217 eV Core-core repulsion = 23063.397159 eV Total energy + Delta-G solvation = -3954.597058 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -40.05076 -38.50463 -37.37160 -36.74015 -36.19477 -33.96085 -32.37062 -31.28352 -31.18189 -30.09502 -29.71414 -27.89300 -24.93614 -24.55885 -23.26309 -22.86635 -20.35370 -19.29196 -19.12697 -18.05604 -17.85939 -16.61347 -16.49069 -16.38594 -15.71305 -15.36149 -14.79437 -14.78888 -14.64355 -14.41907 -13.99430 -13.77586 -13.71617 -13.61166 -13.54948 -13.25754 -13.18363 -12.87468 -12.35277 -12.25711 -12.24478 -12.01571 -11.85412 -11.63950 -11.53145 -11.39447 -11.31608 -11.20044 -11.09417 -10.91139 -10.63922 -10.35463 -10.24063 -9.50449 -9.30352 -9.13859 -8.49760 -8.01177 -7.91297 -6.43647 -3.84329 -0.24844 0.62631 1.16118 2.57983 3.15002 3.21343 3.25921 3.33076 3.66799 3.80657 3.87082 3.89677 4.20921 4.36374 4.45012 4.48375 4.69256 4.72958 4.98388 5.09952 5.15400 5.21115 5.22267 5.25297 5.32755 5.46461 5.54757 5.62804 5.69762 5.75124 5.85394 5.91050 5.93887 5.94725 6.06604 6.15163 6.25557 6.37420 6.54350 6.69987 7.19751 7.30492 7.53822 8.04725 8.59712 9.16541 9.52433 10.04079 10.74142 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.026479 B = 0.002106 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.175090 B =13290.298915 C =13839.968430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.108 3.892 3 H 0.051 0.949 4 C -0.014 4.014 5 C -0.139 4.139 6 C -0.028 4.028 7 C -0.666 4.666 8 S 2.501 3.499 9 C -0.651 4.651 10 O -0.941 6.941 11 O -0.938 6.938 12 C -0.028 4.028 13 C -0.109 4.109 14 N -0.510 5.510 15 C 0.018 3.982 16 C 0.041 3.959 17 C 0.445 3.555 18 O -0.576 6.576 19 N -0.565 5.565 20 C -0.297 4.297 21 H 0.104 0.896 22 C 0.021 3.979 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.281 1.281 27 H -0.282 1.282 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.129 0.871 32 H 0.138 0.862 33 H 0.131 0.869 34 H 0.130 0.870 35 H 0.132 0.868 36 H 0.141 0.859 37 H 0.147 0.853 38 H 0.062 0.938 39 H 0.099 0.901 40 H 0.014 0.986 41 H 0.093 0.907 42 H 0.048 0.952 43 H 0.392 0.608 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.026 0.796 25.102 25.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.000 4.000 3 H 0.069 0.931 4 C -0.015 4.015 5 C -0.159 4.159 6 C -0.047 4.047 7 C -0.753 4.753 8 S 2.681 3.319 9 C -0.800 4.800 10 O -0.939 6.939 11 O -0.935 6.935 12 C -0.047 4.047 13 C -0.128 4.128 14 N -0.234 5.234 15 C -0.130 4.130 16 C -0.090 4.090 17 C 0.230 3.770 18 O -0.460 6.460 19 N -0.201 5.201 20 C -0.427 4.427 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.207 1.207 27 H -0.208 1.208 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.147 0.853 32 H 0.156 0.844 33 H 0.150 0.850 34 H 0.148 0.852 35 H 0.151 0.849 36 H 0.158 0.842 37 H 0.165 0.835 38 H 0.081 0.919 39 H 0.117 0.883 40 H 0.032 0.968 41 H 0.111 0.889 42 H 0.066 0.934 43 H 0.225 0.775 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.063 -0.556 25.190 25.219 hybrid contribution -0.634 1.335 -1.235 1.925 sum -1.697 0.778 23.955 24.028 Atomic orbital electron populations 1.21909 0.92875 1.03359 1.02009 1.20733 0.96196 0.94931 0.88166 0.93135 1.20178 0.92833 0.94348 0.94144 1.21141 1.01010 1.00201 0.93507 1.20813 0.93245 0.92189 0.98427 1.30380 1.20244 1.05267 1.19411 1.05067 0.76753 0.74660 0.75416 1.30232 1.21880 1.12151 1.15766 1.93578 1.60271 1.63030 1.76991 1.93595 1.77646 1.43111 1.79166 1.21000 0.91996 1.00192 0.91539 1.21370 0.98853 0.94247 0.98353 1.61663 1.11491 1.50604 0.99650 1.22610 0.86228 0.99464 1.04654 1.21955 1.01449 0.95544 0.90017 1.19687 0.85247 0.88300 0.83763 1.90490 1.46295 1.24086 1.85177 1.41869 1.52753 1.20718 1.04788 1.19742 1.36019 1.02899 0.84019 0.87854 1.25262 0.96940 0.96707 0.99088 1.69615 1.40805 1.19978 1.23950 0.85807 0.78090 0.79827 0.80668 1.19209 1.20748 1.20791 0.92168 0.91406 0.91196 0.85290 0.84376 0.85049 0.85165 0.84915 0.84154 0.83511 0.91934 0.88300 0.96753 0.88865 0.93417 0.77530 0.91935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 8.97 37.16 0.33 -1.19 16 2 C 0.11 1.31 2.28 -68.86 -0.16 1.16 16 3 H 0.05 0.58 8.00 -51.93 -0.42 0.16 16 4 C -0.01 -0.17 3.78 -104.62 -0.40 -0.56 16 5 C -0.14 -1.38 9.67 -39.58 -0.38 -1.76 16 6 C -0.03 -0.26 9.47 -39.58 -0.37 -0.64 16 7 C -0.67 -6.38 5.66 -39.59 -0.22 -6.61 16 8 S 2.50 20.31 5.80 -107.50 -0.62 19.68 16 9 C -0.65 -2.39 10.80 101.05 1.09 -1.30 16 10 O -0.94 -10.45 17.13 -57.54 -0.99 -11.44 16 11 O -0.94 -10.94 17.12 -57.54 -0.98 -11.93 16 12 C -0.03 -0.30 9.47 -39.58 -0.37 -0.68 16 13 C -0.11 -1.32 8.06 -39.58 -0.32 -1.64 16 14 N -0.51 -8.03 3.71 -237.72 -0.88 -8.91 16 15 C 0.02 0.30 8.77 60.07 0.53 0.82 16 16 C 0.04 0.71 5.26 -4.97 -0.03 0.68 16 17 C 0.44 10.19 7.47 -10.99 -0.08 10.11 16 18 O -0.58 -15.11 13.91 5.55 0.08 -15.03 16 19 N -0.56 -14.02 5.29 -10.96 -0.06 -14.07 16 20 C -0.30 -8.17 9.68 -14.93 -0.14 -8.31 16 21 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 23 N -0.90 -24.28 13.05 55.50 0.72 -23.55 16 24 Si 0.93 20.91 29.55 -169.99 -5.02 15.88 16 25 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.72 6.20 -51.93 -0.32 0.40 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.13 1.01 8.04 -52.48 -0.42 0.59 16 32 H 0.14 1.01 7.57 -52.49 -0.40 0.61 16 33 H 0.13 0.29 8.14 -51.92 -0.42 -0.14 16 34 H 0.13 0.29 8.14 -51.92 -0.42 -0.13 16 35 H 0.13 0.34 8.14 -51.92 -0.42 -0.09 16 36 H 0.14 1.30 7.56 -52.49 -0.40 0.90 16 37 H 0.15 1.95 7.72 -52.49 -0.41 1.54 16 38 H 0.06 0.96 6.11 -51.93 -0.32 0.64 16 39 H 0.10 1.96 5.82 -51.93 -0.30 1.66 16 40 H 0.01 0.21 8.14 -51.92 -0.42 -0.21 16 41 H 0.09 1.42 5.83 -51.93 -0.30 1.11 16 42 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 43 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16 44 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 374.91 15.07 5.65 5.65 Total: -1.00 -35.70 374.91 -8.80 -44.50 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -6.07 Total: 8.66 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: -0.63 Total: -9.45 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: -0.22 Total: -46.54 kcal Atomic # 8 Polarization: -36.50 SS G_CDS: -1.89 Total: -38.40 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: 20.31 SS G_CDS: -0.62 Total: 19.68 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.70 -8.80 -44.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066492267.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.258 kcal (2) G-P(sol) polarization free energy of solvation -35.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.17 seconds