Wall clock time and date at job start Wed Apr 1 2020 00:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47758 * 2 1 4 4 C 1.50706 * 109.47001 * 119.99582 * 2 1 3 5 5 C 1.38228 * 120.00056 * 259.99936 * 4 2 1 6 6 C 1.38241 * 119.99915 * 179.97438 * 5 4 2 7 7 C 1.38228 * 119.99681 * 0.02562 * 6 5 4 8 8 S 1.76203 * 119.99649 * 179.97438 * 7 6 5 9 9 C 1.81404 * 104.44838 * 90.00553 * 8 7 6 10 10 O 1.42100 * 104.28012 * 333.93528 * 8 7 6 11 11 O 1.42100 * 104.27885 * 206.07639 * 8 7 6 12 12 C 1.38234 * 120.00757 * 0.25984 * 7 6 5 13 13 C 1.38234 * 119.99689 * 80.02543 * 4 2 1 14 14 N 1.46896 * 109.47471 * 239.99636 * 2 1 3 15 15 C 1.46906 * 111.00440 * 183.95647 * 14 2 1 16 16 C 1.46906 * 110.99932 * 60.00305 * 14 2 1 17 17 C 1.50701 * 109.46858 * 190.00503 * 16 14 2 18 18 O 1.21292 * 120.00300 * 359.97438 * 17 16 14 19 19 N 1.34774 * 119.99582 * 180.02562 * 17 16 14 20 20 C 1.37098 * 119.99917 * 179.97438 * 19 17 16 21 21 H 1.08002 * 120.00451 * 359.97438 * 20 19 17 22 22 C 1.38954 * 120.00033 * 179.97438 * 20 19 17 23 23 N 1.31408 * 120.00099 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99956 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47067 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.47008 * 119.99809 * 24 22 20 27 27 H 1.48499 * 109.47017 * 239.99647 * 24 22 20 28 28 H 1.08994 * 109.46973 * 300.00142 * 1 2 3 29 29 H 1.09003 * 109.46569 * 60.00610 * 1 2 3 30 30 H 1.09000 * 109.47027 * 179.97438 * 1 2 3 31 31 H 1.08004 * 120.00119 * 0.02562 * 5 4 2 32 32 H 1.07998 * 119.99727 * 180.02562 * 6 5 4 33 33 H 1.09002 * 109.47124 * 299.99881 * 9 8 7 34 34 H 1.09001 * 109.46975 * 180.02562 * 9 8 7 35 35 H 1.09004 * 109.47147 * 59.99966 * 9 8 7 36 36 H 1.08001 * 120.00506 * 179.72371 * 12 7 6 37 37 H 1.08001 * 120.00591 * 359.97438 * 13 4 2 38 38 H 1.08995 * 109.46940 * 60.00132 * 15 14 2 39 39 H 1.08998 * 109.47294 * 180.02562 * 15 14 2 40 40 H 1.09007 * 109.46638 * 299.99989 * 15 14 2 41 41 H 1.09001 * 109.46326 * 309.99783 * 16 14 2 42 42 H 1.08990 * 109.47127 * 70.00066 * 16 14 2 43 43 H 0.97000 * 120.00177 * 359.97438 * 19 17 16 44 44 H 0.97001 * 120.00474 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 6 2.4587 0.0195 2.3243 6 6 2.9189 -0.6321 3.4533 7 6 2.9533 -2.0135 3.4881 8 16 3.5406 -2.8441 4.9269 9 6 2.0604 -3.0817 5.9483 10 8 4.4218 -1.9102 5.5356 11 8 4.0169 -4.0918 4.4414 12 6 2.5324 -2.7434 2.3922 13 6 2.0671 -2.0918 1.2653 14 7 2.0197 -0.6925 -1.1993 15 6 3.4852 -0.7946 -1.1869 16 6 1.5488 -0.0264 -2.4211 17 6 1.8581 -0.8913 -3.6158 18 8 2.4163 -1.9575 -3.4645 19 7 1.5153 -0.4796 -4.8525 20 6 1.7971 -1.2662 -5.9395 21 1 2.2941 -2.2155 -5.8049 22 6 1.4432 -0.8420 -7.2145 23 7 0.8379 0.3128 -7.3783 24 14 1.8265 -1.9140 -8.6955 25 1 2.5063 -3.1552 -8.2454 26 1 0.5631 -2.2658 -9.3922 27 1 2.7153 -1.1730 -9.6261 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 2.4314 1.0989 2.2971 32 1 3.2517 -0.0619 4.3079 33 1 1.6246 -2.1117 6.1878 34 1 2.3338 -3.5944 6.8705 35 1 1.3333 -3.6813 5.4005 36 1 2.5635 -3.8227 2.4179 37 1 1.7340 -2.6621 0.4108 38 1 3.8030 -1.3532 -0.3066 39 1 3.8211 -1.3110 -2.0861 40 1 3.9188 0.2051 -1.1591 41 1 0.4723 0.1323 -2.3563 42 1 2.0520 0.9344 -2.5280 43 1 1.0691 0.3731 -4.9735 44 1 0.5912 0.6092 -8.2684 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066492267.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:06:25 Heat of formation + Delta-G solvation = -90.036327 kcal Electronic energy + Delta-G solvation = -27019.177004 eV Core-core repulsion = 23063.397159 eV Total energy + Delta-G solvation = -3955.779845 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.04247 -40.07046 -38.12005 -38.01954 -36.95197 -35.92107 -33.45158 -33.23419 -31.99550 -30.87166 -30.21989 -29.34199 -26.72015 -25.65431 -24.33145 -23.75887 -21.47559 -20.79565 -19.98497 -19.83476 -18.78195 -18.01012 -17.32400 -17.12713 -16.81282 -16.62612 -16.29041 -16.02594 -15.82996 -15.51830 -15.47521 -15.06780 -14.73440 -14.46496 -14.32879 -13.98744 -13.91164 -13.76834 -13.72108 -13.47300 -13.17328 -13.12628 -13.02390 -13.01791 -12.82532 -12.57779 -12.44911 -12.38461 -12.15375 -12.11607 -12.07445 -11.93479 -11.47001 -11.44411 -10.30727 -10.07467 -9.99653 -9.95677 -9.25834 -8.46591 -5.94622 -0.82946 -0.16981 0.36243 1.35824 1.41226 1.55037 1.94809 2.06119 2.26880 2.42722 2.74354 3.07263 3.20192 3.21834 3.38598 3.56939 3.83474 3.99628 4.13642 4.15680 4.17539 4.21811 4.28718 4.34755 4.43419 4.49559 4.56572 4.58497 4.61410 4.76253 4.83971 4.93924 4.98669 5.03268 5.12356 5.13569 5.21138 5.30530 5.41482 5.52080 5.84920 5.90544 6.04516 6.18178 6.61413 7.14002 7.57488 8.13728 8.71018 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.026479 B = 0.002106 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.175090 B =13290.298915 C =13839.968430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.110 3.890 3 H 0.068 0.932 4 C -0.027 4.027 5 C -0.137 4.137 6 C -0.031 4.031 7 C -0.665 4.665 8 S 2.505 3.495 9 C -0.622 4.622 10 O -0.976 6.976 11 O -0.983 6.983 12 C -0.040 4.040 13 C -0.126 4.126 14 N -0.525 5.525 15 C 0.028 3.972 16 C 0.055 3.945 17 C 0.442 3.558 18 O -0.614 6.614 19 N -0.575 5.575 20 C -0.329 4.329 21 H 0.077 0.923 22 C -0.013 4.013 23 N -0.920 5.920 24 Si 0.991 3.009 25 H -0.275 1.275 26 H -0.270 1.270 27 H -0.271 1.271 28 H 0.086 0.914 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.154 0.846 32 H 0.161 0.839 33 H 0.157 0.843 34 H 0.154 0.846 35 H 0.151 0.849 36 H 0.145 0.855 37 H 0.124 0.876 38 H 0.067 0.933 39 H 0.057 0.943 40 H 0.028 0.972 41 H 0.118 0.882 42 H 0.067 0.933 43 H 0.396 0.604 44 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.256 2.172 27.177 27.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.003 3.997 3 H 0.086 0.914 4 C -0.027 4.027 5 C -0.156 4.156 6 C -0.049 4.049 7 C -0.751 4.751 8 S 2.689 3.311 9 C -0.776 4.776 10 O -0.973 6.973 11 O -0.980 6.980 12 C -0.059 4.059 13 C -0.145 4.145 14 N -0.250 5.250 15 C -0.120 4.120 16 C -0.076 4.076 17 C 0.230 3.770 18 O -0.500 6.500 19 N -0.213 5.213 20 C -0.459 4.459 21 H 0.095 0.905 22 C -0.213 4.213 23 N -0.561 5.561 24 Si 0.815 3.185 25 H -0.200 1.200 26 H -0.196 1.196 27 H -0.197 1.197 28 H 0.104 0.896 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.172 0.828 32 H 0.179 0.821 33 H 0.175 0.825 34 H 0.172 0.828 35 H 0.169 0.831 36 H 0.162 0.838 37 H 0.142 0.858 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.046 0.954 41 H 0.135 0.865 42 H 0.085 0.915 43 H 0.230 0.770 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.274 0.855 27.241 27.349 hybrid contribution -0.279 0.874 -1.715 1.945 sum -2.553 1.730 25.525 25.711 Atomic orbital electron populations 1.21909 0.91674 1.02940 1.03319 1.20829 0.97119 0.95286 0.86487 0.91432 1.20170 0.93922 0.94027 0.94618 1.21407 0.99951 1.01417 0.92801 1.21168 0.92515 0.92200 0.99058 1.30603 1.19127 1.05709 1.19680 1.04849 0.78087 0.73093 0.75104 1.30019 1.18131 1.14422 1.15062 1.93530 1.63068 1.63651 1.77053 1.93540 1.79865 1.44401 1.80222 1.21088 0.92405 1.00674 0.91683 1.21258 1.00216 0.94816 0.98255 1.61572 1.10932 1.51959 1.00529 1.22391 0.87097 0.99725 1.02784 1.21815 1.03138 0.94672 0.87981 1.20756 0.83297 0.88274 0.84709 1.90473 1.47466 1.26115 1.85944 1.41928 1.53497 1.20774 1.05068 1.19653 1.37596 1.02894 0.85727 0.90489 1.26002 0.96362 0.97902 1.01043 1.69668 1.40831 1.20742 1.24897 0.84901 0.78270 0.77927 0.77418 1.19972 1.19561 1.19678 0.89564 0.91304 0.92500 0.82803 0.82130 0.82479 0.82824 0.83103 0.83755 0.85786 0.91393 0.92378 0.95372 0.86468 0.91477 0.77017 0.91349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 8.97 71.98 0.65 -2.05 16 2 C 0.11 2.48 2.28 44.17 0.10 2.58 16 3 H 0.07 1.33 8.00 -2.39 -0.02 1.31 16 4 C -0.03 -0.58 3.78 -19.87 -0.08 -0.66 16 5 C -0.14 -2.36 9.67 22.27 0.22 -2.14 16 6 C -0.03 -0.51 9.47 22.27 0.21 -0.29 16 7 C -0.67 -11.95 5.66 22.27 0.13 -11.82 16 8 S 2.50 37.45 5.80 -56.49 -0.33 37.12 16 9 C -0.62 -2.15 10.80 113.37 1.22 -0.92 16 10 O -0.98 -20.57 17.13 -127.65 -2.19 -22.75 16 11 O -0.98 -23.03 17.12 -127.65 -2.19 -25.22 16 12 C -0.04 -0.85 9.47 22.27 0.21 -0.64 16 13 C -0.13 -3.09 8.06 22.27 0.18 -2.91 16 14 N -0.53 -16.43 3.71 -906.02 -3.36 -19.79 16 15 C 0.03 0.94 8.77 127.69 1.12 2.06 16 16 C 0.05 1.83 5.26 85.56 0.45 2.28 16 17 C 0.44 20.81 7.47 87.66 0.66 21.47 16 18 O -0.61 -33.73 13.91 -3.07 -0.04 -33.77 16 19 N -0.58 -29.28 5.29 -306.98 -1.62 -30.90 16 20 C -0.33 -18.66 9.68 84.04 0.81 -17.85 16 21 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 22 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 23 N -0.92 -49.41 13.05 21.66 0.28 -49.13 16 24 Si 0.99 43.12 29.55 68.60 2.03 45.14 16 25 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 26 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 27 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 28 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.07 1.29 6.20 -2.39 -0.01 1.28 16 30 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.15 1.83 8.04 -2.91 -0.02 1.80 16 32 H 0.16 1.87 7.57 -2.91 -0.02 1.85 16 33 H 0.16 -0.11 8.14 -2.39 -0.02 -0.13 16 34 H 0.15 0.00 8.14 -2.39 -0.02 -0.02 16 35 H 0.15 0.15 8.14 -2.39 -0.02 0.13 16 36 H 0.14 2.81 7.56 -2.91 -0.02 2.79 16 37 H 0.12 3.53 7.72 -2.91 -0.02 3.51 16 38 H 0.07 2.15 6.11 -2.39 -0.01 2.14 16 39 H 0.06 2.42 5.82 -2.39 -0.01 2.41 16 40 H 0.03 0.83 8.14 -2.38 -0.02 0.82 16 41 H 0.12 3.39 5.83 -2.39 -0.01 3.37 16 42 H 0.07 2.02 8.12 -2.39 -0.02 2.00 16 43 H 0.40 19.06 7.90 -92.71 -0.73 18.33 16 44 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 Total: -1.00 -80.50 374.91 -0.78 -81.28 By element: Atomic # 1 Polarization: 28.86 SS G_CDS: 0.30 Total: 29.16 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: 6.34 Total: -11.15 kcal Atomic # 7 Polarization: -95.11 SS G_CDS: -4.70 Total: -99.81 kcal Atomic # 8 Polarization: -77.33 SS G_CDS: -4.41 Total: -81.74 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.14 kcal Atomic # 16 Polarization: 37.45 SS G_CDS: -0.33 Total: 37.12 kcal Total: -80.50 -0.78 -81.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066492267.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.759 kcal (2) G-P(sol) polarization free energy of solvation -80.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds