Wall clock time and date at job start Tue Mar 31 2020 23:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47106 * 2 1 4 4 N 1.46504 * 109.46906 * 240.00246 * 2 1 3 5 5 S 1.65603 * 119.99789 * 215.00221 * 4 2 1 6 6 O 1.42099 * 106.40350 * 178.53871 * 5 4 2 7 7 O 1.42098 * 106.39914 * 311.45562 * 5 4 2 8 8 C 1.76200 * 107.21987 * 64.99613 * 5 4 2 9 9 C 1.38382 * 119.92854 * 269.72841 * 8 5 4 10 10 C 1.38334 * 120.29364 * 179.72393 * 9 8 5 11 11 C 1.37980 * 120.14048 * 0.55056 * 10 9 8 12 12 C 1.39555 * 119.85524 * 359.72222 * 11 10 9 13 13 C 1.47843 * 120.14264 * 180.02562 * 12 11 10 14 14 O 1.21552 * 120.00139 * 140.80495 * 13 12 11 15 15 N 1.34777 * 120.00222 * 320.80295 * 13 12 11 16 16 C 1.46496 * 120.00266 * 4.84281 * 15 13 12 17 17 C 1.46508 * 119.99966 * 184.84856 * 15 13 12 18 18 C 1.50704 * 109.47148 * 90.00003 * 17 15 13 19 19 H 1.08005 * 119.99773 * 359.97438 * 18 17 15 20 20 C 1.37873 * 119.99941 * 180.02562 * 18 17 15 21 21 N 1.31523 * 119.99650 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00129 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46983 * 89.99823 * 22 20 18 24 24 H 1.48500 * 109.47168 * 209.99518 * 22 20 18 25 25 H 1.48494 * 109.46912 * 329.99567 * 22 20 18 26 26 C 1.37934 * 119.92535 * 90.00042 * 8 5 4 27 27 H 1.09001 * 109.47330 * 59.99493 * 1 2 3 28 28 H 1.09000 * 109.47272 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47222 * 300.00202 * 1 2 3 30 30 H 1.08996 * 109.47473 * 120.00052 * 2 1 3 31 31 H 1.09002 * 109.46949 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.46991 * 299.99600 * 3 2 1 33 33 H 1.08998 * 109.46991 * 60.00407 * 3 2 1 34 34 H 0.96992 * 120.00052 * 34.99722 * 4 2 1 35 35 H 1.08003 * 119.85097 * 359.97438 * 9 8 5 36 36 H 1.08003 * 119.93159 * 180.24886 * 10 9 8 37 37 H 1.08004 * 120.06898 * 179.74980 * 11 10 9 38 38 H 1.09002 * 109.46724 * 85.62373 * 16 15 13 39 39 H 1.08997 * 109.47569 * 205.62519 * 16 15 13 40 40 H 1.09001 * 109.47273 * 325.63273 * 16 15 13 41 41 H 1.08994 * 109.46776 * 209.99880 * 17 15 13 42 42 H 1.09000 * 109.46896 * 329.99580 * 17 15 13 43 43 H 0.97000 * 119.98969 * 180.02562 * 21 20 18 44 44 H 1.07999 * 120.07636 * 359.97438 * 26 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 -1.1962 5 16 3.4018 -1.5976 -1.1219 6 8 3.5855 -2.1562 -2.4155 7 8 4.3775 -0.7890 -0.4789 8 6 3.0821 -2.9488 -0.0372 9 6 3.3422 -2.8242 1.3162 10 6 3.0886 -3.8783 2.1755 11 6 2.5848 -5.0657 1.6855 12 6 2.3256 -5.1999 0.3208 13 6 1.7852 -6.4692 -0.2109 14 8 0.9417 -6.4515 -1.0860 15 7 2.2277 -7.6460 0.2747 16 6 3.1644 -7.6681 1.4008 17 6 1.7722 -8.9032 -0.3239 18 6 2.7084 -9.2980 -1.4369 19 1 3.5576 -8.6745 -1.6749 20 6 2.4802 -10.4545 -2.1520 21 7 1.4458 -11.2134 -1.8624 22 14 3.6403 -10.9435 -3.5321 23 1 4.7301 -11.7914 -2.9856 24 1 2.8901 -11.7052 -4.5628 25 1 4.2228 -9.7228 -4.1449 26 6 2.5784 -4.1304 -0.5399 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.5311 -0.6166 -2.0317 35 1 3.7411 -1.8985 1.7040 36 1 3.2900 -3.7733 3.2313 37 1 2.3911 -5.8893 2.3568 38 1 2.6081 -7.6213 2.3370 39 1 3.7477 -8.5883 1.3704 40 1 3.8343 -6.8109 1.3331 41 1 1.7614 -9.6845 0.4361 42 1 0.7668 -8.7718 -0.7241 43 1 1.2856 -12.0273 -2.3653 44 1 2.3795 -4.2278 -1.5969 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073050364.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:50:35 Heat of formation + Delta-G solvation = -77.963051 kcal Electronic energy + Delta-G solvation = -27647.055878 eV Core-core repulsion = 23691.799570 eV Total energy + Delta-G solvation = -3955.256308 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.08834 -38.07622 -37.56571 -36.96935 -35.99614 -35.06377 -32.83326 -31.52133 -31.26895 -30.87876 -27.85667 -27.51774 -26.22117 -24.13017 -23.39426 -22.28296 -21.80654 -20.13852 -19.30803 -17.89619 -17.48723 -16.66304 -16.56289 -16.43379 -15.96373 -15.66661 -15.22567 -14.77990 -14.63906 -14.42841 -14.22392 -14.00104 -13.77300 -13.28426 -13.05697 -13.02097 -12.75631 -12.57580 -12.32477 -12.25077 -12.20090 -12.16830 -11.87407 -11.85646 -11.76695 -11.66204 -11.28865 -11.23819 -10.97479 -10.88126 -10.62829 -10.20675 -9.93204 -9.72436 -9.51536 -9.26044 -9.03672 -8.47665 -7.78676 -6.09113 -4.14451 0.18694 0.58658 0.97990 2.71756 3.01957 3.29000 3.35909 3.40609 3.53308 3.60031 3.88898 4.18661 4.36600 4.41778 4.61819 4.64830 4.68534 4.75617 4.81202 4.97310 5.02902 5.22898 5.25601 5.25850 5.42837 5.44797 5.47101 5.53181 5.66781 5.71619 5.72602 5.80772 5.89381 5.94493 6.00130 6.10161 6.12843 6.55866 6.67661 6.94742 7.34248 7.41901 7.86826 8.15975 8.23239 8.77791 8.94146 9.51158 10.99004 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016989 B = 0.002914 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.693205 B = 9604.937772 C =10105.941449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.146 3.854 3 C -0.173 4.173 4 N -1.113 6.113 5 S 2.696 3.304 6 O -0.954 6.954 7 O -0.956 6.956 8 C -0.686 4.686 9 C -0.015 4.015 10 C -0.147 4.147 11 C -0.042 4.042 12 C -0.132 4.132 13 C 0.545 3.455 14 O -0.531 6.531 15 N -0.592 5.592 16 C 0.075 3.925 17 C 0.244 3.756 18 C -0.531 4.531 19 H 0.058 0.942 20 C 0.062 3.938 21 N -0.894 5.894 22 Si 0.899 3.101 23 H -0.280 1.280 24 H -0.284 1.284 25 H -0.273 1.273 26 C 0.031 3.969 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.420 0.580 35 H 0.141 0.859 36 H 0.137 0.863 37 H 0.145 0.855 38 H 0.048 0.952 39 H 0.079 0.921 40 H 0.061 0.939 41 H 0.036 0.964 42 H 0.047 0.953 43 H 0.264 0.736 44 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.834 23.113 10.910 25.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.039 3.961 3 C -0.232 4.232 4 N -0.873 5.873 5 S 2.785 3.215 6 O -0.944 6.944 7 O -0.946 6.946 8 C -0.773 4.773 9 C -0.034 4.034 10 C -0.166 4.166 11 C -0.061 4.061 12 C -0.136 4.136 13 C 0.331 3.669 14 O -0.409 6.409 15 N -0.323 5.323 16 C -0.069 4.069 17 C 0.125 3.875 18 C -0.570 4.570 19 H 0.077 0.923 20 C -0.140 4.140 21 N -0.533 5.533 22 Si 0.727 3.273 23 H -0.206 1.206 24 H -0.210 1.210 25 H -0.197 1.197 26 C 0.011 3.989 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.255 0.745 35 H 0.158 0.842 36 H 0.155 0.845 37 H 0.163 0.837 38 H 0.067 0.933 39 H 0.097 0.903 40 H 0.080 0.920 41 H 0.054 0.946 42 H 0.065 0.935 43 H 0.074 0.926 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 1.161 23.048 10.131 25.203 hybrid contribution 0.054 -0.939 -0.531 1.080 sum 1.215 22.109 9.600 24.134 Atomic orbital electron populations 1.22118 0.93875 1.03137 1.02868 1.20760 0.95553 0.93412 0.86349 1.22353 1.02853 0.95537 1.02494 1.55692 1.47628 1.64901 1.19054 1.01867 0.72893 0.73210 0.73507 1.93632 1.84334 1.78757 1.37649 1.93579 1.56472 1.67173 1.77386 1.30836 1.18451 1.17393 1.10579 1.21024 0.92107 0.99213 0.91069 1.21224 1.01769 0.93244 1.00323 1.22085 0.91574 0.97656 0.94773 1.20409 1.02817 0.95994 0.94390 1.18080 0.82832 0.83177 0.82819 1.90773 1.32232 1.86917 1.30957 1.48103 1.44086 1.07618 1.32520 1.21995 0.93060 1.03344 0.88465 1.19392 0.96841 0.77911 0.93320 1.21430 1.11279 1.07358 1.16920 0.92332 1.24935 0.95553 0.96180 0.97343 1.69936 1.27778 1.14386 1.41168 0.86473 0.80549 0.78613 0.81698 1.20584 1.20998 1.19734 1.20968 0.87990 0.89364 1.00574 0.91776 0.91563 0.91134 0.89867 0.91002 0.91997 0.91431 0.74545 0.84159 0.84513 0.83749 0.93344 0.90255 0.92005 0.94644 0.93451 0.92623 0.83386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.93 9.44 37.16 0.35 -0.58 16 2 C 0.15 1.00 3.38 -67.93 -0.23 0.77 16 3 C -0.17 -1.10 9.52 37.16 0.35 -0.75 16 4 N -1.11 -9.30 5.47 -4.89 -0.03 -9.32 16 5 S 2.70 31.68 5.65 -107.50 -0.61 31.07 16 6 O -0.95 -14.71 17.27 -57.17 -0.99 -15.70 16 7 O -0.96 -12.43 16.53 -57.17 -0.94 -13.37 16 8 C -0.69 -8.53 5.81 -39.64 -0.23 -8.76 16 9 C -0.01 -0.15 8.91 -39.49 -0.35 -0.50 16 10 C -0.15 -1.42 10.03 -39.64 -0.40 -1.82 16 11 C -0.04 -0.52 7.56 -39.19 -0.30 -0.81 16 12 C -0.13 -2.16 5.24 -104.97 -0.55 -2.71 16 13 C 0.54 11.61 7.35 -12.33 -0.09 11.52 16 14 O -0.53 -13.52 16.47 5.32 0.09 -13.43 16 15 N -0.59 -12.53 2.86 -184.08 -0.53 -13.06 16 16 C 0.08 1.16 8.88 59.84 0.53 1.69 16 17 C 0.24 6.34 5.18 -5.19 -0.03 6.31 16 18 C -0.53 -15.08 9.39 -34.44 -0.32 -15.41 16 19 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 20 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 21 N -0.89 -26.44 13.29 55.43 0.74 -25.71 16 22 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 26 C 0.03 0.48 9.10 -39.19 -0.36 0.13 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.08 0.51 7.24 -51.93 -0.38 0.14 16 31 H 0.07 0.56 7.64 -51.93 -0.40 0.16 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.42 2.85 8.84 -34.47 -0.30 2.55 16 35 H 0.14 1.08 7.60 -52.48 -0.40 0.68 16 36 H 0.14 0.86 8.06 -52.48 -0.42 0.44 16 37 H 0.14 1.51 5.31 -52.48 -0.28 1.23 16 38 H 0.05 0.59 6.90 -51.93 -0.36 0.23 16 39 H 0.08 1.25 8.04 -51.93 -0.42 0.84 16 40 H 0.06 0.84 5.81 -51.93 -0.30 0.53 16 41 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 42 H 0.05 1.38 7.36 -51.93 -0.38 1.00 16 43 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 44 H 0.15 2.45 7.61 -52.49 -0.40 2.05 16 LS Contribution 378.94 15.07 5.71 5.71 Total: -1.00 -37.36 378.94 -9.41 -46.77 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -6.11 Total: -0.70 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: -1.72 Total: -9.23 kcal Atomic # 7 Polarization: -48.27 SS G_CDS: 0.18 Total: -48.09 kcal Atomic # 8 Polarization: -40.66 SS G_CDS: -1.84 Total: -42.50 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Atomic # 16 Polarization: 31.68 SS G_CDS: -0.61 Total: 31.07 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -37.36 -9.41 -46.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073050364.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.191 kcal (2) G-P(sol) polarization free energy of solvation -37.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds