Wall clock time and date at job start Tue Mar 31 2020 23:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47106 * 2 1 4 4 N 1.46504 * 109.46906 * 240.00246 * 2 1 3 5 5 S 1.65603 * 119.99789 * 215.00221 * 4 2 1 6 6 O 1.42099 * 106.40350 * 178.53871 * 5 4 2 7 7 O 1.42098 * 106.39914 * 311.45562 * 5 4 2 8 8 C 1.76200 * 107.21987 * 64.99613 * 5 4 2 9 9 C 1.38382 * 119.92854 * 269.72841 * 8 5 4 10 10 C 1.38334 * 120.29364 * 179.72393 * 9 8 5 11 11 C 1.37980 * 120.14048 * 0.55056 * 10 9 8 12 12 C 1.39555 * 119.85524 * 359.72222 * 11 10 9 13 13 C 1.47843 * 120.14264 * 180.02562 * 12 11 10 14 14 O 1.21552 * 120.00139 * 140.80495 * 13 12 11 15 15 N 1.34777 * 120.00222 * 320.80295 * 13 12 11 16 16 C 1.46496 * 120.00266 * 4.84281 * 15 13 12 17 17 C 1.46508 * 119.99966 * 184.84856 * 15 13 12 18 18 C 1.50704 * 109.47148 * 90.00003 * 17 15 13 19 19 H 1.08005 * 119.99773 * 359.97438 * 18 17 15 20 20 C 1.37873 * 119.99941 * 180.02562 * 18 17 15 21 21 N 1.31523 * 119.99650 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00129 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46983 * 89.99823 * 22 20 18 24 24 H 1.48500 * 109.47168 * 209.99518 * 22 20 18 25 25 H 1.48494 * 109.46912 * 329.99567 * 22 20 18 26 26 C 1.37934 * 119.92535 * 90.00042 * 8 5 4 27 27 H 1.09001 * 109.47330 * 59.99493 * 1 2 3 28 28 H 1.09000 * 109.47272 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47222 * 300.00202 * 1 2 3 30 30 H 1.08996 * 109.47473 * 120.00052 * 2 1 3 31 31 H 1.09002 * 109.46949 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.46991 * 299.99600 * 3 2 1 33 33 H 1.08998 * 109.46991 * 60.00407 * 3 2 1 34 34 H 0.96992 * 120.00052 * 34.99722 * 4 2 1 35 35 H 1.08003 * 119.85097 * 359.97438 * 9 8 5 36 36 H 1.08003 * 119.93159 * 180.24886 * 10 9 8 37 37 H 1.08004 * 120.06898 * 179.74980 * 11 10 9 38 38 H 1.09002 * 109.46724 * 85.62373 * 16 15 13 39 39 H 1.08997 * 109.47569 * 205.62519 * 16 15 13 40 40 H 1.09001 * 109.47273 * 325.63273 * 16 15 13 41 41 H 1.08994 * 109.46776 * 209.99880 * 17 15 13 42 42 H 1.09000 * 109.46896 * 329.99580 * 17 15 13 43 43 H 0.97000 * 119.98969 * 180.02562 * 21 20 18 44 44 H 1.07999 * 120.07636 * 359.97438 * 26 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 -1.1962 5 16 3.4018 -1.5976 -1.1219 6 8 3.5855 -2.1562 -2.4155 7 8 4.3775 -0.7890 -0.4789 8 6 3.0821 -2.9488 -0.0372 9 6 3.3422 -2.8242 1.3162 10 6 3.0886 -3.8783 2.1755 11 6 2.5848 -5.0657 1.6855 12 6 2.3256 -5.1999 0.3208 13 6 1.7852 -6.4692 -0.2109 14 8 0.9417 -6.4515 -1.0860 15 7 2.2277 -7.6460 0.2747 16 6 3.1644 -7.6681 1.4008 17 6 1.7722 -8.9032 -0.3239 18 6 2.7084 -9.2980 -1.4369 19 1 3.5576 -8.6745 -1.6749 20 6 2.4802 -10.4545 -2.1520 21 7 1.4458 -11.2134 -1.8624 22 14 3.6403 -10.9435 -3.5321 23 1 4.7301 -11.7914 -2.9856 24 1 2.8901 -11.7052 -4.5628 25 1 4.2228 -9.7228 -4.1449 26 6 2.5784 -4.1304 -0.5399 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.5311 -0.6166 -2.0317 35 1 3.7411 -1.8985 1.7040 36 1 3.2900 -3.7733 3.2313 37 1 2.3911 -5.8893 2.3568 38 1 2.6081 -7.6213 2.3370 39 1 3.7477 -8.5883 1.3704 40 1 3.8343 -6.8109 1.3331 41 1 1.7614 -9.6845 0.4361 42 1 0.7668 -8.7718 -0.7241 43 1 1.2856 -12.0273 -2.3653 44 1 2.3795 -4.2278 -1.5969 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073050364.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:50:34 Heat of formation + Delta-G solvation = -106.539282 kcal Electronic energy + Delta-G solvation = -27648.295037 eV Core-core repulsion = 23691.799570 eV Total energy + Delta-G solvation = -3956.495467 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.42187 -39.40564 -38.51707 -37.66597 -37.03635 -36.81297 -34.87824 -32.74022 -32.30684 -31.50453 -29.72676 -27.97261 -27.70355 -25.82066 -24.40122 -23.76915 -22.38900 -21.28446 -20.42496 -19.01659 -18.76259 -18.56369 -17.74928 -17.37534 -17.19303 -16.98662 -16.62831 -16.20230 -15.95200 -15.48155 -15.21813 -15.05861 -14.59088 -14.46880 -14.32412 -14.11502 -13.88819 -13.83696 -13.64183 -13.37626 -13.31164 -13.24854 -12.99750 -12.97641 -12.92787 -12.75012 -12.56626 -12.50302 -12.32236 -12.26999 -11.92909 -11.78536 -11.77669 -10.91004 -10.69145 -10.61605 -10.43603 -10.17377 -9.55037 -8.28309 -6.43282 -0.73486 -0.40137 -0.07417 1.33121 1.36421 1.46625 1.64403 1.90178 2.17460 2.36561 2.46812 2.70181 3.01565 3.20350 3.48240 3.71505 3.83306 3.86720 3.99894 4.16804 4.22595 4.29159 4.32231 4.42890 4.47622 4.57980 4.69554 4.83980 4.85532 4.86359 4.95497 4.96850 5.02823 5.08060 5.13459 5.17614 5.27227 5.40767 5.46589 5.47148 5.65532 5.74826 5.98698 6.04653 6.55958 6.65689 7.15572 7.31317 8.78967 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016989 B = 0.002914 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.693205 B = 9604.937772 C =10105.941449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.136 3.864 3 C -0.173 4.173 4 N -1.104 6.104 5 S 2.713 3.287 6 O -0.998 6.998 7 O -0.965 6.965 8 C -0.685 4.685 9 C -0.004 4.004 10 C -0.125 4.125 11 C -0.036 4.036 12 C -0.157 4.157 13 C 0.536 3.464 14 O -0.593 6.593 15 N -0.599 5.599 16 C 0.069 3.931 17 C 0.258 3.742 18 C -0.550 4.550 19 H 0.049 0.951 20 C 0.012 3.988 21 N -0.925 5.925 22 Si 0.966 3.034 23 H -0.260 1.260 24 H -0.278 1.278 25 H -0.277 1.277 26 C 0.009 3.991 27 H 0.067 0.933 28 H 0.053 0.947 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.088 0.912 34 H 0.426 0.574 35 H 0.177 0.823 36 H 0.189 0.811 37 H 0.166 0.834 38 H 0.090 0.910 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.034 0.966 42 H 0.002 0.998 43 H 0.269 0.731 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.358 25.107 13.839 28.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.030 3.970 3 C -0.232 4.232 4 N -0.867 5.867 5 S 2.803 3.197 6 O -0.989 6.989 7 O -0.955 6.955 8 C -0.772 4.772 9 C -0.023 4.023 10 C -0.143 4.143 11 C -0.054 4.054 12 C -0.161 4.161 13 C 0.325 3.675 14 O -0.475 6.475 15 N -0.329 5.329 16 C -0.073 4.073 17 C 0.137 3.863 18 C -0.588 4.588 19 H 0.068 0.932 20 C -0.188 4.188 21 N -0.564 5.564 22 Si 0.790 3.210 23 H -0.185 1.185 24 H -0.203 1.203 25 H -0.202 1.202 26 C -0.012 4.012 27 H 0.086 0.914 28 H 0.072 0.928 29 H 0.108 0.892 30 H 0.113 0.887 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.107 0.893 34 H 0.263 0.737 35 H 0.194 0.806 36 H 0.206 0.794 37 H 0.184 0.816 38 H 0.108 0.892 39 H 0.091 0.909 40 H 0.104 0.896 41 H 0.052 0.948 42 H 0.020 0.980 43 H 0.078 0.922 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.719 25.051 13.105 28.402 hybrid contribution -0.460 -1.440 -1.346 2.024 sum 2.259 23.611 11.759 26.473 Atomic orbital electron populations 1.22119 0.92954 1.02710 1.04056 1.21066 0.96330 0.93745 0.85815 1.22360 1.01877 0.95239 1.03748 1.55491 1.46862 1.64113 1.20234 1.01177 0.73312 0.72848 0.72391 1.93573 1.85445 1.79681 1.40171 1.93561 1.57496 1.67124 1.77323 1.30840 1.18190 1.16062 1.12068 1.21595 0.90045 1.00853 0.89822 1.21759 0.98830 0.91172 1.02564 1.22323 0.90796 0.99640 0.92652 1.20006 1.05906 0.93554 0.96606 1.18925 0.81884 0.84775 0.81906 1.90716 1.34973 1.88007 1.33819 1.48091 1.44907 1.06105 1.33792 1.22349 0.92892 1.04160 0.87889 1.18865 0.94348 0.80143 0.92944 1.21686 1.11456 1.07601 1.18101 0.93224 1.25821 0.97165 0.96099 0.99721 1.70039 1.29194 1.14836 1.42316 0.85439 0.78829 0.78182 0.78527 1.18480 1.20292 1.20216 1.20764 0.90126 0.90823 0.99464 0.91355 0.92771 0.89249 0.88698 0.92457 0.91702 0.89348 0.73736 0.80619 0.79373 0.81647 0.89214 0.90863 0.89614 0.94811 0.97984 0.92201 0.86366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 9.44 71.98 0.68 -0.83 16 2 C 0.14 1.56 3.38 44.99 0.15 1.72 16 3 C -0.17 -1.77 9.52 71.98 0.69 -1.08 16 4 N -1.10 -17.60 5.47 -169.39 -0.93 -18.53 16 5 S 2.71 62.59 5.65 -56.49 -0.32 62.28 16 6 O -1.00 -32.24 17.27 -128.00 -2.21 -34.45 16 7 O -0.97 -23.43 16.53 -128.00 -2.12 -25.55 16 8 C -0.68 -16.18 5.81 22.23 0.13 -16.05 16 9 C 0.00 -0.07 8.91 22.33 0.20 0.13 16 10 C -0.13 -1.74 10.03 22.23 0.22 -1.52 16 11 C -0.04 -0.76 7.56 22.53 0.17 -0.59 16 12 C -0.16 -5.14 5.24 -20.09 -0.11 -5.25 16 13 C 0.54 24.02 7.35 86.79 0.64 24.65 16 14 O -0.59 -32.78 16.47 -3.88 -0.06 -32.84 16 15 N -0.60 -26.12 2.86 -854.57 -2.44 -28.56 16 16 C 0.07 2.01 8.88 127.77 1.13 3.14 16 17 C 0.26 14.11 5.18 85.63 0.44 14.55 16 18 C -0.55 -32.47 9.39 25.60 0.24 -32.23 16 19 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 20 C 0.01 0.67 5.46 84.65 0.46 1.14 16 21 N -0.92 -56.20 13.29 21.45 0.28 -55.91 16 22 Si 0.97 45.87 29.54 68.60 2.03 47.90 16 23 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 24 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 25 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 26 C 0.01 0.28 9.10 22.53 0.21 0.48 16 27 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.09 0.53 8.14 -2.38 -0.02 0.51 16 30 H 0.10 0.85 7.24 -2.39 -0.02 0.84 16 31 H 0.06 0.77 7.64 -2.39 -0.02 0.75 16 32 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.43 5.78 8.84 -96.75 -0.85 4.92 16 35 H 0.18 1.69 7.60 -2.91 -0.02 1.67 16 36 H 0.19 0.84 8.06 -2.91 -0.02 0.82 16 37 H 0.17 2.74 5.31 -2.91 -0.02 2.72 16 38 H 0.09 1.89 6.90 -2.39 -0.02 1.88 16 39 H 0.07 2.24 8.04 -2.39 -0.02 2.22 16 40 H 0.09 2.10 5.81 -2.39 -0.01 2.09 16 41 H 0.03 1.82 8.07 -2.39 -0.02 1.81 16 42 H 0.00 0.13 7.36 -2.39 -0.02 0.11 16 43 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 44 H 0.12 4.38 7.61 -2.91 -0.02 4.36 16 Total: -1.00 -88.08 378.94 -0.34 -88.41 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: 0.17 Total: 8.99 kcal Atomic # 6 Polarization: -17.00 SS G_CDS: 5.26 Total: -11.74 kcal Atomic # 7 Polarization: -99.92 SS G_CDS: -3.08 Total: -103.00 kcal Atomic # 8 Polarization: -88.45 SS G_CDS: -4.39 Total: -92.84 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Atomic # 16 Polarization: 62.59 SS G_CDS: -0.32 Total: 62.28 kcal Total: -88.08 -0.34 -88.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073050364.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.124 kcal (2) G-P(sol) polarization free energy of solvation -88.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds