Wall clock time and date at job start Tue Mar 31 2020 23:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47058 * 2 1 4 4 S 1.81396 * 109.47192 * 119.99878 * 2 1 3 5 5 O 1.42106 * 108.57680 * 70.51581 * 4 2 1 6 6 O 1.42094 * 108.58084 * 299.48617 * 4 2 1 7 7 C 1.81405 * 101.92337 * 184.99970 * 4 2 1 8 8 C 1.50695 * 109.47400 * 180.02562 * 7 4 2 9 9 O 1.21284 * 119.99689 * 359.97438 * 8 7 4 10 10 N 1.34769 * 120.00272 * 180.02562 * 8 7 4 11 11 C 1.46501 * 120.00179 * 0.02562 * 10 8 7 12 12 C 1.50702 * 109.46933 * 252.75731 * 11 10 8 13 13 H 1.07999 * 119.99850 * 234.30369 * 12 11 10 14 14 C 1.37880 * 120.00071 * 54.30576 * 12 11 10 15 15 N 1.31513 * 120.00022 * 4.82011 * 14 12 11 16 16 Si 1.86804 * 119.99901 * 184.82673 * 14 12 11 17 17 H 1.48505 * 109.46980 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.46946 * 119.99678 * 16 14 12 19 19 H 1.48491 * 109.47016 * 239.99818 * 16 14 12 20 20 C 1.46499 * 120.00359 * 179.97438 * 10 8 7 21 21 C 1.50705 * 109.47390 * 274.72913 * 20 10 8 22 22 C 1.38677 * 120.41497 * 274.85984 * 21 20 10 23 23 C 1.38623 * 118.41783 * 179.78008 * 22 21 20 24 24 C 1.38234 * 119.16072 * 0.51572 * 23 22 21 25 25 N 1.31854 * 120.76445 * 359.72560 * 24 23 22 26 26 C 1.31892 * 121.72212 * 0.02562 * 25 24 23 27 27 H 1.09006 * 109.47254 * 300.00166 * 1 2 3 28 28 H 1.08996 * 109.46987 * 59.99655 * 1 2 3 29 29 H 1.08996 * 109.47136 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47481 * 240.00203 * 2 1 3 31 31 H 1.09002 * 109.47340 * 60.00565 * 3 2 1 32 32 H 1.09008 * 109.47204 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47502 * 300.00029 * 3 2 1 34 34 H 1.08997 * 109.47161 * 59.99878 * 7 4 2 35 35 H 1.09002 * 109.46973 * 300.00428 * 7 4 2 36 36 H 1.08995 * 109.47507 * 132.75558 * 11 10 8 37 37 H 1.08999 * 109.46865 * 12.75173 * 11 10 8 38 38 H 0.96997 * 119.99722 * 175.00151 * 15 14 12 39 39 H 1.09006 * 109.47094 * 34.72996 * 20 10 8 40 40 H 1.08997 * 109.47591 * 154.72317 * 20 10 8 41 41 H 1.07997 * 120.78926 * 0.02562 * 22 21 20 42 42 H 1.07993 * 120.42354 * 180.21749 * 23 22 21 43 43 H 1.07997 * 119.61619 * 179.74674 * 24 23 22 44 44 H 1.08006 * 119.61415 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 2.1346 -0.8551 1.4811 5 8 1.8620 -2.2431 1.3455 6 8 1.6605 -0.1636 2.6284 7 6 3.9266 -0.6031 1.3540 8 6 4.6106 -1.2600 2.5251 9 8 3.9538 -1.8406 3.3633 10 7 5.9520 -1.2015 2.6417 11 6 6.7452 -0.4987 1.6301 12 6 7.4815 -1.5035 0.7820 13 1 8.5529 -1.4309 0.6667 14 6 6.7874 -2.5154 0.1532 15 7 5.4742 -2.5492 0.2153 16 14 7.7124 -3.8385 -0.7867 17 1 9.1716 -3.5747 -0.7058 18 1 7.4154 -5.1668 -0.1930 19 1 7.2857 -3.8253 -2.2089 20 6 6.6169 -1.8396 3.7804 21 6 6.6242 -0.8929 4.9530 22 6 7.6246 0.0590 5.0805 23 6 7.5885 0.9117 6.1729 24 6 6.5698 0.7786 7.0979 25 7 5.6378 -0.1417 6.9469 26 6 5.6378 -0.9666 5.9178 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 4.1445 0.4649 1.3578 35 1 4.2907 -1.0448 0.4264 36 1 7.4633 0.1569 2.1225 37 1 6.0845 0.0952 0.9985 38 1 4.9821 -3.2180 -0.2861 39 1 6.0807 -2.7492 4.0512 40 1 7.6425 -2.0897 3.5090 41 1 8.4108 0.1368 4.3442 42 1 8.3492 1.6673 6.3023 43 1 6.5369 1.4363 7.9538 44 1 4.8573 -1.7076 5.8276 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127020455.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:58:02 Heat of formation + Delta-G solvation = -69.051337 kcal Electronic energy + Delta-G solvation = -28968.137437 eV Core-core repulsion = 25013.267570 eV Total energy + Delta-G solvation = -3954.869867 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.95059 -38.67553 -36.34891 -35.41792 -35.24027 -34.83839 -33.21681 -31.91521 -31.28406 -29.63623 -27.76380 -27.25135 -25.48448 -23.35701 -22.88968 -22.45779 -21.76035 -18.81472 -18.01766 -17.02542 -17.00534 -16.61552 -16.08090 -15.86169 -15.43913 -15.32793 -15.12182 -14.80800 -14.61893 -14.31918 -13.86550 -13.40742 -13.23486 -13.04332 -12.94987 -12.78921 -12.62133 -12.49367 -12.34123 -12.05069 -11.72131 -11.45091 -11.41341 -11.36245 -11.33553 -11.31393 -11.12997 -11.01970 -10.89239 -10.25664 -10.09358 -10.00638 -9.75592 -9.53559 -9.19851 -9.07612 -8.89781 -8.61468 -7.58511 -6.40493 -4.58428 0.51612 1.40216 1.58479 3.07996 3.20114 3.21386 3.37019 3.60113 3.90866 4.11740 4.19395 4.40648 4.43336 4.73080 4.76552 4.90052 4.97970 5.07750 5.15779 5.26906 5.30510 5.41351 5.44884 5.49462 5.55360 5.60517 5.68077 5.75536 5.80401 5.98313 6.01056 6.06554 6.20675 6.33605 6.40352 6.48428 6.63304 6.68895 6.84394 7.04236 7.40207 7.59938 7.81305 8.28969 8.43551 8.55480 9.09171 9.21865 10.59607 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.008247 B = 0.005901 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3394.403105 B = 4743.531678 C = 7190.997095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.593 4.593 3 C -0.145 4.145 4 S 2.442 3.558 5 O -0.927 6.927 6 O -0.942 6.942 7 C -0.640 4.640 8 C 0.579 3.421 9 O -0.580 6.580 10 N -0.565 5.565 11 C 0.223 3.777 12 C -0.538 4.538 13 H 0.065 0.935 14 C 0.078 3.922 15 N -0.884 5.884 16 Si 0.902 3.098 17 H -0.272 1.272 18 H -0.280 1.280 19 H -0.281 1.281 20 C 0.166 3.834 21 C -0.144 4.144 22 C -0.064 4.064 23 C -0.182 4.182 24 C 0.086 3.914 25 N -0.490 5.490 26 C 0.120 3.880 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.136 0.864 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.131 0.869 35 H 0.212 0.788 36 H 0.026 0.974 37 H 0.046 0.954 38 H 0.274 0.726 39 H 0.081 0.919 40 H 0.091 0.909 41 H 0.133 0.867 42 H 0.129 0.871 43 H 0.149 0.851 44 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.312 8.235 0.151 8.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.700 4.700 3 C -0.202 4.202 4 S 2.622 3.378 5 O -0.924 6.924 6 O -0.939 6.939 7 C -0.771 4.771 8 C 0.367 3.633 9 O -0.463 6.463 10 N -0.294 5.294 11 C 0.103 3.897 12 C -0.577 4.577 13 H 0.084 0.916 14 C -0.126 4.126 15 N -0.523 5.523 16 Si 0.729 3.271 17 H -0.197 1.197 18 H -0.206 1.206 19 H -0.207 1.207 20 C 0.041 3.959 21 C -0.147 4.147 22 C -0.090 4.090 23 C -0.202 4.202 24 C -0.071 4.071 25 N -0.199 5.199 26 C -0.037 4.037 27 H 0.090 0.910 28 H 0.095 0.905 29 H 0.088 0.912 30 H 0.154 0.846 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.149 0.851 35 H 0.228 0.772 36 H 0.045 0.955 37 H 0.064 0.936 38 H 0.085 0.915 39 H 0.099 0.901 40 H 0.109 0.891 41 H 0.151 0.849 42 H 0.147 0.853 43 H 0.166 0.834 44 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -1.910 7.301 1.797 7.757 hybrid contribution 1.705 -0.173 -2.149 2.748 sum -0.206 7.128 -0.352 7.139 Atomic orbital electron populations 1.21583 0.90503 1.03546 1.04097 1.30241 1.06615 1.09948 1.23217 1.21723 1.01972 0.92314 1.04239 1.07625 0.78221 0.75769 0.76224 1.93527 1.83367 1.29456 1.86063 1.93492 1.79228 1.75952 1.45241 1.31094 1.23165 1.09652 1.13229 1.18603 0.82978 0.78635 0.83062 1.90673 1.64860 1.46759 1.44021 1.48088 1.05007 1.53542 1.22743 1.19475 0.91371 0.92241 0.86569 1.21599 0.94772 1.12278 1.29008 0.91648 1.25003 0.94819 0.97584 0.95159 1.69217 1.06101 1.35701 1.41235 0.86375 0.79865 0.81516 0.79320 1.19675 1.20573 1.20662 1.19991 0.99508 0.93445 0.82926 1.21570 0.95890 0.99056 0.98186 1.21549 0.97665 0.93183 0.96633 1.22058 1.00728 1.01061 0.96370 1.22694 0.90578 0.95560 0.98253 1.67729 1.24849 1.04550 1.22738 1.22935 0.96219 0.95989 0.88520 0.90959 0.90534 0.91171 0.84574 0.90820 0.90789 0.90704 0.85127 0.77187 0.95524 0.93625 0.91543 0.90065 0.89103 0.84876 0.85313 0.83411 0.82204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.19 37.16 0.34 -1.35 16 2 C -0.59 -8.04 3.35 -26.73 -0.09 -8.13 16 3 C -0.14 -1.64 8.90 37.16 0.33 -1.31 16 4 S 2.44 47.27 3.50 -107.50 -0.38 46.89 16 5 O -0.93 -21.45 17.95 -59.53 -1.07 -22.51 16 6 O -0.94 -20.49 17.91 -59.52 -1.07 -21.56 16 7 C -0.64 -12.58 3.79 36.00 0.14 -12.45 16 8 C 0.58 13.39 6.36 -10.99 -0.07 13.32 16 9 O -0.58 -14.89 14.73 2.55 0.04 -14.85 16 10 N -0.57 -12.09 2.11 -176.43 -0.37 -12.46 16 11 C 0.22 4.59 5.65 -5.19 -0.03 4.56 16 12 C -0.54 -12.15 9.11 -34.44 -0.31 -12.47 16 13 H 0.07 1.46 7.82 -52.49 -0.41 1.05 16 14 C 0.08 1.82 5.33 -17.82 -0.10 1.72 16 15 N -0.88 -21.23 8.26 55.43 0.46 -20.77 16 16 Si 0.90 18.87 29.54 -169.99 -5.02 13.85 16 17 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 18 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 19 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 20 C 0.17 3.21 5.43 -5.19 -0.03 3.18 16 21 C -0.14 -2.53 5.44 -104.48 -0.57 -3.10 16 22 C -0.06 -0.95 9.88 -39.28 -0.39 -1.34 16 23 C -0.18 -2.41 10.11 -39.44 -0.40 -2.80 16 24 C 0.09 1.24 11.18 -17.54 -0.20 1.05 16 25 N -0.49 -8.69 10.36 -13.25 -0.14 -8.83 16 26 C 0.12 2.24 10.67 -17.55 -0.19 2.05 16 27 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.14 1.63 8.14 -51.92 -0.42 1.21 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 0.77 6.39 -51.92 -0.33 0.44 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.13 2.09 6.18 -51.93 -0.32 1.77 16 35 H 0.21 4.26 4.95 -51.92 -0.26 4.01 16 36 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.05 0.92 5.92 -51.93 -0.31 0.61 16 38 H 0.27 6.52 8.32 -40.82 -0.34 6.18 16 39 H 0.08 1.67 7.49 -51.93 -0.39 1.28 16 40 H 0.09 1.65 7.79 -51.93 -0.40 1.25 16 41 H 0.13 1.78 8.06 -52.49 -0.42 1.35 16 42 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 43 H 0.15 1.63 8.06 -52.49 -0.42 1.21 16 44 H 0.16 3.13 7.68 -52.48 -0.40 2.73 16 LS Contribution 373.79 15.07 5.63 5.63 Total: -1.00 -32.56 373.79 -9.66 -42.22 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -6.19 Total: 9.44 kcal Atomic # 6 Polarization: -15.49 SS G_CDS: -1.56 Total: -17.05 kcal Atomic # 7 Polarization: -42.01 SS G_CDS: -0.05 Total: -42.06 kcal Atomic # 8 Polarization: -56.83 SS G_CDS: -2.10 Total: -58.92 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.02 Total: 13.85 kcal Atomic # 16 Polarization: 47.27 SS G_CDS: -0.38 Total: 46.89 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.56 -9.66 -42.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127020455.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.835 kcal (2) G-P(sol) polarization free energy of solvation -32.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds