Wall clock time and date at job start Tue Mar 31 2020 23:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47058 * 2 1 4 4 S 1.81396 * 109.47192 * 119.99878 * 2 1 3 5 5 O 1.42106 * 108.57680 * 70.51581 * 4 2 1 6 6 O 1.42094 * 108.58084 * 299.48617 * 4 2 1 7 7 C 1.81405 * 101.92337 * 184.99970 * 4 2 1 8 8 C 1.50695 * 109.47400 * 180.02562 * 7 4 2 9 9 O 1.21284 * 119.99689 * 359.97438 * 8 7 4 10 10 N 1.34769 * 120.00272 * 180.02562 * 8 7 4 11 11 C 1.46501 * 120.00179 * 0.02562 * 10 8 7 12 12 C 1.50702 * 109.46933 * 252.75731 * 11 10 8 13 13 H 1.07999 * 119.99850 * 234.30369 * 12 11 10 14 14 C 1.37880 * 120.00071 * 54.30576 * 12 11 10 15 15 N 1.31513 * 120.00022 * 4.82011 * 14 12 11 16 16 Si 1.86804 * 119.99901 * 184.82673 * 14 12 11 17 17 H 1.48505 * 109.46980 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.46946 * 119.99678 * 16 14 12 19 19 H 1.48491 * 109.47016 * 239.99818 * 16 14 12 20 20 C 1.46499 * 120.00359 * 179.97438 * 10 8 7 21 21 C 1.50705 * 109.47390 * 274.72913 * 20 10 8 22 22 C 1.38677 * 120.41497 * 274.85984 * 21 20 10 23 23 C 1.38623 * 118.41783 * 179.78008 * 22 21 20 24 24 C 1.38234 * 119.16072 * 0.51572 * 23 22 21 25 25 N 1.31854 * 120.76445 * 359.72560 * 24 23 22 26 26 C 1.31892 * 121.72212 * 0.02562 * 25 24 23 27 27 H 1.09006 * 109.47254 * 300.00166 * 1 2 3 28 28 H 1.08996 * 109.46987 * 59.99655 * 1 2 3 29 29 H 1.08996 * 109.47136 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47481 * 240.00203 * 2 1 3 31 31 H 1.09002 * 109.47340 * 60.00565 * 3 2 1 32 32 H 1.09008 * 109.47204 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47502 * 300.00029 * 3 2 1 34 34 H 1.08997 * 109.47161 * 59.99878 * 7 4 2 35 35 H 1.09002 * 109.46973 * 300.00428 * 7 4 2 36 36 H 1.08995 * 109.47507 * 132.75558 * 11 10 8 37 37 H 1.08999 * 109.46865 * 12.75173 * 11 10 8 38 38 H 0.96997 * 119.99722 * 175.00151 * 15 14 12 39 39 H 1.09006 * 109.47094 * 34.72996 * 20 10 8 40 40 H 1.08997 * 109.47591 * 154.72317 * 20 10 8 41 41 H 1.07997 * 120.78926 * 0.02562 * 22 21 20 42 42 H 1.07993 * 120.42354 * 180.21749 * 23 22 21 43 43 H 1.07997 * 119.61619 * 179.74674 * 24 23 22 44 44 H 1.08006 * 119.61415 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 2.1346 -0.8551 1.4811 5 8 1.8620 -2.2431 1.3455 6 8 1.6605 -0.1636 2.6284 7 6 3.9266 -0.6031 1.3540 8 6 4.6106 -1.2600 2.5251 9 8 3.9538 -1.8406 3.3633 10 7 5.9520 -1.2015 2.6417 11 6 6.7452 -0.4987 1.6301 12 6 7.4815 -1.5035 0.7820 13 1 8.5529 -1.4309 0.6667 14 6 6.7874 -2.5154 0.1532 15 7 5.4742 -2.5492 0.2153 16 14 7.7124 -3.8385 -0.7867 17 1 9.1716 -3.5747 -0.7058 18 1 7.4154 -5.1668 -0.1930 19 1 7.2857 -3.8253 -2.2089 20 6 6.6169 -1.8396 3.7804 21 6 6.6242 -0.8929 4.9530 22 6 7.6246 0.0590 5.0805 23 6 7.5885 0.9117 6.1729 24 6 6.5698 0.7786 7.0979 25 7 5.6378 -0.1417 6.9469 26 6 5.6378 -0.9666 5.9178 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 4.1445 0.4649 1.3578 35 1 4.2907 -1.0448 0.4264 36 1 7.4633 0.1569 2.1225 37 1 6.0845 0.0952 0.9985 38 1 4.9821 -3.2180 -0.2861 39 1 6.0807 -2.7492 4.0512 40 1 7.6425 -2.0897 3.5090 41 1 8.4108 0.1368 4.3442 42 1 8.3492 1.6673 6.3023 43 1 6.5369 1.4363 7.9538 44 1 4.8573 -1.7076 5.8276 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127020455.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:58:01 Heat of formation + Delta-G solvation = -91.298341 kcal Electronic energy + Delta-G solvation = -28969.102140 eV Core-core repulsion = 25013.267570 eV Total energy + Delta-G solvation = -3955.834570 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.31004 -40.29219 -37.93624 -37.06526 -36.85178 -35.95370 -34.80278 -33.34978 -32.64481 -31.12880 -29.42414 -28.23470 -26.94499 -24.89188 -24.32995 -23.61876 -23.05675 -20.42708 -19.54655 -18.67022 -18.45767 -17.89560 -17.53018 -17.37618 -16.91924 -16.87139 -16.67860 -16.25621 -16.09924 -15.58331 -15.33429 -14.73836 -14.44430 -14.33008 -14.28482 -14.12031 -14.07660 -13.91033 -13.67448 -13.31862 -13.16898 -13.03557 -12.96038 -12.93616 -12.75604 -12.66897 -12.47977 -12.35681 -12.29185 -11.84862 -11.78588 -11.63969 -11.04287 -10.93598 -10.70033 -10.65270 -10.40836 -9.93786 -9.27274 -8.17294 -6.38734 -0.92914 0.16046 0.36826 1.39948 1.48869 1.54922 1.87724 1.93405 2.37498 2.40709 2.84999 2.98176 3.13889 3.23476 3.55191 3.62388 3.70729 3.82525 3.94066 3.98775 4.12943 4.14810 4.19992 4.20976 4.51908 4.61651 4.62614 4.73252 4.75662 4.82458 4.85717 4.86884 4.89774 5.04367 5.08472 5.17567 5.21193 5.25041 5.40365 5.67766 5.82337 5.88141 6.08952 6.68603 6.83449 7.04633 7.33506 7.47401 8.79333 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.008247 B = 0.005901 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3394.403105 B = 4743.531678 C = 7190.997095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.552 4.552 3 C -0.154 4.154 4 S 2.418 3.582 5 O -0.984 6.984 6 O -0.981 6.981 7 C -0.639 4.639 8 C 0.560 3.440 9 O -0.620 6.620 10 N -0.564 5.564 11 C 0.218 3.782 12 C -0.541 4.541 13 H 0.069 0.931 14 C 0.040 3.960 15 N -0.900 5.900 16 Si 0.949 3.051 17 H -0.264 1.264 18 H -0.299 1.299 19 H -0.278 1.278 20 C 0.166 3.834 21 C -0.154 4.154 22 C -0.063 4.063 23 C -0.162 4.162 24 C 0.084 3.916 25 N -0.517 5.517 26 C 0.095 3.905 27 H 0.071 0.929 28 H 0.117 0.883 29 H 0.064 0.936 30 H 0.160 0.840 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.111 0.889 34 H 0.165 0.835 35 H 0.210 0.790 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.267 0.733 39 H 0.052 0.948 40 H 0.101 0.899 41 H 0.156 0.844 42 H 0.176 0.824 43 H 0.186 0.814 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.346 11.574 -1.255 11.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.665 4.665 3 C -0.212 4.212 4 S 2.604 3.396 5 O -0.981 6.981 6 O -0.978 6.978 7 C -0.769 4.769 8 C 0.348 3.652 9 O -0.506 6.506 10 N -0.291 5.291 11 C 0.099 3.901 12 C -0.579 4.579 13 H 0.087 0.913 14 C -0.161 4.161 15 N -0.539 5.539 16 Si 0.776 3.224 17 H -0.188 1.188 18 H -0.226 1.226 19 H -0.203 1.203 20 C 0.042 3.958 21 C -0.158 4.158 22 C -0.089 4.089 23 C -0.182 4.182 24 C -0.074 4.074 25 N -0.226 5.226 26 C -0.061 4.061 27 H 0.090 0.910 28 H 0.136 0.864 29 H 0.083 0.917 30 H 0.178 0.822 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.130 0.870 34 H 0.182 0.818 35 H 0.226 0.774 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.120 0.880 41 H 0.173 0.827 42 H 0.193 0.807 43 H 0.203 0.797 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.192 10.615 0.432 10.626 hybrid contribution 1.217 -1.098 -1.700 2.361 sum 1.025 9.518 -1.267 9.656 Atomic orbital electron populations 1.21815 0.89049 1.04020 1.06073 1.29900 1.07584 1.10668 1.18379 1.21941 1.02820 0.90366 1.06066 1.08020 0.78067 0.75274 0.78213 1.93450 1.83855 1.33264 1.87505 1.93431 1.79437 1.75974 1.48994 1.31019 1.23294 1.11337 1.11285 1.19256 0.83604 0.78661 0.83634 1.90650 1.65772 1.48517 1.45667 1.48167 1.04703 1.53064 1.23166 1.19603 0.91763 0.92147 0.86559 1.21841 0.95003 1.12403 1.28652 0.91288 1.25545 0.95297 0.99091 0.96211 1.69361 1.06811 1.35934 1.41833 0.85649 0.79444 0.78894 0.78423 1.18795 1.22631 1.20312 1.19978 0.99164 0.93149 0.83495 1.21310 0.97099 1.00059 0.97282 1.21825 0.96994 0.92299 0.97779 1.22514 1.00656 1.00595 0.94402 1.23410 0.89770 0.94646 0.99555 1.67681 1.26722 1.05574 1.22648 1.22577 0.96590 0.96786 0.90118 0.91033 0.86407 0.91676 0.82206 0.90805 0.89834 0.87021 0.81778 0.77426 0.92999 0.93016 0.92298 0.92929 0.88038 0.82680 0.80670 0.79724 0.85333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.31 9.19 71.98 0.66 -2.64 16 2 C -0.55 -13.74 3.35 30.59 0.10 -13.64 16 3 C -0.15 -2.93 8.90 71.98 0.64 -2.29 16 4 S 2.42 96.40 3.50 -56.49 -0.20 96.20 16 5 O -0.98 -48.34 17.95 -125.74 -2.26 -50.60 16 6 O -0.98 -44.65 17.91 -125.76 -2.25 -46.91 16 7 C -0.64 -25.37 3.79 71.23 0.27 -25.10 16 8 C 0.56 26.89 6.36 87.66 0.56 27.45 16 9 O -0.62 -34.27 14.73 -0.17 0.00 -34.27 16 10 N -0.56 -24.46 2.11 -830.51 -1.75 -26.21 16 11 C 0.22 8.70 5.65 85.63 0.48 9.19 16 12 C -0.54 -23.73 9.11 25.60 0.23 -23.50 16 13 H 0.07 2.94 7.82 -2.91 -0.02 2.92 16 14 C 0.04 1.84 5.33 84.66 0.45 2.29 16 15 N -0.90 -43.85 8.26 21.45 0.18 -43.67 16 16 Si 0.95 38.63 29.54 68.60 2.03 40.66 16 17 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 18 H -0.30 -13.05 7.11 99.48 0.71 -12.34 16 19 H -0.28 -11.07 7.11 99.48 0.71 -10.36 16 20 C 0.17 6.68 5.43 85.63 0.46 7.15 16 21 C -0.15 -5.50 5.44 -19.77 -0.11 -5.61 16 22 C -0.06 -1.72 9.88 22.47 0.22 -1.49 16 23 C -0.16 -3.65 10.11 22.36 0.23 -3.42 16 24 C 0.08 2.19 11.18 84.69 0.95 3.14 16 25 N -0.52 -18.49 10.36 -195.84 -2.03 -20.52 16 26 C 0.10 3.76 10.67 84.67 0.90 4.66 16 27 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 28 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.16 3.33 8.14 -2.39 -0.02 3.32 16 31 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.08 1.45 6.39 -2.38 -0.02 1.43 16 33 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.16 5.09 6.18 -2.39 -0.01 5.07 16 35 H 0.21 8.46 4.95 -2.39 -0.01 8.45 16 36 H 0.05 1.78 8.14 -2.39 -0.02 1.77 16 37 H 0.05 1.99 5.92 -2.39 -0.01 1.98 16 38 H 0.27 13.06 8.32 -92.71 -0.77 12.29 16 39 H 0.05 2.36 7.49 -2.38 -0.02 2.35 16 40 H 0.10 3.74 7.79 -2.39 -0.02 3.72 16 41 H 0.16 3.55 8.06 -2.91 -0.02 3.52 16 42 H 0.18 2.36 8.06 -2.91 -0.02 2.34 16 43 H 0.19 3.35 8.06 -2.91 -0.02 3.33 16 44 H 0.13 5.70 7.68 -2.91 -0.02 5.67 16 Total: -1.00 -76.49 373.79 0.78 -75.71 By element: Atomic # 1 Polarization: 32.41 SS G_CDS: 1.01 Total: 33.42 kcal Atomic # 6 Polarization: -29.87 SS G_CDS: 6.06 Total: -23.81 kcal Atomic # 7 Polarization: -86.80 SS G_CDS: -3.60 Total: -90.40 kcal Atomic # 8 Polarization: -127.26 SS G_CDS: -4.51 Total: -131.77 kcal Atomic # 14 Polarization: 38.63 SS G_CDS: 2.03 Total: 40.66 kcal Atomic # 16 Polarization: 96.40 SS G_CDS: -0.20 Total: 96.20 kcal Total: -76.49 0.78 -75.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127020455.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.585 kcal (2) G-P(sol) polarization free energy of solvation -76.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds