Wall clock time and date at job start Tue Mar 31 2020 23:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50693 * 109.47539 * 2 1 4 4 O 1.21289 * 120.00165 * 0.02562 * 3 2 1 5 5 N 1.34781 * 120.00336 * 180.02562 * 3 2 1 6 6 C 1.39918 * 120.00146 * 185.27424 * 5 3 2 7 7 C 1.38875 * 120.07075 * 33.29496 * 6 5 3 8 8 C 1.38111 * 119.93285 * 180.02562 * 7 6 5 9 9 C 1.38289 * 120.06784 * 359.97438 * 8 7 6 10 10 S 1.76201 * 119.93076 * 179.97438 * 9 8 7 11 11 O 1.42101 * 106.39720 * 336.45817 * 10 9 8 12 12 O 1.42100 * 106.40007 * 203.53698 * 10 9 8 13 13 N 1.65597 * 107.21723 * 89.99611 * 10 9 8 14 14 C 1.46497 * 120.00020 * 65.00617 * 13 10 9 15 15 C 1.52998 * 109.47104 * 164.72408 * 14 13 10 16 16 C 1.53006 * 109.47096 * 179.97438 * 15 14 13 17 17 C 1.50701 * 109.46844 * 179.97438 * 16 15 14 18 18 H 1.08001 * 120.00456 * 359.97438 * 17 16 15 19 19 C 1.37885 * 119.99738 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99718 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 119.99911 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47209 * 89.99710 * 21 19 17 23 23 H 1.48499 * 109.47244 * 209.99356 * 21 19 17 24 24 H 1.48495 * 109.47290 * 329.99986 * 21 19 17 25 25 C 1.38287 * 120.14082 * 0.25443 * 9 8 7 26 26 C 1.38115 * 120.06714 * 359.49058 * 25 9 8 27 27 H 1.09002 * 109.46753 * 59.99539 * 1 2 3 28 28 H 1.08999 * 109.47043 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46624 * 299.99873 * 1 2 3 30 30 H 1.09007 * 109.46624 * 240.00127 * 2 1 3 31 31 H 1.09008 * 109.47101 * 120.00682 * 2 1 3 32 32 H 0.96999 * 119.99681 * 5.27767 * 5 3 2 33 33 H 1.07996 * 120.03562 * 359.97438 * 7 6 5 34 34 H 1.07994 * 119.97282 * 179.97438 * 8 7 6 35 35 H 0.97007 * 119.99763 * 244.72476 * 13 10 9 36 36 H 1.09003 * 109.46603 * 284.71946 * 14 13 10 37 37 H 1.08991 * 109.47315 * 44.72001 * 14 13 10 38 38 H 1.09003 * 109.47014 * 299.99287 * 15 14 13 39 39 H 1.08998 * 109.47711 * 59.99499 * 15 14 13 40 40 H 1.08994 * 109.47085 * 299.99825 * 16 15 14 41 41 H 1.09005 * 109.46893 * 59.99792 * 16 15 14 42 42 H 0.96997 * 119.99917 * 180.02562 * 20 19 17 43 43 H 1.07996 * 119.96386 * 179.74550 * 25 9 8 44 44 H 1.08001 * 120.03146 * 180.25507 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4207 0.0000 4 8 1.2444 2.3427 0.0005 5 7 3.3576 1.6670 -0.0005 6 6 3.8250 2.9811 0.1109 7 6 3.1221 3.9077 0.8698 8 6 3.5858 5.2041 0.9774 9 6 4.7491 5.5799 0.3307 10 16 5.3370 7.2350 0.4699 11 8 4.2085 8.0358 0.7932 12 8 6.1544 7.4675 -0.6690 13 7 6.3414 7.2895 1.7854 14 6 7.5943 6.5304 1.7822 15 6 8.4985 7.0340 2.9090 16 6 9.8069 6.2408 2.9061 17 6 10.6978 6.7373 4.0156 18 1 10.3643 7.5387 4.6582 19 6 11.9390 6.1691 4.2096 20 7 12.3452 5.1935 3.4267 21 14 13.0435 6.7849 5.5844 22 1 12.7708 6.0116 6.8225 23 1 14.4653 6.6085 5.1937 24 1 12.7725 8.2241 5.8300 25 6 5.4487 4.6608 -0.4296 26 6 4.9930 3.3614 -0.5368 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8901 30 1 1.8933 -0.5139 -0.8901 31 1 1.8934 -0.5140 0.8900 32 1 3.9872 0.9332 -0.0782 33 1 2.2135 3.6150 1.3747 34 1 3.0396 5.9253 1.5671 35 1 6.1020 7.8273 2.5564 36 1 7.3787 5.4728 1.9345 37 1 8.0979 6.6644 0.8249 38 1 8.7141 8.0916 2.7567 39 1 7.9950 6.9001 3.8664 40 1 9.5911 5.1834 3.0586 41 1 10.3107 6.3744 1.9487 42 1 13.2182 4.7935 3.5634 43 1 6.3546 4.9584 -0.9368 44 1 5.5422 2.6430 -1.1275 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171713835.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:58 Heat of formation + Delta-G solvation = -129.408064 kcal Electronic energy + Delta-G solvation = -26400.218779 eV Core-core repulsion = 22442.731648 eV Total energy + Delta-G solvation = -3957.487131 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.73889 -39.70130 -38.38932 -37.35703 -36.98463 -36.07786 -35.14274 -33.85518 -32.61048 -32.17174 -30.97463 -28.17833 -26.07613 -24.77034 -24.21939 -23.59064 -22.20430 -21.39232 -20.50946 -19.25875 -18.69829 -18.55282 -18.33046 -18.12794 -17.21579 -16.83838 -16.46932 -16.10563 -16.05247 -15.70478 -15.51536 -15.30524 -14.72245 -14.49033 -14.35162 -14.27152 -14.04610 -13.99687 -13.70303 -13.26092 -13.21056 -13.19275 -13.15328 -12.78025 -12.73041 -12.55079 -12.50806 -12.29525 -12.11930 -12.05013 -11.76008 -11.65505 -11.36734 -11.12681 -11.04816 -10.51118 -10.42159 -10.14103 -9.58555 -8.16785 -6.26278 -0.67147 -0.33516 0.22153 1.39055 1.42976 1.43780 1.54592 1.85371 2.01981 2.42828 2.44611 2.76322 3.17102 3.28030 3.55061 3.75620 3.81344 4.07743 4.13008 4.18488 4.23638 4.29619 4.32061 4.38817 4.53902 4.68861 4.72738 4.77890 4.84928 4.97228 5.02155 5.02532 5.02615 5.06853 5.21890 5.22716 5.26587 5.35425 5.57619 5.77091 5.79847 5.90160 6.09399 6.26350 6.29180 6.90633 6.98157 7.42349 8.94817 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012478 B = 0.002347 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.489063 B =11929.499415 C =13489.635819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.133 4.133 3 C 0.505 3.495 4 O -0.560 6.560 5 N -0.665 5.665 6 C 0.199 3.801 7 C -0.160 4.160 8 C -0.008 4.008 9 C -0.699 4.699 10 S 2.716 3.284 11 O -0.986 6.986 12 O -0.986 6.986 13 N -1.107 6.107 14 C 0.121 3.879 15 C -0.106 4.106 16 C 0.022 3.978 17 C -0.541 4.541 18 H 0.060 0.940 19 C 0.000 4.000 20 N -0.931 5.931 21 Si 0.961 3.039 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.266 1.266 25 C -0.010 4.010 26 C -0.163 4.163 27 H 0.045 0.955 28 H 0.087 0.913 29 H 0.046 0.954 30 H 0.127 0.873 31 H 0.125 0.875 32 H 0.434 0.566 33 H 0.137 0.863 34 H 0.149 0.851 35 H 0.426 0.574 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.058 0.942 39 H 0.066 0.934 40 H 0.002 0.998 41 H -0.003 1.003 42 H 0.263 0.737 43 H 0.154 0.846 44 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.183 -13.042 -7.496 25.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.172 4.172 3 C 0.296 3.704 4 O -0.437 6.437 5 N -0.312 5.312 6 C 0.102 3.898 7 C -0.182 4.182 8 C -0.028 4.028 9 C -0.789 4.789 10 S 2.808 3.192 11 O -0.977 6.977 12 O -0.976 6.976 13 N -0.869 5.869 14 C -0.004 4.004 15 C -0.145 4.145 16 C -0.016 4.016 17 C -0.580 4.580 18 H 0.078 0.922 19 C -0.198 4.198 20 N -0.571 5.571 21 Si 0.786 3.214 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.190 1.190 25 C -0.030 4.030 26 C -0.184 4.184 27 H 0.065 0.935 28 H 0.106 0.894 29 H 0.065 0.935 30 H 0.145 0.855 31 H 0.143 0.857 32 H 0.275 0.725 33 H 0.155 0.845 34 H 0.166 0.834 35 H 0.263 0.737 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.021 0.979 41 H 0.016 0.984 42 H 0.072 0.928 43 H 0.172 0.828 44 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -21.814 -12.003 -8.229 26.223 hybrid contribution 0.904 -0.424 1.079 1.471 sum -20.909 -12.427 -7.150 25.352 Atomic orbital electron populations 1.21581 0.93484 1.02937 1.01930 1.21747 0.98094 0.89930 1.07476 1.21963 0.81030 0.93861 0.73554 1.90748 1.56079 1.48140 1.48718 1.43777 1.08707 1.06690 1.71999 1.18190 0.93513 0.85727 0.92358 1.21289 1.02048 0.93747 1.01079 1.20922 0.92035 0.96304 0.93539 1.30666 1.08639 1.25100 1.14449 1.00911 0.72097 0.73651 0.72571 1.93538 1.51826 1.67865 1.84448 1.93545 1.69125 1.84780 1.50182 1.55260 1.32892 1.62268 1.36466 1.21368 0.83070 0.95325 1.00681 1.21632 0.95455 1.00001 0.97378 1.18991 0.92123 0.94931 0.95558 1.21705 1.01561 1.18883 1.15803 0.92165 1.25925 0.99717 0.95282 0.98899 1.70075 1.20674 1.26248 1.40113 0.85505 0.77673 0.79020 0.79181 1.19819 1.20985 1.19006 1.21056 0.97616 0.92248 0.92041 1.21316 0.97708 0.97279 1.02049 0.93531 0.89379 0.93512 0.85523 0.85656 0.72508 0.84507 0.83352 0.73733 0.90740 0.90852 0.92323 0.91521 0.97947 0.98434 0.92831 0.82809 0.81300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.20 71.98 0.66 -0.59 16 2 C -0.13 -0.72 6.42 29.85 0.19 -0.53 16 3 C 0.51 7.32 7.57 87.65 0.66 7.99 16 4 O -0.56 -13.52 13.67 -3.06 -0.04 -13.57 16 5 N -0.66 -7.97 5.34 -303.51 -1.62 -9.60 16 6 C 0.20 3.79 6.28 38.15 0.24 4.03 16 7 C -0.16 -3.72 8.66 22.39 0.19 -3.52 16 8 C -0.01 -0.19 9.51 22.25 0.21 0.02 16 9 C -0.70 -17.37 5.95 22.29 0.13 -17.23 16 10 S 2.72 74.94 5.74 -56.49 -0.32 74.61 16 11 O -0.99 -30.92 17.27 -128.00 -2.21 -33.13 16 12 O -0.99 -32.65 16.73 -128.00 -2.14 -34.79 16 13 N -1.11 -28.78 6.00 -187.50 -1.12 -29.90 16 14 C 0.12 3.70 6.22 86.38 0.54 4.23 16 15 C -0.11 -3.94 5.29 30.60 0.16 -3.78 16 16 C 0.02 1.09 4.97 29.85 0.15 1.23 16 17 C -0.54 -29.71 9.11 25.60 0.23 -29.48 16 18 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 19 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 20 N -0.93 -54.99 13.29 21.45 0.28 -54.70 16 21 Si 0.96 43.34 29.54 68.60 2.03 45.36 16 22 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 23 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 24 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 25 C -0.01 -0.21 9.51 22.25 0.21 0.00 16 26 C -0.16 -2.89 9.96 22.39 0.22 -2.67 16 27 H 0.05 0.57 8.10 -2.39 -0.02 0.55 16 28 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.05 0.57 8.10 -2.38 -0.02 0.55 16 30 H 0.13 0.02 8.14 -2.38 -0.02 0.00 16 31 H 0.13 0.10 8.14 -2.38 -0.02 0.09 16 32 H 0.43 1.67 8.82 -92.71 -0.82 0.85 16 33 H 0.14 3.25 6.41 -2.91 -0.02 3.23 16 34 H 0.15 3.25 7.61 -2.91 -0.02 3.23 16 35 H 0.43 9.53 8.65 -96.74 -0.84 8.69 16 36 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.07 2.30 7.74 -2.39 -0.02 2.29 16 38 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 40 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 41 H 0.00 -0.15 8.14 -2.38 -0.02 -0.17 16 42 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 43 H 0.15 3.13 7.60 -2.91 -0.02 3.11 16 44 H 0.17 1.80 8.06 -2.91 -0.02 1.77 16 Total: -1.00 -79.79 385.32 -1.51 -81.29 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -0.63 Total: 14.27 kcal Atomic # 6 Polarization: -44.13 SS G_CDS: 4.27 Total: -39.85 kcal Atomic # 7 Polarization: -91.74 SS G_CDS: -2.46 Total: -94.20 kcal Atomic # 8 Polarization: -77.09 SS G_CDS: -4.40 Total: -81.48 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.36 kcal Atomic # 16 Polarization: 74.94 SS G_CDS: -0.32 Total: 74.61 kcal Total: -79.79 -1.51 -81.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171713835.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.115 kcal (2) G-P(sol) polarization free energy of solvation -79.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds