Wall clock time and date at job start Wed Apr 1 2020 00:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53011 * 109.46665 * 2 1 4 4 S 1.81401 * 109.47041 * 180.02562 * 3 2 1 5 5 O 1.42103 * 110.54212 * 68.37584 * 4 3 2 6 6 O 1.42106 * 110.54000 * 291.62717 * 4 3 2 7 7 N 1.65595 * 104.44821 * 180.02562 * 4 3 2 8 8 C 1.38866 * 120.00365 * 59.97428 * 7 4 3 9 9 C 1.38959 * 120.17613 * 35.60586 * 8 7 4 10 10 C 1.37952 * 120.06126 * 180.28044 * 9 8 7 11 11 C 1.38608 * 120.42869 * 359.74551 * 10 9 8 12 12 C 1.37753 * 120.34685 * 359.97438 * 11 10 9 13 13 C 1.39728 * 119.92975 * 0.02562 * 12 11 10 14 14 C 1.47432 * 120.20696 * 179.97438 * 13 12 11 15 15 O 1.21609 * 119.99913 * 179.97438 * 14 13 12 16 16 N 1.34772 * 120.00011 * 359.97438 * 14 13 12 17 17 C 1.46505 * 120.00044 * 179.72607 * 16 14 13 18 18 H 1.09006 * 109.47042 * 35.27108 * 17 16 14 19 19 C 1.53000 * 109.47131 * 275.27667 * 17 16 14 20 20 C 1.50693 * 109.47221 * 155.27166 * 17 16 14 21 21 H 1.07998 * 120.00075 * 35.13480 * 20 17 16 22 22 C 1.37878 * 119.99925 * 215.13458 * 20 17 16 23 23 N 1.31523 * 120.00134 * 182.87958 * 22 20 17 24 24 Si 1.86795 * 120.00303 * 2.87825 * 22 20 17 25 25 H 1.48498 * 109.46807 * 84.65621 * 24 22 20 26 26 H 1.48499 * 109.47552 * 204.65515 * 24 22 20 27 27 H 1.48495 * 109.47320 * 324.65917 * 24 22 20 28 28 H 1.08994 * 109.47334 * 299.99232 * 1 2 3 29 29 H 1.08995 * 109.47368 * 60.00340 * 1 2 3 30 30 H 1.09004 * 109.46660 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47249 * 240.00758 * 2 1 3 32 32 H 1.08995 * 109.47368 * 119.99660 * 2 1 3 33 33 H 1.08994 * 109.46618 * 60.00329 * 3 2 1 34 34 H 1.08995 * 109.46949 * 299.99916 * 3 2 1 35 35 H 0.97005 * 119.99605 * 239.97214 * 7 4 3 36 36 H 1.07996 * 119.96614 * 0.02562 * 9 8 7 37 37 H 1.08002 * 119.78525 * 179.76693 * 10 9 8 38 38 H 1.08001 * 119.82859 * 180.02562 * 11 10 9 39 39 H 1.08005 * 120.03056 * 179.97438 * 12 11 10 40 40 H 0.96999 * 120.00070 * 0.02562 * 16 14 13 41 41 H 1.08999 * 109.47134 * 55.93104 * 19 17 16 42 42 H 1.08998 * 109.47151 * 175.93977 * 19 17 16 43 43 H 1.09000 * 109.46992 * 295.93770 * 19 17 16 44 44 H 0.96998 * 120.00186 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 16 3.8539 1.4428 -0.0008 5 8 4.3520 0.9526 -1.2381 6 8 4.3530 0.9522 1.2360 7 7 4.2670 3.0464 0.0000 8 6 3.8579 3.8683 1.0419 9 6 3.7912 3.3721 2.3381 10 6 3.3789 4.1891 3.3704 11 6 3.0337 5.5091 3.1261 12 6 3.0990 6.0205 1.8486 13 6 3.5146 5.2060 0.7920 14 6 3.5862 5.7469 -0.5776 15 8 3.9488 5.0348 -1.4943 16 7 3.2497 7.0304 -0.8138 17 6 3.3266 7.5695 -2.1738 18 1 3.0513 6.7937 -2.8883 19 6 4.7551 8.0391 -2.4563 20 6 2.3793 8.7339 -2.3069 21 1 2.2183 9.3974 -1.4701 22 6 1.7182 8.9523 -3.4970 23 7 0.9353 10.0004 -3.6316 24 14 1.9345 7.7595 -4.9181 25 1 0.9916 6.6234 -4.7586 26 1 1.6552 8.4585 -6.1982 27 1 3.3286 7.2480 -4.9274 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5137 -0.8901 32 1 1.8933 -0.5137 0.8900 33 1 1.6765 1.9563 0.8900 34 1 1.6765 1.9564 -0.8900 35 1 4.7947 3.4116 -0.7273 36 1 4.0584 2.3448 2.5369 37 1 3.3251 3.7978 4.3756 38 1 2.7127 6.1402 3.9415 39 1 2.8285 7.0497 1.6639 40 1 2.9608 7.5984 -0.0825 41 1 5.4482 7.2146 -2.2898 42 1 4.8297 8.3734 -3.4911 43 1 5.0049 8.8641 -1.7891 44 1 0.4705 10.1543 -4.4690 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194636681.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:00:26 Heat of formation + Delta-G solvation = -87.804626 kcal Electronic energy + Delta-G solvation = -28090.537300 eV Core-core repulsion = 24134.854229 eV Total energy + Delta-G solvation = -3955.683071 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.29223 -38.28664 -37.25879 -36.20064 -35.56732 -35.19250 -34.63652 -32.56949 -31.50124 -29.56835 -29.01360 -28.00865 -25.39479 -23.98092 -22.84151 -22.19189 -21.11008 -19.89355 -19.48542 -18.28000 -17.74087 -17.50250 -16.68442 -16.47952 -16.10524 -15.69880 -15.16686 -15.13602 -14.72918 -14.33336 -14.15023 -14.00381 -13.82333 -13.33700 -13.03314 -12.95667 -12.81858 -12.61566 -12.58961 -12.44941 -12.31085 -12.14696 -12.00419 -11.78414 -11.56612 -11.34353 -11.27617 -11.19804 -10.95596 -10.87972 -10.67789 -10.60928 -9.95480 -9.32747 -9.28019 -9.12082 -8.80047 -8.45174 -8.16024 -6.30543 -4.35279 -0.03780 0.86160 1.21816 2.41815 3.09857 3.20795 3.29081 3.35804 3.47540 3.80336 3.87776 3.98033 4.19927 4.25836 4.45536 4.69941 4.75453 4.77387 4.92090 4.98385 5.02590 5.11918 5.26326 5.30108 5.32133 5.42707 5.59730 5.62583 5.71362 5.84469 5.90239 6.10810 6.24659 6.27296 6.37576 6.44481 6.59446 6.69977 6.84528 7.00381 7.11548 7.28653 7.44678 8.02331 8.44049 8.68031 8.79644 9.30722 10.80964 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011726 B = 0.003795 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.379785 B = 7376.493016 C = 8341.994604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.115 4.115 3 C -0.626 4.626 4 S 2.603 3.397 5 O -0.947 6.947 6 O -0.954 6.954 7 N -1.039 6.039 8 C 0.210 3.790 9 C -0.193 4.193 10 C -0.069 4.069 11 C -0.146 4.146 12 C -0.061 4.061 13 C -0.153 4.153 14 C 0.546 3.454 15 O -0.559 6.559 16 N -0.692 5.692 17 C 0.230 3.770 18 H 0.052 0.948 19 C -0.148 4.148 20 C -0.533 4.533 21 H 0.079 0.921 22 C 0.082 3.918 23 N -0.887 5.887 24 Si 0.874 3.126 25 H -0.273 1.273 26 H -0.285 1.285 27 H -0.260 1.260 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.135 0.865 34 H 0.140 0.860 35 H 0.441 0.559 36 H 0.165 0.835 37 H 0.131 0.869 38 H 0.130 0.870 39 H 0.135 0.865 40 H 0.394 0.606 41 H 0.030 0.970 42 H 0.054 0.946 43 H 0.047 0.953 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.955 -15.217 13.878 20.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C -0.756 4.756 4 S 2.698 3.302 5 O -0.938 6.938 6 O -0.944 6.944 7 N -0.793 5.793 8 C 0.109 3.891 9 C -0.214 4.214 10 C -0.088 4.088 11 C -0.165 4.165 12 C -0.081 4.081 13 C -0.161 4.161 14 C 0.333 3.667 15 O -0.440 6.440 16 N -0.340 5.340 17 C 0.128 3.872 18 H 0.070 0.930 19 C -0.207 4.207 20 C -0.570 4.570 21 H 0.097 0.903 22 C -0.122 4.122 23 N -0.523 5.523 24 Si 0.701 3.299 25 H -0.199 1.199 26 H -0.211 1.211 27 H -0.184 1.184 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.154 0.846 34 H 0.158 0.842 35 H 0.286 0.714 36 H 0.182 0.818 37 H 0.149 0.851 38 H 0.148 0.852 39 H 0.152 0.848 40 H 0.229 0.771 41 H 0.049 0.951 42 H 0.073 0.927 43 H 0.066 0.934 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.649 -16.390 13.066 21.026 hybrid contribution -0.570 0.587 -0.791 1.138 sum 1.080 -15.804 12.275 20.040 Atomic orbital electron populations 1.21715 0.93630 1.02281 1.02746 1.21268 0.98965 0.91592 1.03571 1.30588 1.26091 1.06305 1.12636 1.05333 0.77945 0.72399 0.74485 1.93626 1.78018 1.77575 1.44540 1.93523 1.77335 1.78475 1.45036 1.53458 1.64792 1.28689 1.32366 1.17408 0.94482 0.90096 0.87077 1.21986 1.05158 1.03854 0.90406 1.21154 0.95478 0.93368 0.98838 1.21115 1.02649 0.95902 0.96855 1.21343 0.95227 0.99527 0.91980 1.20170 1.06543 0.94451 0.94930 1.18140 0.78328 0.83068 0.87208 1.90562 1.49541 1.58606 1.45328 1.46615 1.64313 1.10118 1.12917 1.19174 0.93888 0.94506 0.79607 0.93036 1.22229 0.97856 0.99421 1.01216 1.20985 1.25025 1.10488 1.00547 0.90268 1.24933 0.93776 0.95115 0.98414 1.69874 1.28740 1.27107 1.26599 0.86902 0.79937 0.81353 0.81741 1.19877 1.21103 1.18418 0.92108 0.92009 0.91902 0.90272 0.90263 0.84633 0.84210 0.71373 0.81798 0.85096 0.85220 0.84752 0.77134 0.95125 0.92731 0.93361 0.92151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.91 37.16 0.37 -0.72 16 2 C -0.11 -0.97 5.94 -26.73 -0.16 -1.13 16 3 C -0.63 -6.12 5.89 37.16 0.22 -5.90 16 4 S 2.60 32.91 5.23 -107.50 -0.56 32.35 16 5 O -0.95 -15.08 18.08 -57.54 -1.04 -16.12 16 6 O -0.95 -12.84 15.04 -57.54 -0.87 -13.71 16 7 N -1.04 -14.71 4.97 32.55 0.16 -14.55 16 8 C 0.21 2.86 6.12 -83.61 -0.51 2.35 16 9 C -0.19 -2.21 9.23 -39.42 -0.36 -2.57 16 10 C -0.07 -0.65 10.03 -39.55 -0.40 -1.05 16 11 C -0.15 -1.39 10.02 -39.62 -0.40 -1.78 16 12 C -0.06 -0.72 9.53 -39.20 -0.37 -1.09 16 13 C -0.15 -2.24 5.89 -104.80 -0.62 -2.86 16 14 C 0.55 10.05 7.72 -12.52 -0.10 9.95 16 15 O -0.56 -11.63 13.58 5.27 0.07 -11.56 16 16 N -0.69 -13.25 5.02 -56.01 -0.28 -13.53 16 17 C 0.23 5.27 2.19 -69.08 -0.15 5.12 16 18 H 0.05 1.28 4.82 -51.93 -0.25 1.03 16 19 C -0.15 -3.15 9.46 37.16 0.35 -2.80 16 20 C -0.53 -13.81 9.05 -34.44 -0.31 -14.12 16 21 H 0.08 2.15 8.06 -52.49 -0.42 1.73 16 22 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 23 N -0.89 -25.47 13.96 55.43 0.77 -24.70 16 24 Si 0.87 21.08 26.86 -169.99 -4.57 16.51 16 25 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 26 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 27 H -0.26 -6.16 6.76 56.52 0.38 -5.78 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.14 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.14 1.37 8.14 -51.93 -0.42 0.95 16 35 H 0.44 6.89 6.52 -34.46 -0.22 6.66 16 36 H 0.16 1.85 5.17 -52.49 -0.27 1.58 16 37 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 38 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 39 H 0.13 1.40 6.40 -52.48 -0.34 1.07 16 40 H 0.39 6.55 6.62 -40.82 -0.27 6.28 16 41 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.05 1.17 7.93 -51.93 -0.41 0.76 16 43 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 373.41 15.07 5.63 5.63 Total: -1.00 -33.59 373.41 -9.21 -42.80 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: -5.99 Total: 11.34 kcal Atomic # 6 Polarization: -11.92 SS G_CDS: -2.54 Total: -14.46 kcal Atomic # 7 Polarization: -53.43 SS G_CDS: 0.65 Total: -52.77 kcal Atomic # 8 Polarization: -39.55 SS G_CDS: -1.83 Total: -41.39 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.57 Total: 16.51 kcal Atomic # 16 Polarization: 32.91 SS G_CDS: -0.56 Total: 32.35 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.59 -9.21 -42.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194636681.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.007 kcal (2) G-P(sol) polarization free energy of solvation -33.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds