Wall clock time and date at job start Wed Apr 1 2020 00:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.46820 * 2 1 4 4 C 1.52998 * 109.46785 * 120.00029 * 2 1 3 5 5 C 1.53002 * 109.47130 * 185.00304 * 4 2 1 6 6 S 1.81399 * 109.47596 * 180.02562 * 5 4 2 7 7 C 1.81394 * 103.00064 * 180.02562 * 6 5 4 8 8 O 1.42097 * 109.47039 * 63.60781 * 6 5 4 9 9 N 1.46504 * 109.47166 * 239.99934 * 2 1 3 10 10 C 1.34770 * 120.00015 * 85.00198 * 9 2 1 11 11 O 1.21594 * 120.00123 * 359.97438 * 10 9 2 12 12 N 1.34776 * 120.00206 * 179.97438 * 10 9 2 13 13 C 1.39949 * 120.00172 * 174.52167 * 12 10 9 14 14 C 1.38958 * 120.03330 * 325.04306 * 13 12 10 15 15 C 1.38161 * 120.06396 * 180.27124 * 14 13 12 16 16 C 1.38163 * 120.14006 * 0.02562 * 15 14 13 17 17 C 1.38912 * 120.07016 * 359.97438 * 16 15 14 18 18 O 1.35746 * 120.03729 * 179.97438 * 17 16 15 19 19 C 1.34829 * 117.00520 * 185.66696 * 18 17 16 20 20 H 1.08007 * 119.99646 * 5.38270 * 19 18 17 21 21 C 1.38649 * 120.00180 * 185.37972 * 19 18 17 22 22 N 1.31556 * 120.00034 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99916 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47444 * 59.99814 * 23 21 19 25 25 H 1.48504 * 109.47174 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.46926 * 300.00202 * 23 21 19 27 27 C 1.38705 * 120.03218 * 145.31673 * 13 12 10 28 28 H 1.08996 * 109.47561 * 300.00098 * 1 2 3 29 29 H 1.09004 * 109.47205 * 60.00507 * 1 2 3 30 30 H 1.09006 * 109.47010 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47520 * 304.99788 * 4 2 1 32 32 H 1.08996 * 109.47509 * 65.00386 * 4 2 1 33 33 H 1.09001 * 109.47013 * 300.00179 * 5 4 2 34 34 H 1.09009 * 109.47093 * 59.99495 * 5 4 2 35 35 H 1.08992 * 109.47324 * 59.99806 * 7 6 5 36 36 H 1.09004 * 109.46847 * 180.02562 * 7 6 5 37 37 H 1.09004 * 109.47336 * 299.99675 * 7 6 5 38 38 H 0.96997 * 119.99642 * 264.99849 * 9 2 1 39 39 H 0.96999 * 120.00088 * 354.52290 * 12 10 9 40 40 H 1.07995 * 119.96556 * 0.27630 * 14 13 12 41 41 H 1.08002 * 119.92797 * 180.02562 * 15 14 13 42 42 H 1.07997 * 119.97069 * 180.02562 * 16 15 14 43 43 H 0.97006 * 119.99549 * 179.97438 * 22 21 19 44 44 H 1.08000 * 120.06765 * 359.69956 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5648 -0.6133 1.3138 6 16 4.1695 -1.4690 2.7945 7 6 5.9655 -1.2337 2.6969 8 8 3.8668 -2.8540 2.6980 9 7 2.0184 -0.6906 -1.1962 10 6 2.1471 -0.0183 -2.3571 11 8 1.8576 1.1614 -2.4118 12 7 2.5969 -0.6535 -3.4574 13 6 2.6224 0.0120 -4.6883 14 6 1.6266 0.9282 -5.0043 15 6 1.6481 1.5814 -6.2216 16 6 2.6586 1.3256 -7.1284 17 6 3.6569 0.4108 -6.8184 18 8 4.6492 0.1597 -7.7100 19 6 5.5189 -0.8221 -7.3977 20 1 5.3580 -1.4259 -6.5168 21 6 6.6198 -1.0566 -8.2074 22 7 6.8160 -0.3208 -9.2801 23 14 7.8243 -2.4173 -7.7750 24 1 7.1120 -3.7201 -7.7518 25 1 8.9062 -2.4621 -8.7912 26 1 8.4126 -2.1511 -6.4377 27 6 3.6385 -0.2466 -5.5963 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 1.6053 -0.2618 2.1370 32 1 1.7517 -1.7715 1.2056 33 1 3.9995 -1.0727 0.4261 34 1 3.8531 0.4371 1.3574 35 1 6.1933 -0.1679 2.7066 36 1 6.4420 -1.7153 3.5509 37 1 6.3405 -1.6770 1.7744 38 1 2.2491 -1.6318 -1.1526 39 1 2.9029 -1.5719 -3.3962 40 1 0.8352 1.1299 -4.2977 41 1 0.8732 2.2934 -6.4648 42 1 2.6730 1.8381 -8.0789 43 1 7.5864 -0.4846 -9.8463 44 1 4.4138 -0.9580 -5.3528 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268858934.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:29 Heat of formation + Delta-G solvation = -68.205864 kcal Electronic energy + Delta-G solvation = -26546.237468 eV Core-core repulsion = 22591.404263 eV Total energy + Delta-G solvation = -3954.833205 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.44864 -38.86468 -37.23810 -36.10530 -36.00307 -34.19967 -32.54754 -32.18361 -30.29542 -29.31694 -29.13000 -28.27151 -25.31292 -24.46243 -22.70978 -21.78857 -21.00541 -20.45426 -18.67856 -17.90095 -17.83089 -17.38510 -16.40811 -15.69559 -15.53902 -15.30609 -15.20408 -14.92159 -14.84953 -14.42124 -14.21351 -14.00472 -13.82940 -13.62597 -13.53839 -13.25831 -12.98247 -12.94376 -12.52289 -12.32598 -12.23686 -11.94890 -11.75886 -11.68171 -11.53112 -11.21979 -11.12662 -10.94976 -10.80797 -10.48266 -10.43622 -10.02254 -9.64644 -9.45962 -9.20184 -8.80663 -8.65355 -7.70412 -7.13017 -6.45174 -4.04866 1.11706 2.07311 2.20467 2.40948 2.69142 3.10644 3.11240 3.14592 3.31964 3.38914 3.95057 4.18173 4.37356 4.48585 4.56014 4.62552 4.72418 4.83242 5.08887 5.09774 5.17848 5.22047 5.28969 5.35647 5.47197 5.52230 5.62028 5.68198 5.80540 6.00717 6.03235 6.10183 6.26053 6.27472 6.42277 6.57377 6.80849 7.01784 7.10959 7.28748 7.34489 7.43755 7.83849 7.98891 8.02884 8.64679 9.00174 9.71218 10.72936 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009909 B = 0.002683 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2824.933958 B =10432.349675 C =12851.193043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.165 3.835 3 H 0.093 0.907 4 C -0.107 4.107 5 C -0.449 4.449 6 S 1.240 4.760 7 C -0.490 4.490 8 O -0.854 6.854 9 N -0.743 5.743 10 C 0.704 3.296 11 O -0.570 6.570 12 N -0.684 5.684 13 C 0.199 3.801 14 C -0.204 4.204 15 C -0.063 4.063 16 C -0.202 4.202 17 C 0.169 3.831 18 O -0.176 6.176 19 C -0.392 4.392 20 H 0.089 0.911 21 C 0.040 3.960 22 N -0.862 5.862 23 Si 0.939 3.061 24 H -0.270 1.270 25 H -0.277 1.277 26 H -0.271 1.271 27 C -0.258 4.258 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.092 0.908 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.120 0.880 35 H 0.113 0.887 36 H 0.105 0.895 37 H 0.080 0.920 38 H 0.393 0.607 39 H 0.401 0.599 40 H 0.118 0.882 41 H 0.116 0.884 42 H 0.118 0.882 43 H 0.270 0.730 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.882 -0.127 25.965 27.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.059 3.941 3 H 0.111 0.889 4 C -0.146 4.146 5 C -0.586 4.586 6 S 1.439 4.561 7 C -0.647 4.647 8 O -0.849 6.849 9 N -0.400 5.400 10 C 0.404 3.596 11 O -0.446 6.446 12 N -0.331 5.331 13 C 0.106 3.894 14 C -0.225 4.225 15 C -0.082 4.082 16 C -0.222 4.222 17 C 0.115 3.885 18 O -0.080 6.080 19 C -0.468 4.468 20 H 0.106 0.894 21 C -0.164 4.164 22 N -0.497 5.497 23 Si 0.764 3.236 24 H -0.195 1.195 25 H -0.202 1.202 26 H -0.197 1.197 27 C -0.280 4.280 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.111 0.889 32 H 0.092 0.908 33 H 0.106 0.894 34 H 0.139 0.861 35 H 0.132 0.868 36 H 0.123 0.877 37 H 0.100 0.900 38 H 0.227 0.773 39 H 0.235 0.765 40 H 0.136 0.864 41 H 0.134 0.866 42 H 0.136 0.864 43 H 0.080 0.920 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.424 0.564 26.249 27.573 hybrid contribution 2.014 -2.517 -1.623 3.609 sum -6.411 -1.954 24.626 25.522 Atomic orbital electron populations 1.22223 0.95181 1.02170 1.02881 1.20804 0.93737 0.97341 0.82257 0.88887 1.21515 0.92346 1.02043 0.98687 1.27712 1.02974 1.11268 1.16671 1.70380 0.87757 0.94524 1.03444 1.27630 1.21233 1.08529 1.07342 1.93140 1.78682 1.30772 1.82346 1.45262 1.72063 1.13495 1.09136 1.15909 0.78489 0.85132 0.80061 1.90945 1.55863 1.13726 1.84052 1.42629 1.67460 1.16393 1.06634 1.17169 0.94147 0.94893 0.83212 1.20527 1.00555 1.03195 0.98186 1.20521 0.96981 0.97882 0.92769 1.20235 0.96546 1.03870 1.01547 1.19070 0.89175 0.92261 0.88025 1.84017 1.34098 1.50161 1.39692 1.21207 1.04132 1.09506 1.12002 0.89405 1.25257 0.97110 0.98647 0.95416 1.70027 1.28499 1.38059 1.13164 0.85818 0.79404 0.79969 0.78423 1.19548 1.20210 1.19676 1.20786 1.01088 1.09737 0.96391 0.91467 0.91614 0.92579 0.88939 0.90833 0.89402 0.86134 0.86839 0.87653 0.90037 0.77306 0.76452 0.86387 0.86635 0.86395 0.91970 0.85423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.37 9.48 37.16 0.35 -1.01 16 2 C 0.16 1.43 2.57 -67.93 -0.17 1.26 16 3 H 0.09 0.94 7.58 -51.93 -0.39 0.54 16 4 C -0.11 -0.63 4.76 -26.73 -0.13 -0.76 16 5 C -0.45 -2.57 5.81 37.16 0.22 -2.36 16 6 S 1.24 6.17 13.80 -107.50 -1.48 4.68 16 7 C -0.49 -2.48 10.74 101.05 1.09 -1.40 16 8 O -0.85 -10.42 18.14 -35.23 -0.64 -11.06 16 9 N -0.74 -7.91 4.53 -58.68 -0.27 -8.18 16 10 C 0.70 10.68 8.25 -86.92 -0.72 9.97 16 11 O -0.57 -10.67 13.80 5.28 0.07 -10.60 16 12 N -0.68 -10.72 5.34 -14.24 -0.08 -10.79 16 13 C 0.20 3.92 6.24 -83.71 -0.52 3.40 16 14 C -0.20 -4.00 8.66 -39.34 -0.34 -4.34 16 15 C -0.06 -1.20 10.03 -39.64 -0.40 -1.60 16 16 C -0.20 -4.41 9.99 -39.36 -0.39 -4.80 16 17 C 0.17 4.16 6.64 -39.13 -0.26 3.90 16 18 O -0.18 -5.07 9.76 0.06 0.00 -5.07 16 19 C -0.39 -10.98 9.44 30.88 0.29 -10.69 16 20 H 0.09 2.26 5.29 -52.48 -0.28 1.99 16 21 C 0.04 1.10 5.49 -17.52 -0.10 1.01 16 22 N -0.86 -25.41 13.67 55.48 0.76 -24.66 16 23 Si 0.94 20.57 29.55 -169.99 -5.02 15.55 16 24 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 25 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 26 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 27 C -0.26 -5.71 9.05 -39.21 -0.35 -6.06 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.09 0.70 7.75 -51.92 -0.40 0.30 16 34 H 0.12 0.48 8.14 -51.92 -0.42 0.06 16 35 H 0.11 0.32 8.14 -51.93 -0.42 -0.11 16 36 H 0.10 0.49 8.14 -51.92 -0.42 0.07 16 37 H 0.08 0.59 8.14 -51.92 -0.42 0.16 16 38 H 0.39 3.43 8.62 -40.82 -0.35 3.08 16 39 H 0.40 5.07 8.84 -40.82 -0.36 4.71 16 40 H 0.12 2.28 6.53 -52.49 -0.34 1.93 16 41 H 0.12 1.85 8.06 -52.49 -0.42 1.42 16 42 H 0.12 2.45 8.06 -52.49 -0.42 2.03 16 43 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 44 H 0.13 2.78 5.71 -52.49 -0.30 2.48 16 LS Contribution 385.11 15.07 5.80 5.80 Total: -1.00 -39.68 385.11 -8.50 -48.18 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -6.21 Total: 9.64 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: -1.44 Total: -13.51 kcal Atomic # 7 Polarization: -44.04 SS G_CDS: 0.42 Total: -43.63 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -0.57 Total: -26.72 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 16 Polarization: 6.17 SS G_CDS: -1.48 Total: 4.68 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -39.68 -8.50 -48.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268858934.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.024 kcal (2) G-P(sol) polarization free energy of solvation -39.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds