Wall clock time and date at job start Wed Apr 1 2020 00:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.46893 * 2 1 4 4 C 1.52998 * 109.47174 * 239.99595 * 2 1 3 5 5 C 1.53003 * 109.47062 * 174.99952 * 4 2 1 6 6 S 1.81393 * 109.46998 * 180.02562 * 5 4 2 7 7 C 1.81405 * 102.99916 * 179.97438 * 6 5 4 8 8 O 1.42100 * 109.47194 * 296.38388 * 6 5 4 9 9 N 1.46500 * 109.47103 * 119.99584 * 2 1 3 10 10 C 1.34779 * 120.00199 * 274.99867 * 9 2 1 11 11 O 1.21591 * 119.99916 * 0.02562 * 10 9 2 12 12 N 1.34777 * 120.00438 * 180.02562 * 10 9 2 13 13 C 1.39943 * 120.00272 * 174.73119 * 12 10 9 14 14 C 1.38956 * 120.03429 * 146.09261 * 13 12 10 15 15 C 1.38159 * 120.06556 * 179.71881 * 14 13 12 16 16 C 1.38165 * 120.13898 * 0.55896 * 15 14 13 17 17 C 1.38907 * 120.06868 * 359.71974 * 16 15 14 18 18 O 1.35757 * 120.03823 * 179.97438 * 17 16 15 19 19 C 1.34828 * 116.99544 * 5.92300 * 18 17 16 20 20 H 1.08003 * 120.00201 * 5.40660 * 19 18 17 21 21 C 1.38650 * 120.00008 * 185.41008 * 19 18 17 22 22 N 1.31563 * 119.99941 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00253 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47316 * 89.99691 * 23 21 19 25 25 H 1.48504 * 109.47226 * 210.00066 * 23 21 19 26 26 H 1.48500 * 109.46942 * 329.99774 * 23 21 19 27 27 C 1.38705 * 120.03276 * 326.36896 * 13 12 10 28 28 H 1.08996 * 109.47471 * 60.00557 * 1 2 3 29 29 H 1.09000 * 109.46825 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47271 * 300.00043 * 1 2 3 31 31 H 1.08994 * 109.47095 * 294.99953 * 4 2 1 32 32 H 1.09004 * 109.46969 * 54.99983 * 4 2 1 33 33 H 1.09006 * 109.46802 * 299.99753 * 5 4 2 34 34 H 1.08994 * 109.47248 * 59.99629 * 5 4 2 35 35 H 1.08995 * 109.46861 * 60.00024 * 7 6 5 36 36 H 1.09006 * 109.47055 * 180.02562 * 7 6 5 37 37 H 1.08995 * 109.47333 * 300.00116 * 7 6 5 38 38 H 0.96995 * 120.00127 * 95.00635 * 9 2 1 39 39 H 0.97001 * 119.99323 * 354.44749 * 12 10 9 40 40 H 1.08003 * 119.96831 * 359.97438 * 14 13 12 41 41 H 1.07999 * 119.93189 * 180.27324 * 15 14 13 42 42 H 1.07996 * 119.96974 * 179.69658 * 16 15 14 43 43 H 0.96999 * 119.99650 * 179.97438 * 22 21 19 44 44 H 1.08000 * 120.07159 * 359.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6133 -1.3136 6 16 4.1694 -1.4679 -2.7950 7 6 5.9655 -1.2328 -2.6973 8 8 3.8668 -2.8530 -2.6995 9 7 2.0183 -0.6905 1.1962 10 6 2.1471 -0.0181 2.3572 11 8 1.8575 1.1615 2.4118 12 7 2.5968 -0.6532 3.4576 13 6 2.8354 0.0676 4.6331 14 6 2.6078 -0.5237 5.8698 15 6 2.8487 0.1853 7.0309 16 6 3.3054 1.4877 6.9663 17 6 3.5293 2.0863 5.7330 18 8 3.9776 3.3662 5.6703 19 6 4.3023 3.9589 6.8370 20 1 4.2842 3.3902 7.7550 21 6 4.6593 5.2984 6.8583 22 7 4.6818 5.9911 5.7400 23 14 5.1085 6.1198 8.4748 24 1 6.5683 5.9831 8.7107 25 1 4.7493 7.5595 8.4152 26 1 4.3649 5.4697 9.5837 27 6 3.2939 1.3749 4.5649 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.7517 -1.7715 -1.2054 32 1 1.6053 -0.2618 -2.1369 33 1 3.8531 0.4370 -1.3574 34 1 3.9995 -1.0727 -0.4259 35 1 6.3404 -1.6768 -1.7752 36 1 6.4419 -1.7129 -3.5521 37 1 6.1934 -0.1669 -2.7061 38 1 2.2491 -1.6316 1.1527 39 1 2.7512 -1.6106 3.4358 40 1 2.2462 -1.5400 5.9235 41 1 2.6752 -0.2779 7.9910 42 1 3.4881 2.0410 7.8755 43 1 4.9312 6.9284 5.7550 44 1 3.4677 1.8380 3.6049 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268858939.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:34 Heat of formation + Delta-G solvation = -98.979881 kcal Electronic energy + Delta-G solvation = -26571.894134 eV Core-core repulsion = 22615.726468 eV Total energy + Delta-G solvation = -3956.167666 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.76288 -40.51448 -38.63649 -37.40491 -36.76951 -35.56274 -34.26834 -33.38090 -31.24106 -30.85371 -29.76354 -29.60021 -27.32687 -25.17153 -24.12400 -23.19043 -22.23143 -21.71376 -19.96789 -19.73916 -18.89919 -18.37022 -17.58385 -16.87283 -16.72890 -16.46146 -16.31058 -16.00692 -15.85657 -15.83304 -15.54729 -15.42919 -15.26081 -14.65154 -14.46927 -14.26683 -14.15842 -13.85261 -13.59199 -13.54158 -13.24597 -13.06328 -12.93216 -12.78307 -12.65975 -12.58185 -12.38401 -12.24487 -12.12788 -11.87771 -11.55715 -11.34171 -11.08134 -11.02415 -10.75771 -10.18362 -9.31698 -9.18047 -8.85494 -8.46360 -6.15906 0.45876 0.66195 0.69928 1.34505 1.44839 1.52502 1.54804 1.76815 2.04499 2.18316 2.83728 2.88371 3.08437 3.18215 3.57221 3.79779 3.90127 4.02020 4.13052 4.25852 4.36183 4.40308 4.41988 4.48753 4.50529 4.68015 4.72186 4.72664 4.81001 4.87713 4.95143 5.08516 5.11742 5.13713 5.18334 5.32927 5.36571 5.46353 5.53072 5.63452 5.73869 5.95027 6.03387 6.20695 6.94724 6.97298 7.47313 7.79767 8.77580 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013350 B = 0.002299 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.925665 B =12175.692289 C =13031.972791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.157 3.843 3 H 0.072 0.928 4 C -0.101 4.101 5 C -0.455 4.455 6 S 1.308 4.692 7 C -0.494 4.494 8 O -0.922 6.922 9 N -0.721 5.721 10 C 0.694 3.306 11 O -0.613 6.613 12 N -0.670 5.670 13 C 0.204 3.796 14 C -0.209 4.209 15 C -0.047 4.047 16 C -0.257 4.257 17 C 0.129 3.871 18 O -0.234 6.234 19 C -0.414 4.414 20 H 0.105 0.895 21 C -0.027 4.027 22 N -0.924 5.924 23 Si 1.023 2.977 24 H -0.262 1.262 25 H -0.272 1.272 26 H -0.250 1.250 27 C -0.211 4.211 28 H 0.091 0.909 29 H 0.069 0.931 30 H 0.029 0.971 31 H 0.073 0.927 32 H 0.129 0.871 33 H 0.136 0.864 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.113 0.887 37 H 0.138 0.862 38 H 0.408 0.592 39 H 0.424 0.576 40 H 0.160 0.840 41 H 0.160 0.840 42 H 0.124 0.876 43 H 0.272 0.728 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.586 -16.923 -16.586 23.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.051 3.949 3 H 0.090 0.910 4 C -0.139 4.139 5 C -0.592 4.592 6 S 1.508 4.492 7 C -0.653 4.653 8 O -0.918 6.918 9 N -0.378 5.378 10 C 0.395 3.605 11 O -0.492 6.492 12 N -0.320 5.320 13 C 0.109 3.891 14 C -0.230 4.230 15 C -0.065 4.065 16 C -0.277 4.277 17 C 0.078 3.922 18 O -0.141 6.141 19 C -0.490 4.490 20 H 0.123 0.877 21 C -0.224 4.224 22 N -0.562 5.562 23 Si 0.842 3.158 24 H -0.186 1.186 25 H -0.197 1.197 26 H -0.174 1.174 27 C -0.233 4.233 28 H 0.110 0.890 29 H 0.088 0.912 30 H 0.048 0.952 31 H 0.092 0.908 32 H 0.147 0.853 33 H 0.155 0.845 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.132 0.868 37 H 0.157 0.843 38 H 0.244 0.756 39 H 0.263 0.737 40 H 0.178 0.822 41 H 0.177 0.823 42 H 0.141 0.859 43 H 0.081 0.919 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.279 -16.051 -17.613 24.211 hybrid contribution 1.465 -0.828 2.545 3.051 sum -2.814 -16.879 -15.067 22.800 Atomic orbital electron populations 1.22183 0.94596 1.02745 1.02470 1.21025 0.94278 0.96801 0.82747 0.91028 1.21537 0.92389 1.01761 0.98242 1.27784 1.03060 1.12328 1.16035 1.69714 0.86815 0.91196 1.01431 1.27685 1.20657 1.10315 1.06617 1.92993 1.80486 1.34738 1.83607 1.45160 1.70779 1.14074 1.07764 1.16237 0.78145 0.84843 0.81324 1.91012 1.57027 1.16461 1.84669 1.42345 1.68853 1.11946 1.08830 1.17074 0.95675 0.90267 0.86133 1.20839 1.10062 1.02678 0.89424 1.21016 0.94344 0.91861 0.99317 1.21314 1.11464 0.98396 0.96514 1.19647 0.92524 0.85421 0.94641 1.83969 1.73313 1.22314 1.34479 1.21893 1.46825 0.94742 0.85515 0.87725 1.26703 0.96526 0.95639 1.03496 1.70225 1.47090 1.09567 1.29300 0.84534 0.79172 0.77247 0.74866 1.18633 1.19666 1.17360 1.20027 1.11210 0.96077 0.96023 0.88983 0.91213 0.95157 0.90849 0.85313 0.84548 0.91357 0.91978 0.86829 0.84346 0.75591 0.73695 0.82203 0.82268 0.85851 0.91860 0.88483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.86 9.48 71.98 0.68 -2.17 16 2 C 0.16 2.95 2.57 44.99 0.12 3.06 16 3 H 0.07 1.72 7.58 -2.38 -0.02 1.71 16 4 C -0.10 -1.11 4.76 30.59 0.15 -0.97 16 5 C -0.45 -5.14 5.81 71.98 0.42 -4.72 16 6 S 1.31 11.97 13.80 -56.49 -0.78 11.19 16 7 C -0.49 -4.55 10.74 113.37 1.22 -3.33 16 8 O -0.92 -21.82 18.14 -148.98 -2.70 -24.53 16 9 N -0.72 -15.52 4.53 -457.80 -2.08 -17.59 16 10 C 0.69 22.33 8.26 179.05 1.48 23.81 16 11 O -0.61 -27.12 13.71 -4.00 -0.05 -27.17 16 12 N -0.67 -19.32 5.35 -317.23 -1.70 -21.01 16 13 C 0.20 7.66 6.27 38.13 0.24 7.90 16 14 C -0.21 -6.54 9.96 22.42 0.22 -6.32 16 15 C -0.05 -1.60 10.03 22.23 0.22 -1.37 16 16 C -0.26 -11.59 9.13 22.41 0.20 -11.38 16 17 C 0.13 6.98 6.64 22.56 0.15 7.13 16 18 O -0.23 -15.14 9.76 -22.80 -0.22 -15.37 16 19 C -0.41 -25.13 9.44 67.92 0.64 -24.49 16 20 H 0.11 5.75 5.29 -2.91 -0.02 5.73 16 21 C -0.03 -1.57 5.49 84.83 0.47 -1.11 16 22 N -0.92 -59.16 13.67 21.61 0.30 -58.87 16 23 Si 1.02 44.04 29.55 68.60 2.03 46.07 16 24 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 25 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 26 H -0.25 -9.90 7.11 99.48 0.71 -9.19 16 27 C -0.21 -10.47 8.60 22.51 0.19 -10.28 16 28 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.13 0.54 8.14 -2.38 -0.02 0.52 16 33 H 0.14 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.07 1.07 7.75 -2.39 -0.02 1.05 16 35 H 0.06 0.85 8.14 -2.39 -0.02 0.84 16 36 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.14 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.41 6.26 8.62 -92.71 -0.80 5.46 16 39 H 0.42 7.98 8.84 -92.71 -0.82 7.16 16 40 H 0.16 3.45 8.06 -2.91 -0.02 3.43 16 41 H 0.16 3.96 8.06 -2.91 -0.02 3.93 16 42 H 0.12 5.56 5.71 -2.91 -0.02 5.54 16 43 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 44 H 0.10 5.37 6.43 -2.91 -0.02 5.35 16 Total: -1.00 -99.59 384.96 0.61 -98.97 By element: Atomic # 1 Polarization: 33.12 SS G_CDS: -0.58 Total: 32.54 kcal Atomic # 6 Polarization: -30.64 SS G_CDS: 6.40 Total: -24.24 kcal Atomic # 7 Polarization: -94.00 SS G_CDS: -3.48 Total: -97.47 kcal Atomic # 8 Polarization: -64.08 SS G_CDS: -2.98 Total: -67.06 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Atomic # 16 Polarization: 11.97 SS G_CDS: -0.78 Total: 11.19 kcal Total: -99.59 0.61 -98.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268858939.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.005 kcal (2) G-P(sol) polarization free energy of solvation -99.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds