Wall clock time and date at job start Tue Mar 31 2020 23:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47605 * 2 1 4 4 N 1.46504 * 109.46915 * 120.00630 * 2 1 3 5 5 S 1.65598 * 120.00205 * 94.99451 * 4 2 1 6 6 O 1.42095 * 106.40393 * 311.45937 * 5 4 2 7 7 O 1.42105 * 106.39972 * 178.53904 * 5 4 2 8 8 C 1.76203 * 107.21628 * 65.00116 * 5 4 2 9 9 C 1.38380 * 119.92464 * 269.97560 * 8 5 4 10 10 C 1.38344 * 120.29017 * 180.02562 * 9 8 5 11 11 C 1.37978 * 120.14704 * 359.69779 * 10 9 8 12 12 C 1.39565 * 119.84870 * 0.57678 * 11 10 9 13 13 C 1.47846 * 120.14297 * 179.72374 * 12 11 10 14 14 O 1.21553 * 120.00032 * 179.72296 * 13 12 11 15 15 N 1.34779 * 120.00003 * 359.72484 * 13 12 11 16 16 C 1.46499 * 119.99872 * 180.02562 * 15 13 12 17 17 C 1.53000 * 109.46840 * 180.02562 * 16 15 13 18 18 C 1.50706 * 109.46735 * 180.02562 * 17 16 15 19 19 H 1.07996 * 119.99928 * 359.97438 * 18 17 16 20 20 C 1.37880 * 119.99611 * 179.97438 * 18 17 16 21 21 N 1.31511 * 120.00327 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99743 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46828 * 90.00241 * 22 20 18 24 24 H 1.48494 * 109.47178 * 209.99936 * 22 20 18 25 25 H 1.48500 * 109.47075 * 330.00183 * 22 20 18 26 26 C 1.37939 * 119.92939 * 89.99976 * 8 5 4 27 27 H 1.09000 * 109.46766 * 59.99496 * 1 2 3 28 28 H 1.08994 * 109.47728 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46638 * 300.00043 * 1 2 3 30 30 H 1.09005 * 109.47084 * 240.00008 * 2 1 3 31 31 H 1.08994 * 109.47234 * 179.97438 * 3 2 1 32 32 H 1.08991 * 109.47282 * 300.00078 * 3 2 1 33 33 H 1.09005 * 109.46893 * 59.99891 * 3 2 1 34 34 H 0.96998 * 119.99451 * 274.99656 * 4 2 1 35 35 H 1.07994 * 119.85736 * 0.02562 * 9 8 5 36 36 H 1.07998 * 119.92489 * 179.97438 * 10 9 8 37 37 H 1.07993 * 120.07732 * 180.27654 * 11 10 9 38 38 H 0.97000 * 119.99708 * 359.97438 * 15 13 12 39 39 H 1.09002 * 109.47391 * 59.99686 * 16 15 13 40 40 H 1.09001 * 109.46813 * 299.99742 * 16 15 13 41 41 H 1.09001 * 109.47194 * 299.99493 * 17 16 15 42 42 H 1.08992 * 109.47399 * 59.99666 * 17 16 15 43 43 H 0.97000 * 120.00354 * 180.02562 * 21 20 18 44 44 H 1.07995 * 120.06939 * 0.02562 * 26 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6908 1.1961 5 16 2.4120 -2.2975 1.1217 6 8 1.3245 -2.9478 0.4786 7 8 2.8775 -2.6569 2.4154 8 6 3.7926 -2.4465 0.0370 9 6 3.5883 -2.6449 -1.3171 10 6 4.6668 -2.7634 -2.1755 11 6 5.9542 -2.6782 -1.6866 12 6 6.1672 -2.4839 -0.3210 13 6 7.5440 -2.3977 0.2108 14 8 7.7265 -2.2235 1.3998 15 7 8.5968 -2.5123 -0.6229 16 6 9.9611 -2.4274 -0.0959 17 6 10.9615 -2.5871 -1.2424 18 6 12.3650 -2.5004 -0.7001 19 1 12.5270 -2.3464 0.3565 20 6 13.4420 -2.6177 -1.5530 21 7 13.2446 -2.8058 -2.8395 22 14 15.1816 -2.5096 -0.8809 23 1 15.6509 -3.8665 -0.5017 24 1 16.0801 -1.9479 -1.9212 25 1 15.1966 -1.6285 0.3144 26 6 5.0746 -2.3656 0.5397 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3632 0.5139 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 3.1301 1.4424 0.0005 32 1 1.6769 1.9563 -0.8899 33 1 1.6768 1.9563 0.8900 34 1 2.1109 -0.2069 2.0317 35 1 2.5826 -2.7075 -1.7057 36 1 4.5006 -2.9186 -3.2313 37 1 6.7952 -2.7664 -2.3583 38 1 8.4512 -2.6517 -1.5717 39 1 10.1177 -3.2194 0.6365 40 1 10.1068 -1.4580 0.3807 41 1 10.8160 -3.5564 -1.7193 42 1 10.8048 -1.7949 -1.9743 43 1 14.0023 -2.8887 -3.4394 44 1 5.2326 -2.2116 1.5969 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273000887.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:50:41 Heat of formation + Delta-G solvation = -101.098037 kcal Electronic energy + Delta-G solvation = -26667.799175 eV Core-core repulsion = 22711.539659 eV Total energy + Delta-G solvation = -3956.259517 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.22244 -38.38699 -37.70733 -37.09694 -36.14199 -35.05482 -33.05820 -31.87602 -31.48003 -30.99755 -29.51391 -27.61257 -25.33946 -23.94071 -23.31019 -21.94166 -21.17519 -20.76418 -19.81291 -18.59622 -17.87293 -16.77290 -16.57210 -16.39256 -16.22318 -15.84669 -15.17023 -15.09247 -14.74748 -14.57611 -14.52836 -14.25777 -13.90280 -13.55476 -13.49180 -13.29255 -12.82519 -12.67554 -12.64060 -12.39432 -12.34854 -12.33172 -11.99290 -11.96000 -11.88946 -11.40055 -11.28541 -11.15105 -11.08962 -10.69500 -10.42538 -10.08590 -9.97386 -9.79603 -9.59147 -9.38090 -9.30798 -8.65142 -8.43946 -6.14981 -4.17986 0.02216 0.35036 0.72978 2.49841 2.78178 3.26200 3.32014 3.34613 3.37704 3.43687 3.62039 4.02987 4.25488 4.36671 4.43774 4.47688 4.58384 4.65564 4.67086 4.82297 4.89413 5.05717 5.17228 5.22358 5.23131 5.34697 5.38581 5.47652 5.61837 5.63254 5.78535 5.83554 5.85719 5.86853 6.22068 6.25381 6.37728 6.54476 6.63506 6.74626 7.42930 7.52779 7.81107 7.83786 8.19997 8.44177 8.87707 9.47232 10.96593 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.023640 B = 0.002050 C = 0.002034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.163624 B =13653.269349 C =13762.893898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.146 3.854 3 C -0.161 4.161 4 N -1.112 6.112 5 S 2.696 3.304 6 O -0.954 6.954 7 O -0.954 6.954 8 C -0.688 4.688 9 C -0.008 4.008 10 C -0.143 4.143 11 C -0.032 4.032 12 C -0.144 4.144 13 C 0.546 3.454 14 O -0.540 6.540 15 N -0.714 5.714 16 C 0.120 3.880 17 C 0.012 3.988 18 C -0.522 4.522 19 H 0.060 0.940 20 C 0.059 3.941 21 N -0.894 5.894 22 Si 0.898 3.102 23 H -0.279 1.279 24 H -0.286 1.286 25 H -0.272 1.272 26 C 0.037 3.963 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.061 0.939 30 H 0.083 0.917 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.420 0.580 35 H 0.143 0.857 36 H 0.141 0.859 37 H 0.139 0.861 38 H 0.396 0.604 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.023 0.977 42 H 0.023 0.977 43 H 0.262 0.738 44 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.439 6.089 0.078 28.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.039 3.961 3 C -0.220 4.220 4 N -0.873 5.873 5 S 2.785 3.215 6 O -0.944 6.944 7 O -0.944 6.944 8 C -0.774 4.774 9 C -0.027 4.027 10 C -0.162 4.162 11 C -0.051 4.051 12 C -0.148 4.148 13 C 0.332 3.668 14 O -0.419 6.419 15 N -0.364 5.364 16 C -0.002 4.002 17 C -0.025 4.025 18 C -0.561 4.561 19 H 0.078 0.922 20 C -0.143 4.143 21 N -0.533 5.533 22 Si 0.725 3.275 23 H -0.205 1.205 24 H -0.212 1.212 25 H -0.197 1.197 26 C 0.017 3.983 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.080 0.920 30 H 0.101 0.899 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.255 0.745 35 H 0.161 0.839 36 H 0.158 0.842 37 H 0.157 0.843 38 H 0.231 0.769 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.041 0.959 42 H 0.041 0.959 43 H 0.072 0.928 44 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -27.590 5.421 1.018 28.136 hybrid contribution 1.667 0.387 -0.493 1.781 sum -25.923 5.808 0.524 26.571 Atomic orbital electron populations 1.22352 0.94699 1.03631 1.02593 1.20778 0.94702 0.94388 0.86248 1.22117 1.02117 0.94777 1.02995 1.55694 1.81650 1.30823 1.19114 1.01893 0.73692 0.72429 0.73482 1.93589 1.50856 1.72605 1.77332 1.93630 1.81984 1.81172 1.37578 1.30929 1.16167 1.19709 1.10629 1.21109 1.00299 0.90240 0.91054 1.21267 0.92069 1.02187 1.00694 1.21790 0.98146 0.90729 0.94387 1.20302 0.94400 1.05845 0.94238 1.18156 0.84345 0.77814 0.86493 1.90777 1.86075 1.49604 1.15405 1.46285 1.07293 1.71772 1.11056 1.21817 0.78143 1.01108 0.99088 1.19335 0.92828 0.97779 0.92570 1.21033 0.90278 1.50307 0.94483 0.92171 1.24999 0.99564 0.94911 0.94819 1.69945 1.31277 1.49301 1.02764 0.86493 0.83835 0.78406 0.78716 1.20521 1.21151 1.19702 1.21024 0.89466 0.87092 1.00753 0.91350 0.90978 0.91953 0.89862 0.91641 0.91019 0.91744 0.74523 0.83883 0.84157 0.84293 0.76876 0.92168 0.92191 0.95892 0.95901 0.92798 0.82907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.91 9.52 37.16 0.35 -0.56 16 2 C 0.15 0.81 3.38 -67.93 -0.23 0.58 16 3 C -0.16 -0.73 9.44 37.16 0.35 -0.38 16 4 N -1.11 -7.46 5.47 -4.89 -0.03 -7.48 16 5 S 2.70 26.74 5.65 -107.50 -0.61 26.13 16 6 O -0.95 -10.96 16.53 -57.17 -0.95 -11.90 16 7 O -0.95 -12.70 17.27 -57.17 -0.99 -13.69 16 8 C -0.69 -7.14 5.81 -39.64 -0.23 -7.37 16 9 C -0.01 -0.07 8.89 -39.49 -0.35 -0.42 16 10 C -0.14 -1.19 10.03 -39.64 -0.40 -1.59 16 11 C -0.03 -0.32 9.54 -39.18 -0.37 -0.70 16 12 C -0.14 -1.93 5.87 -104.97 -0.62 -2.55 16 13 C 0.55 9.35 7.77 -12.33 -0.10 9.25 16 14 O -0.54 -11.15 16.35 5.32 0.09 -11.07 16 15 N -0.71 -12.12 5.51 -61.25 -0.34 -12.46 16 16 C 0.12 2.49 5.61 -4.04 -0.02 2.47 16 17 C 0.01 0.30 5.09 -27.88 -0.14 0.15 16 18 C -0.52 -14.23 9.11 -34.44 -0.31 -14.54 16 19 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 21 N -0.89 -25.65 13.29 55.43 0.74 -24.91 16 22 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 26 C 0.04 0.47 9.07 -39.19 -0.36 0.12 16 27 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.07 0.48 7.64 -51.93 -0.40 0.09 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.08 0.40 7.23 -51.93 -0.38 0.03 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.42 2.14 8.84 -34.47 -0.30 1.83 16 35 H 0.14 0.89 7.60 -52.49 -0.40 0.50 16 36 H 0.14 0.75 8.06 -52.49 -0.42 0.32 16 37 H 0.14 1.17 6.40 -52.49 -0.34 0.84 16 38 H 0.40 5.62 6.51 -40.82 -0.27 5.36 16 39 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 41 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 44 H 0.15 2.06 7.20 -52.49 -0.38 1.68 16 LS Contribution 384.34 15.07 5.79 5.79 Total: -1.00 -35.73 384.34 -10.06 -45.79 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -6.22 Total: 1.70 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: -2.52 Total: -14.00 kcal Atomic # 7 Polarization: -45.23 SS G_CDS: 0.37 Total: -44.85 kcal Atomic # 8 Polarization: -34.81 SS G_CDS: -1.85 Total: -36.66 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: 26.74 SS G_CDS: -0.61 Total: 26.13 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.73 -10.06 -45.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273000887.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.307 kcal (2) G-P(sol) polarization free energy of solvation -35.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds