Wall clock time and date at job start Tue Mar 31 2020 23:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47605 * 2 1 4 4 N 1.46504 * 109.46915 * 120.00630 * 2 1 3 5 5 S 1.65598 * 120.00205 * 94.99451 * 4 2 1 6 6 O 1.42095 * 106.40393 * 311.45937 * 5 4 2 7 7 O 1.42105 * 106.39972 * 178.53904 * 5 4 2 8 8 C 1.76203 * 107.21628 * 65.00116 * 5 4 2 9 9 C 1.38380 * 119.92464 * 269.97560 * 8 5 4 10 10 C 1.38344 * 120.29017 * 180.02562 * 9 8 5 11 11 C 1.37978 * 120.14704 * 359.69779 * 10 9 8 12 12 C 1.39565 * 119.84870 * 0.57678 * 11 10 9 13 13 C 1.47846 * 120.14297 * 179.72374 * 12 11 10 14 14 O 1.21553 * 120.00032 * 179.72296 * 13 12 11 15 15 N 1.34779 * 120.00003 * 359.72484 * 13 12 11 16 16 C 1.46499 * 119.99872 * 180.02562 * 15 13 12 17 17 C 1.53000 * 109.46840 * 180.02562 * 16 15 13 18 18 C 1.50706 * 109.46735 * 180.02562 * 17 16 15 19 19 H 1.07996 * 119.99928 * 359.97438 * 18 17 16 20 20 C 1.37880 * 119.99611 * 179.97438 * 18 17 16 21 21 N 1.31511 * 120.00327 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99743 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46828 * 90.00241 * 22 20 18 24 24 H 1.48494 * 109.47178 * 209.99936 * 22 20 18 25 25 H 1.48500 * 109.47075 * 330.00183 * 22 20 18 26 26 C 1.37939 * 119.92939 * 89.99976 * 8 5 4 27 27 H 1.09000 * 109.46766 * 59.99496 * 1 2 3 28 28 H 1.08994 * 109.47728 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46638 * 300.00043 * 1 2 3 30 30 H 1.09005 * 109.47084 * 240.00008 * 2 1 3 31 31 H 1.08994 * 109.47234 * 179.97438 * 3 2 1 32 32 H 1.08991 * 109.47282 * 300.00078 * 3 2 1 33 33 H 1.09005 * 109.46893 * 59.99891 * 3 2 1 34 34 H 0.96998 * 119.99451 * 274.99656 * 4 2 1 35 35 H 1.07994 * 119.85736 * 0.02562 * 9 8 5 36 36 H 1.07998 * 119.92489 * 179.97438 * 10 9 8 37 37 H 1.07993 * 120.07732 * 180.27654 * 11 10 9 38 38 H 0.97000 * 119.99708 * 359.97438 * 15 13 12 39 39 H 1.09002 * 109.47391 * 59.99686 * 16 15 13 40 40 H 1.09001 * 109.46813 * 299.99742 * 16 15 13 41 41 H 1.09001 * 109.47194 * 299.99493 * 17 16 15 42 42 H 1.08992 * 109.47399 * 59.99666 * 17 16 15 43 43 H 0.97000 * 120.00354 * 180.02562 * 21 20 18 44 44 H 1.07995 * 120.06939 * 0.02562 * 26 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6908 1.1961 5 16 2.4120 -2.2975 1.1217 6 8 1.3245 -2.9478 0.4786 7 8 2.8775 -2.6569 2.4154 8 6 3.7926 -2.4465 0.0370 9 6 3.5883 -2.6449 -1.3171 10 6 4.6668 -2.7634 -2.1755 11 6 5.9542 -2.6782 -1.6866 12 6 6.1672 -2.4839 -0.3210 13 6 7.5440 -2.3977 0.2108 14 8 7.7265 -2.2235 1.3998 15 7 8.5968 -2.5123 -0.6229 16 6 9.9611 -2.4274 -0.0959 17 6 10.9615 -2.5871 -1.2424 18 6 12.3650 -2.5004 -0.7001 19 1 12.5270 -2.3464 0.3565 20 6 13.4420 -2.6177 -1.5530 21 7 13.2446 -2.8058 -2.8395 22 14 15.1816 -2.5096 -0.8809 23 1 15.6509 -3.8665 -0.5017 24 1 16.0801 -1.9479 -1.9212 25 1 15.1966 -1.6285 0.3144 26 6 5.0746 -2.3656 0.5397 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3632 0.5139 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 3.1301 1.4424 0.0005 32 1 1.6769 1.9563 -0.8899 33 1 1.6768 1.9563 0.8900 34 1 2.1109 -0.2069 2.0317 35 1 2.5826 -2.7075 -1.7057 36 1 4.5006 -2.9186 -3.2313 37 1 6.7952 -2.7664 -2.3583 38 1 8.4512 -2.6517 -1.5717 39 1 10.1177 -3.2194 0.6365 40 1 10.1068 -1.4580 0.3807 41 1 10.8160 -3.5564 -1.7193 42 1 10.8048 -1.7949 -1.9743 43 1 14.0023 -2.8887 -3.4394 44 1 5.2326 -2.2116 1.5969 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273000887.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:50:40 Heat of formation + Delta-G solvation = -127.933597 kcal Electronic energy + Delta-G solvation = -26668.962853 eV Core-core repulsion = 22711.539659 eV Total energy + Delta-G solvation = -3957.423194 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.36872 -39.50490 -38.51934 -37.66932 -37.03719 -36.72622 -34.94113 -33.01673 -32.32459 -31.50706 -31.21356 -27.97572 -27.07627 -25.05670 -24.32685 -22.88329 -22.39658 -21.95343 -20.68346 -19.61263 -18.66223 -18.55950 -17.52127 -17.37202 -17.16900 -16.93765 -16.59417 -16.45886 -16.13014 -15.52681 -15.24406 -15.10387 -15.04738 -14.85968 -14.36178 -14.30874 -13.95157 -13.85686 -13.48821 -13.31012 -13.25302 -13.19675 -12.99625 -12.96620 -12.86645 -12.56020 -12.51620 -12.33584 -12.28696 -11.98818 -11.79484 -11.73136 -11.49816 -11.07814 -10.69497 -10.62325 -10.54683 -10.31556 -10.04536 -8.25911 -6.35917 -0.75635 -0.50213 -0.15715 1.41253 1.41444 1.52777 1.56155 1.94943 2.07600 2.41601 2.46572 2.70145 3.09122 3.20701 3.52770 3.68129 3.82751 3.85599 3.96342 4.15427 4.21412 4.29987 4.31714 4.44376 4.46689 4.50577 4.68303 4.80560 4.84616 4.85473 4.96016 5.01469 5.02835 5.07681 5.17718 5.27707 5.40372 5.43514 5.46681 5.54995 5.59786 5.75794 6.05507 6.13547 6.46336 6.76557 7.08276 7.33301 8.85770 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.023640 B = 0.002050 C = 0.002034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.163624 B =13653.269349 C =13762.893898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.137 3.863 3 C -0.160 4.160 4 N -1.103 6.103 5 S 2.713 3.287 6 O -0.968 6.968 7 O -0.994 6.994 8 C -0.688 4.688 9 C 0.001 3.999 10 C -0.130 4.130 11 C -0.029 4.029 12 C -0.166 4.166 13 C 0.546 3.454 14 O -0.584 6.584 15 N -0.707 5.707 16 C 0.138 3.862 17 C 0.023 3.977 18 C -0.548 4.548 19 H 0.058 0.942 20 C 0.008 3.992 21 N -0.924 5.924 22 Si 0.964 3.036 23 H -0.273 1.273 24 H -0.279 1.279 25 H -0.267 1.267 26 C 0.021 3.979 27 H 0.086 0.914 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.094 0.906 31 H 0.056 0.944 32 H 0.086 0.914 33 H 0.068 0.932 34 H 0.427 0.573 35 H 0.175 0.825 36 H 0.182 0.818 37 H 0.157 0.843 38 H 0.411 0.589 39 H 0.048 0.952 40 H 0.050 0.950 41 H 0.011 0.989 42 H 0.013 0.987 43 H 0.266 0.734 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.730 6.619 -1.750 29.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.031 3.969 3 C -0.218 4.218 4 N -0.866 5.866 5 S 2.803 3.197 6 O -0.958 6.958 7 O -0.984 6.984 8 C -0.775 4.775 9 C -0.018 4.018 10 C -0.148 4.148 11 C -0.047 4.047 12 C -0.170 4.170 13 C 0.335 3.665 14 O -0.466 6.466 15 N -0.358 5.358 16 C 0.015 3.985 17 C -0.014 4.014 18 C -0.586 4.586 19 H 0.076 0.924 20 C -0.191 4.191 21 N -0.564 5.564 22 Si 0.788 3.212 23 H -0.199 1.199 24 H -0.204 1.204 25 H -0.192 1.192 26 C 0.000 4.000 27 H 0.104 0.896 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.112 0.888 31 H 0.075 0.925 32 H 0.105 0.895 33 H 0.087 0.913 34 H 0.264 0.736 35 H 0.192 0.808 36 H 0.200 0.800 37 H 0.175 0.825 38 H 0.249 0.751 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.029 0.971 42 H 0.031 0.969 43 H 0.075 0.925 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -28.905 5.950 -0.827 29.522 hybrid contribution 1.944 0.254 0.012 1.961 sum -26.961 6.203 -0.815 27.677 Atomic orbital electron populations 1.22365 0.94307 1.02951 1.03722 1.21047 0.95061 0.94968 0.85849 1.22117 1.01557 0.94158 1.04014 1.55478 1.81221 1.29721 1.20197 1.01186 0.73137 0.72963 0.72416 1.93567 1.51158 1.73643 1.77383 1.93576 1.82556 1.82443 1.39818 1.30925 1.14895 1.19871 1.11784 1.21605 1.02138 0.87944 0.90082 1.21723 0.90618 0.99917 1.02591 1.22040 1.00042 0.89754 0.92914 1.19996 0.91870 1.09182 0.95936 1.18720 0.85688 0.76296 0.85815 1.90744 1.86918 1.51589 1.17356 1.46031 1.05926 1.71941 1.11938 1.21321 0.79563 1.00096 0.97507 1.19138 0.92677 0.96548 0.93049 1.21449 0.92043 1.50462 0.94646 0.92399 1.25838 1.03678 0.94438 0.95104 1.70038 1.32590 1.49920 1.03823 0.85465 0.78852 0.78619 0.78237 1.19870 1.20429 1.19182 1.20907 0.90545 0.88476 1.00027 0.89550 0.92491 0.91623 0.88798 0.92486 0.89505 0.91289 0.73609 0.80800 0.80030 0.82523 0.75112 0.93370 0.93159 0.97078 0.96900 0.92490 0.84884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.47 9.52 71.98 0.69 -0.79 16 2 C 0.14 1.23 3.38 44.99 0.15 1.38 16 3 C -0.16 -1.11 9.44 71.98 0.68 -0.43 16 4 N -1.10 -13.79 5.47 -169.38 -0.93 -14.72 16 5 S 2.71 52.58 5.65 -56.49 -0.32 52.26 16 6 O -0.97 -20.99 16.53 -128.00 -2.12 -23.11 16 7 O -0.99 -27.43 17.27 -128.00 -2.21 -29.64 16 8 C -0.69 -13.51 5.81 22.23 0.13 -13.38 16 9 C 0.00 0.02 8.89 22.33 0.20 0.22 16 10 C -0.13 -1.63 10.03 22.23 0.22 -1.41 16 11 C -0.03 -0.52 9.54 22.53 0.21 -0.31 16 12 C -0.17 -4.42 5.87 -20.09 -0.12 -4.53 16 13 C 0.55 19.20 7.77 86.79 0.67 19.87 16 14 O -0.58 -25.35 16.35 -3.88 -0.06 -25.41 16 15 N -0.71 -24.29 5.51 -465.97 -2.57 -26.86 16 16 C 0.14 5.90 5.61 86.38 0.48 6.38 16 17 C 0.02 1.15 5.09 29.85 0.15 1.30 16 18 C -0.55 -30.18 9.11 25.60 0.23 -29.95 16 19 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 20 C 0.01 0.47 5.46 84.66 0.46 0.93 16 21 N -0.92 -53.09 13.29 21.45 0.28 -52.81 16 22 Si 0.96 43.16 29.54 68.60 2.03 45.19 16 23 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 24 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 25 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 26 C 0.02 0.54 9.07 22.53 0.20 0.75 16 27 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.06 0.67 7.64 -2.39 -0.02 0.65 16 29 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.09 0.63 7.23 -2.38 -0.02 0.62 16 31 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.07 0.42 8.14 -2.38 -0.02 0.40 16 34 H 0.43 4.16 8.84 -96.75 -0.85 3.31 16 35 H 0.17 1.38 7.60 -2.91 -0.02 1.36 16 36 H 0.18 0.85 8.06 -2.91 -0.02 0.83 16 37 H 0.16 2.21 6.40 -2.91 -0.02 2.20 16 38 H 0.41 11.45 6.51 -92.71 -0.60 10.85 16 39 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 41 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 44 H 0.13 3.90 7.20 -2.91 -0.02 3.88 16 Total: -1.00 -78.65 384.34 -1.94 -80.59 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -0.43 Total: 14.45 kcal Atomic # 6 Polarization: -24.33 SS G_CDS: 4.38 Total: -19.96 kcal Atomic # 7 Polarization: -91.18 SS G_CDS: -3.21 Total: -94.38 kcal Atomic # 8 Polarization: -73.77 SS G_CDS: -4.39 Total: -78.16 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Atomic # 16 Polarization: 52.58 SS G_CDS: -0.32 Total: 52.26 kcal Total: -78.65 -1.94 -80.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273000887.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.340 kcal (2) G-P(sol) polarization free energy of solvation -78.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds