Wall clock time and date at job start Tue Mar 31 2020 23:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47150 * 2 1 4 4 N 1.46497 * 109.47100 * 119.99474 * 2 1 3 5 5 S 1.65598 * 120.00058 * 144.99903 * 4 2 1 6 6 O 1.42101 * 106.40238 * 311.46388 * 5 4 2 7 7 O 1.42099 * 106.40264 * 178.54323 * 5 4 2 8 8 C 1.76206 * 107.21555 * 65.00397 * 5 4 2 9 9 C 1.38361 * 119.85107 * 270.24982 * 8 5 4 10 10 C 1.37955 * 120.14138 * 180.25791 * 9 8 5 11 11 C 1.39575 * 119.85263 * 359.49245 * 10 9 8 12 12 C 1.47848 * 120.14487 * 180.27853 * 11 10 9 13 13 O 1.21550 * 119.99883 * 359.97438 * 12 11 10 14 14 N 1.34779 * 120.00150 * 180.02562 * 12 11 10 15 15 C 1.46501 * 120.00008 * 179.97438 * 14 12 11 16 16 C 1.52996 * 109.47072 * 179.97438 * 15 14 12 17 17 C 1.50695 * 109.47227 * 180.02562 * 16 15 14 18 18 H 1.07998 * 120.00152 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00453 * 179.97438 * 17 16 15 20 20 N 1.31509 * 120.00367 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 119.99758 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47407 * 89.99609 * 21 19 17 23 23 H 1.48493 * 109.47407 * 210.00032 * 21 19 17 24 24 H 1.48507 * 109.47160 * 330.00088 * 21 19 17 25 25 C 1.39579 * 119.71401 * 0.25207 * 11 10 9 26 26 C 1.37958 * 119.84937 * 0.02562 * 25 11 10 27 27 H 1.09002 * 109.47390 * 300.00354 * 1 2 3 28 28 H 1.09002 * 109.47077 * 60.00975 * 1 2 3 29 29 H 1.09008 * 109.47008 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47390 * 239.99646 * 2 1 3 31 31 H 1.08994 * 109.47476 * 180.02562 * 3 2 1 32 32 H 1.09008 * 109.46514 * 299.99889 * 3 2 1 33 33 H 1.08994 * 109.47549 * 59.99385 * 3 2 1 34 34 H 0.97001 * 120.00080 * 325.00982 * 4 2 1 35 35 H 1.07998 * 119.92846 * 0.02562 * 9 8 5 36 36 H 1.08002 * 120.07573 * 179.77464 * 10 9 8 37 37 H 0.96996 * 119.99601 * 359.97438 * 14 12 11 38 38 H 1.08997 * 109.47252 * 300.00049 * 15 14 12 39 39 H 1.09007 * 109.46893 * 60.00137 * 15 14 12 40 40 H 1.09005 * 109.46987 * 299.99854 * 16 15 14 41 41 H 1.08998 * 109.47290 * 60.00029 * 16 15 14 42 42 H 0.97006 * 119.99882 * 180.02562 * 20 19 17 43 43 H 1.07997 * 120.07575 * 180.02562 * 25 11 10 44 44 H 1.08006 * 119.92205 * 179.97438 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 16 3.4019 -1.5974 1.1219 6 8 3.2727 -2.4337 -0.0196 7 8 3.6230 -2.1000 2.4325 8 6 4.7319 -0.4928 0.7817 9 6 5.0802 -0.2173 -0.5287 10 6 6.1239 0.6425 -0.8020 11 6 6.8221 1.2430 0.2468 12 6 7.9377 2.1702 -0.0387 13 8 8.2489 2.4107 -1.1888 14 7 8.6103 2.7481 0.9763 15 6 9.7161 3.6665 0.6934 16 6 10.3032 4.1787 2.0101 17 6 11.4403 5.1239 1.7190 18 1 11.7164 5.3381 0.6972 19 6 12.1277 5.7160 2.7573 20 7 13.1197 6.5411 2.5033 21 14 11.6498 5.3460 4.5249 22 1 12.4211 4.1739 5.0113 23 1 11.9511 6.5247 5.3762 24 1 10.1971 5.0451 4.5923 25 6 6.4622 0.9648 1.5664 26 6 5.4202 0.0987 1.8260 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 3.1299 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8901 33 1 1.6766 1.9564 0.8899 34 1 1.5311 -0.6166 2.0317 35 1 4.5362 -0.6791 -1.3394 36 1 6.3972 0.8540 -1.8252 37 1 8.3622 2.5559 1.8941 38 1 10.4885 3.1426 0.1302 39 1 9.3479 4.5090 0.1079 40 1 9.5307 4.7028 2.5728 41 1 10.6713 3.3365 2.5959 42 1 13.6034 6.9574 3.2339 43 1 6.9982 1.4266 2.3824 44 1 5.1410 -0.1177 2.8466 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273025339.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:50:44 Heat of formation + Delta-G solvation = -96.096995 kcal Electronic energy + Delta-G solvation = -26725.434770 eV Core-core repulsion = 22769.392115 eV Total energy + Delta-G solvation = -3956.042655 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.33729 -38.51282 -37.79622 -37.19666 -36.25525 -35.23701 -33.04481 -32.00100 -31.47780 -31.07004 -30.02747 -27.69066 -25.69967 -24.00239 -23.09619 -22.00507 -20.96268 -20.70318 -20.02169 -18.70084 -18.04479 -17.39424 -17.01809 -16.65552 -15.98051 -15.43109 -15.25547 -15.18682 -14.86296 -14.68980 -14.22918 -14.19594 -14.02993 -13.85838 -13.76234 -13.38334 -13.11221 -12.90919 -12.73185 -12.66901 -12.50642 -12.43524 -12.06647 -11.95157 -11.70489 -11.54965 -11.52028 -11.32098 -11.30221 -10.50284 -10.43990 -10.15210 -10.04648 -9.77982 -9.73923 -9.47630 -9.40340 -8.77555 -8.65877 -6.17088 -4.17940 -0.13534 0.15269 0.88953 2.36763 2.68956 3.20370 3.25692 3.27622 3.28986 3.29597 3.52404 3.88756 4.22695 4.31747 4.32992 4.42696 4.50703 4.57689 4.63359 4.84875 4.85773 5.01207 5.11397 5.15503 5.17424 5.25773 5.30511 5.47568 5.55990 5.61255 5.64682 5.71715 5.76017 5.85878 6.01184 6.07818 6.33213 6.43804 6.45600 6.52452 7.00763 7.12297 7.57798 7.65012 8.25378 8.37846 8.86684 9.42464 10.95771 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.019143 B = 0.002205 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.313531 B =12696.900708 C =13016.786222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.139 3.861 3 C -0.179 4.179 4 N -1.112 6.112 5 S 2.696 3.304 6 O -0.954 6.954 7 O -0.957 6.957 8 C -0.664 4.664 9 C -0.029 4.029 10 C -0.084 4.084 11 C -0.067 4.067 12 C 0.542 3.458 13 O -0.533 6.533 14 N -0.715 5.715 15 C 0.128 3.872 16 C -0.022 4.022 17 C -0.525 4.525 18 H 0.076 0.924 19 C 0.070 3.930 20 N -0.896 5.896 21 Si 0.882 3.118 22 H -0.276 1.276 23 H -0.286 1.286 24 H -0.267 1.267 25 C -0.110 4.110 26 C -0.024 4.024 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.094 0.906 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.419 0.581 35 H 0.146 0.854 36 H 0.147 0.853 37 H 0.397 0.603 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.022 0.978 41 H 0.018 0.982 42 H 0.265 0.735 43 H 0.139 0.861 44 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.671 -14.932 -2.090 31.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.033 3.967 3 C -0.238 4.238 4 N -0.872 5.872 5 S 2.785 3.215 6 O -0.944 6.944 7 O -0.947 6.947 8 C -0.751 4.751 9 C -0.048 4.048 10 C -0.104 4.104 11 C -0.070 4.070 12 C 0.327 3.673 13 O -0.411 6.411 14 N -0.365 5.365 15 C 0.006 3.994 16 C -0.060 4.060 17 C -0.563 4.563 18 H 0.094 0.906 19 C -0.133 4.133 20 N -0.534 5.534 21 Si 0.710 3.290 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.191 1.191 25 C -0.130 4.130 26 C -0.043 4.043 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.112 0.888 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.254 0.746 35 H 0.163 0.837 36 H 0.165 0.835 37 H 0.231 0.769 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.041 0.959 41 H 0.037 0.963 42 H 0.075 0.925 43 H 0.157 0.843 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -27.100 -15.511 -2.897 31.359 hybrid contribution 0.062 0.663 1.735 1.858 sum -27.038 -14.848 -1.162 30.869 Atomic orbital electron populations 1.22053 0.93569 1.02914 1.02991 1.20876 0.96081 0.93012 0.86749 1.22428 1.02258 0.95951 1.03183 1.55649 1.42620 1.69553 1.19372 1.01863 0.72737 0.73301 0.73612 1.93601 1.85748 1.62823 1.52251 1.93608 1.85144 1.77401 1.38538 1.31047 1.22136 1.21212 1.00658 1.20901 0.95340 0.93912 0.94651 1.21430 0.94004 0.94841 1.00090 1.20552 0.95711 0.96467 0.94282 1.18245 0.82396 0.80938 0.85734 1.90788 1.67383 1.62467 1.20472 1.46318 1.34971 1.46442 1.08794 1.21621 0.86371 0.91170 1.00190 1.19806 0.97011 0.96727 0.92468 1.20881 1.14242 1.25624 0.95565 0.90562 1.25003 0.94546 0.94507 0.99212 1.69898 1.21262 1.29793 1.32486 0.86750 0.79359 0.78096 0.84837 1.20176 1.21205 1.19127 1.21524 0.97357 0.98014 0.96067 1.20838 0.92943 0.92044 0.98478 0.91848 0.90928 0.91691 0.88839 0.91844 0.90990 0.91654 0.74622 0.83679 0.83483 0.76858 0.91516 0.91507 0.95936 0.96343 0.92471 0.84320 0.83638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.55 9.44 37.16 0.35 -0.20 16 2 C 0.14 0.67 3.52 -67.93 -0.24 0.44 16 3 C -0.18 -0.88 9.52 37.16 0.35 -0.53 16 4 N -1.11 -5.99 5.47 -4.89 -0.03 -6.01 16 5 S 2.70 22.93 5.71 -107.50 -0.61 22.31 16 6 O -0.95 -10.53 16.61 -57.17 -0.95 -11.48 16 7 O -0.96 -10.60 17.27 -57.17 -0.99 -11.59 16 8 C -0.66 -5.90 5.08 -39.49 -0.20 -6.10 16 9 C -0.03 -0.26 8.54 -39.64 -0.34 -0.60 16 10 C -0.08 -0.91 9.60 -39.19 -0.38 -1.29 16 11 C -0.07 -0.81 5.87 -104.97 -0.62 -1.43 16 12 C 0.54 8.51 7.77 -12.33 -0.10 8.42 16 13 O -0.53 -10.23 16.35 5.32 0.09 -10.14 16 14 N -0.72 -11.17 5.51 -61.25 -0.34 -11.51 16 15 C 0.13 2.50 5.61 -4.04 -0.02 2.48 16 16 C -0.02 -0.49 4.15 -27.89 -0.12 -0.61 16 17 C -0.52 -14.35 9.66 -34.44 -0.33 -14.68 16 18 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 19 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 20 N -0.90 -26.85 13.96 55.43 0.77 -26.07 16 21 Si 0.88 20.58 27.47 -169.99 -4.67 15.91 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.27 -5.82 6.54 56.52 0.37 -5.45 16 25 C -0.11 -1.09 9.54 -39.18 -0.37 -1.46 16 26 C -0.02 -0.21 9.50 -39.64 -0.38 -0.59 16 27 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 28 H 0.07 0.20 8.14 -51.93 -0.42 -0.23 16 29 H 0.06 0.24 8.14 -51.92 -0.42 -0.18 16 30 H 0.09 0.46 7.50 -51.93 -0.39 0.07 16 31 H 0.06 0.38 6.15 -51.93 -0.32 0.06 16 32 H 0.07 0.30 8.14 -51.92 -0.42 -0.13 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.42 1.46 8.84 -34.47 -0.30 1.15 16 35 H 0.15 1.01 7.61 -52.49 -0.40 0.61 16 36 H 0.15 1.56 7.65 -52.49 -0.40 1.16 16 37 H 0.40 5.04 6.51 -40.82 -0.27 4.78 16 38 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 39 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 40 H 0.02 0.48 7.20 -51.93 -0.37 0.11 16 41 H 0.02 0.39 7.57 -51.93 -0.39 0.00 16 42 H 0.27 7.41 8.31 -40.82 -0.34 7.08 16 43 H 0.14 1.11 6.41 -52.49 -0.34 0.77 16 44 H 0.15 1.02 7.60 -52.48 -0.40 0.62 16 LS Contribution 378.70 15.07 5.71 5.71 Total: -1.00 -35.96 378.70 -9.63 -45.59 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -6.13 Total: 1.59 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: -2.48 Total: -14.30 kcal Atomic # 7 Polarization: -44.01 SS G_CDS: 0.41 Total: -43.60 kcal Atomic # 8 Polarization: -31.36 SS G_CDS: -1.85 Total: -33.21 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -4.67 Total: 15.91 kcal Atomic # 16 Polarization: 22.93 SS G_CDS: -0.61 Total: 22.31 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.96 -9.63 -45.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273025339.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.508 kcal (2) G-P(sol) polarization free energy of solvation -35.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds