Wall clock time and date at job start Tue Mar 31 2020 23:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47150 * 2 1 4 4 N 1.46497 * 109.47100 * 119.99474 * 2 1 3 5 5 S 1.65598 * 120.00058 * 144.99903 * 4 2 1 6 6 O 1.42101 * 106.40238 * 311.46388 * 5 4 2 7 7 O 1.42099 * 106.40264 * 178.54323 * 5 4 2 8 8 C 1.76206 * 107.21555 * 65.00397 * 5 4 2 9 9 C 1.38361 * 119.85107 * 270.24982 * 8 5 4 10 10 C 1.37955 * 120.14138 * 180.25791 * 9 8 5 11 11 C 1.39575 * 119.85263 * 359.49245 * 10 9 8 12 12 C 1.47848 * 120.14487 * 180.27853 * 11 10 9 13 13 O 1.21550 * 119.99883 * 359.97438 * 12 11 10 14 14 N 1.34779 * 120.00150 * 180.02562 * 12 11 10 15 15 C 1.46501 * 120.00008 * 179.97438 * 14 12 11 16 16 C 1.52996 * 109.47072 * 179.97438 * 15 14 12 17 17 C 1.50695 * 109.47227 * 180.02562 * 16 15 14 18 18 H 1.07998 * 120.00152 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00453 * 179.97438 * 17 16 15 20 20 N 1.31509 * 120.00367 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 119.99758 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47407 * 89.99609 * 21 19 17 23 23 H 1.48493 * 109.47407 * 210.00032 * 21 19 17 24 24 H 1.48507 * 109.47160 * 330.00088 * 21 19 17 25 25 C 1.39579 * 119.71401 * 0.25207 * 11 10 9 26 26 C 1.37958 * 119.84937 * 0.02562 * 25 11 10 27 27 H 1.09002 * 109.47390 * 300.00354 * 1 2 3 28 28 H 1.09002 * 109.47077 * 60.00975 * 1 2 3 29 29 H 1.09008 * 109.47008 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47390 * 239.99646 * 2 1 3 31 31 H 1.08994 * 109.47476 * 180.02562 * 3 2 1 32 32 H 1.09008 * 109.46514 * 299.99889 * 3 2 1 33 33 H 1.08994 * 109.47549 * 59.99385 * 3 2 1 34 34 H 0.97001 * 120.00080 * 325.00982 * 4 2 1 35 35 H 1.07998 * 119.92846 * 0.02562 * 9 8 5 36 36 H 1.08002 * 120.07573 * 179.77464 * 10 9 8 37 37 H 0.96996 * 119.99601 * 359.97438 * 14 12 11 38 38 H 1.08997 * 109.47252 * 300.00049 * 15 14 12 39 39 H 1.09007 * 109.46893 * 60.00137 * 15 14 12 40 40 H 1.09005 * 109.46987 * 299.99854 * 16 15 14 41 41 H 1.08998 * 109.47290 * 60.00029 * 16 15 14 42 42 H 0.97006 * 119.99882 * 180.02562 * 20 19 17 43 43 H 1.07997 * 120.07575 * 180.02562 * 25 11 10 44 44 H 1.08006 * 119.92205 * 179.97438 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 16 3.4019 -1.5974 1.1219 6 8 3.2727 -2.4337 -0.0196 7 8 3.6230 -2.1000 2.4325 8 6 4.7319 -0.4928 0.7817 9 6 5.0802 -0.2173 -0.5287 10 6 6.1239 0.6425 -0.8020 11 6 6.8221 1.2430 0.2468 12 6 7.9377 2.1702 -0.0387 13 8 8.2489 2.4107 -1.1888 14 7 8.6103 2.7481 0.9763 15 6 9.7161 3.6665 0.6934 16 6 10.3032 4.1787 2.0101 17 6 11.4403 5.1239 1.7190 18 1 11.7164 5.3381 0.6972 19 6 12.1277 5.7160 2.7573 20 7 13.1197 6.5411 2.5033 21 14 11.6498 5.3460 4.5249 22 1 12.4211 4.1739 5.0113 23 1 11.9511 6.5247 5.3762 24 1 10.1971 5.0451 4.5923 25 6 6.4622 0.9648 1.5664 26 6 5.4202 0.0987 1.8260 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 3.1299 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8901 33 1 1.6766 1.9564 0.8899 34 1 1.5311 -0.6166 2.0317 35 1 4.5362 -0.6791 -1.3394 36 1 6.3972 0.8540 -1.8252 37 1 8.3622 2.5559 1.8941 38 1 10.4885 3.1426 0.1302 39 1 9.3479 4.5090 0.1079 40 1 9.5307 4.7028 2.5728 41 1 10.6713 3.3365 2.5959 42 1 13.6034 6.9574 3.2339 43 1 6.9982 1.4266 2.3824 44 1 5.1410 -0.1177 2.8466 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273025339.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:50:43 Heat of formation + Delta-G solvation = -123.946924 kcal Electronic energy + Delta-G solvation = -26726.642434 eV Core-core repulsion = 22769.392115 eV Total energy + Delta-G solvation = -3957.250319 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.40513 -39.53929 -38.50239 -37.67577 -37.03364 -36.78874 -34.90837 -33.15703 -32.27216 -31.61883 -31.47917 -28.00923 -27.26540 -25.19505 -23.92095 -22.68828 -22.39482 -21.86895 -20.69476 -19.48375 -19.06180 -18.85224 -18.25144 -17.42395 -16.92469 -16.65047 -16.33767 -16.12358 -16.03709 -15.59064 -15.28819 -15.21551 -15.14218 -14.72547 -14.62025 -14.34972 -14.22432 -14.05032 -13.62847 -13.38570 -13.30341 -13.22395 -13.07207 -13.00618 -12.51752 -12.42745 -12.35229 -12.24982 -12.20395 -12.12022 -11.83621 -11.77426 -11.54236 -11.15557 -10.80148 -10.70446 -10.50868 -10.21473 -10.14980 -8.30943 -6.38634 -0.88756 -0.61406 0.14586 1.38971 1.41390 1.45037 1.52340 1.96521 2.03224 2.35978 2.47665 2.71715 3.04166 3.19376 3.49094 3.64098 3.75676 3.87809 4.11262 4.16084 4.18377 4.27551 4.31196 4.37951 4.43862 4.49535 4.70674 4.78432 4.84422 4.85715 4.86412 4.90289 5.03207 5.04002 5.10654 5.28157 5.33645 5.36982 5.39918 5.42247 5.57621 5.60311 6.10943 6.19796 6.42159 6.69200 7.04649 7.25969 8.85660 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.019143 B = 0.002205 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.313531 B =12696.900708 C =13016.786222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.134 3.866 3 C -0.180 4.180 4 N -1.099 6.099 5 S 2.716 3.284 6 O -0.980 6.980 7 O -0.980 6.980 8 C -0.658 4.658 9 C -0.026 4.026 10 C -0.091 4.091 11 C -0.085 4.085 12 C 0.544 3.456 13 O -0.576 6.576 14 N -0.706 5.706 15 C 0.143 3.857 16 C -0.014 4.014 17 C -0.540 4.540 18 H 0.029 0.971 19 C 0.003 3.997 20 N -0.950 5.950 21 Si 0.959 3.041 22 H -0.266 1.266 23 H -0.288 1.288 24 H -0.234 1.234 25 C -0.104 4.104 26 C -0.024 4.024 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.062 0.938 30 H 0.093 0.907 31 H 0.051 0.949 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.430 0.570 35 H 0.164 0.836 36 H 0.142 0.858 37 H 0.414 0.586 38 H 0.048 0.952 39 H 0.050 0.950 40 H 0.040 0.960 41 H 0.037 0.963 42 H 0.268 0.732 43 H 0.160 0.840 44 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.597 -16.380 0.286 34.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.028 3.972 3 C -0.239 4.239 4 N -0.862 5.862 5 S 2.805 3.195 6 O -0.970 6.970 7 O -0.971 6.971 8 C -0.745 4.745 9 C -0.045 4.045 10 C -0.110 4.110 11 C -0.089 4.089 12 C 0.331 3.669 13 O -0.457 6.457 14 N -0.357 5.357 15 C 0.019 3.981 16 C -0.051 4.051 17 C -0.578 4.578 18 H 0.047 0.953 19 C -0.194 4.194 20 N -0.590 5.590 21 Si 0.781 3.219 22 H -0.191 1.191 23 H -0.214 1.214 24 H -0.156 1.156 25 C -0.124 4.124 26 C -0.043 4.043 27 H 0.090 0.910 28 H 0.100 0.900 29 H 0.081 0.919 30 H 0.111 0.889 31 H 0.070 0.930 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.267 0.733 35 H 0.182 0.818 36 H 0.160 0.840 37 H 0.252 0.748 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.058 0.942 41 H 0.055 0.945 42 H 0.077 0.923 43 H 0.178 0.822 44 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -30.064 -16.987 -0.503 34.534 hybrid contribution 0.918 1.118 0.876 1.691 sum -29.146 -15.869 0.373 33.188 Atomic orbital electron populations 1.22064 0.92338 1.03119 1.03939 1.21034 0.97065 0.92845 0.86293 1.22438 1.01502 0.96063 1.03883 1.55381 1.41370 1.69142 1.20322 1.01126 0.72859 0.73071 0.72441 1.93572 1.86185 1.64065 1.53129 1.93574 1.85715 1.78237 1.39526 1.31219 1.22059 1.20535 1.00698 1.21068 0.94702 0.93258 0.95460 1.21473 0.94528 0.95288 0.99746 1.20275 0.95492 0.97233 0.95869 1.18760 0.82634 0.80624 0.84867 1.90764 1.68765 1.63988 1.22215 1.46014 1.33947 1.45770 1.09978 1.21133 0.87070 0.91186 0.98674 1.19668 0.95530 0.96167 0.93783 1.21232 1.16078 1.26803 0.93694 0.95260 1.26096 0.94264 0.94073 1.04982 1.70076 1.23057 1.31548 1.34307 0.85545 0.80918 0.77977 0.77470 1.19111 1.21372 1.15640 1.21727 0.97429 0.97775 0.95426 1.21136 0.92265 0.91294 0.99580 0.90988 0.89965 0.91857 0.88919 0.92978 0.90210 0.91147 0.73271 0.81836 0.84029 0.74774 0.93383 0.93204 0.94193 0.94492 0.92334 0.82210 0.81342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.72 9.44 71.98 0.68 -0.04 16 2 C 0.13 0.99 3.52 44.99 0.16 1.15 16 3 C -0.18 -1.37 9.52 71.98 0.69 -0.69 16 4 N -1.10 -9.19 5.47 -169.39 -0.93 -10.12 16 5 S 2.72 40.50 5.71 -56.49 -0.32 40.18 16 6 O -0.98 -20.00 16.61 -128.00 -2.13 -22.12 16 7 O -0.98 -19.54 17.27 -128.00 -2.21 -21.75 16 8 C -0.66 -10.19 5.08 22.33 0.11 -10.07 16 9 C -0.03 -0.42 8.54 22.23 0.19 -0.23 16 10 C -0.09 -1.89 9.60 22.53 0.22 -1.68 16 11 C -0.09 -1.97 5.87 -20.09 -0.12 -2.09 16 12 C 0.54 16.90 7.77 86.79 0.67 17.57 16 13 O -0.58 -22.72 16.35 -3.87 -0.06 -22.79 16 14 N -0.71 -21.18 5.51 -465.97 -2.57 -23.74 16 15 C 0.14 5.61 5.61 86.38 0.48 6.09 16 16 C -0.01 -0.59 4.15 29.85 0.12 -0.46 16 17 C -0.54 -30.16 9.66 25.60 0.25 -29.91 16 18 H 0.03 1.84 7.99 -2.91 -0.02 1.82 16 19 C 0.00 0.17 5.47 84.66 0.46 0.63 16 20 N -0.95 -58.55 13.96 21.45 0.30 -58.25 16 21 Si 0.96 41.26 27.47 68.60 1.88 43.14 16 22 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 23 H -0.29 -12.40 7.11 99.48 0.71 -11.69 16 24 H -0.23 -8.75 6.54 99.48 0.65 -8.10 16 25 C -0.10 -1.78 9.54 22.53 0.21 -1.56 16 26 C -0.02 -0.35 9.50 22.23 0.21 -0.14 16 27 H 0.07 0.22 8.14 -2.39 -0.02 0.20 16 28 H 0.08 0.24 8.14 -2.39 -0.02 0.22 16 29 H 0.06 0.33 8.14 -2.38 -0.02 0.31 16 30 H 0.09 0.72 7.50 -2.39 -0.02 0.70 16 31 H 0.05 0.52 6.15 -2.39 -0.01 0.51 16 32 H 0.08 0.49 8.14 -2.38 -0.02 0.47 16 33 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.43 1.84 8.84 -96.75 -0.85 0.99 16 35 H 0.16 2.00 7.61 -2.91 -0.02 1.98 16 36 H 0.14 3.05 7.65 -2.91 -0.02 3.03 16 37 H 0.41 9.34 6.51 -92.71 -0.60 8.74 16 38 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.05 2.11 8.14 -2.38 -0.02 2.09 16 40 H 0.04 1.59 7.20 -2.38 -0.02 1.57 16 41 H 0.04 1.46 7.57 -2.39 -0.02 1.44 16 42 H 0.27 15.33 8.31 -92.70 -0.77 14.56 16 43 H 0.16 1.95 6.41 -2.91 -0.02 1.93 16 44 H 0.17 1.73 7.60 -2.91 -0.02 1.70 16 Total: -1.00 -80.07 378.70 -2.16 -82.23 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -0.48 Total: 14.64 kcal Atomic # 6 Polarization: -25.77 SS G_CDS: 4.34 Total: -21.42 kcal Atomic # 7 Polarization: -88.91 SS G_CDS: -3.19 Total: -92.11 kcal Atomic # 8 Polarization: -62.26 SS G_CDS: -4.40 Total: -66.66 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 1.88 Total: 43.14 kcal Atomic # 16 Polarization: 40.50 SS G_CDS: -0.32 Total: 40.18 kcal Total: -80.07 -2.16 -82.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273025339.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.712 kcal (2) G-P(sol) polarization free energy of solvation -80.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds