Wall clock time and date at job start Wed Apr 1 2020 00:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47196 * 2 1 4 4 S 1.81398 * 109.47406 * 179.97438 * 3 2 1 5 5 O 1.42094 * 110.54291 * 73.36087 * 4 3 2 6 6 O 1.42108 * 110.54331 * 296.60994 * 4 3 2 7 7 N 1.65602 * 104.44890 * 184.98674 * 4 3 2 8 8 C 1.39048 * 120.00168 * 298.83211 * 7 4 3 9 9 C 1.39216 * 119.93107 * 133.77230 * 8 7 4 10 10 C 1.37607 * 120.07287 * 180.27807 * 9 8 7 11 11 C 1.39798 * 119.92365 * 359.47166 * 10 9 8 12 12 C 1.47521 * 120.06900 * 180.23260 * 11 10 9 13 13 O 1.21589 * 120.00513 * 180.32283 * 12 11 10 14 14 N 1.34779 * 119.99528 * 0.31758 * 12 11 10 15 15 C 1.46503 * 119.99502 * 180.02562 * 14 12 11 16 16 C 1.53008 * 109.46950 * 180.02562 * 15 14 12 17 17 C 1.50698 * 109.47127 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00182 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99758 * 179.97438 * 17 16 15 20 20 N 1.31517 * 120.00208 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99938 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47012 * 0.02562 * 21 19 17 23 23 H 1.48495 * 109.47171 * 119.99968 * 21 19 17 24 24 H 1.48495 * 109.47204 * 240.00430 * 21 19 17 25 25 C 1.39800 * 119.86422 * 0.55003 * 11 10 9 26 26 C 1.37606 * 119.93076 * 359.70319 * 25 11 10 27 27 H 1.09003 * 109.47339 * 300.00193 * 1 2 3 28 28 H 1.09000 * 109.47098 * 60.00065 * 1 2 3 29 29 H 1.09004 * 109.46877 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47339 * 239.99807 * 2 1 3 31 31 H 1.09000 * 109.47098 * 119.99935 * 2 1 3 32 32 H 1.09003 * 109.47134 * 59.99682 * 3 2 1 33 33 H 1.09000 * 109.47044 * 299.99968 * 3 2 1 34 34 H 0.97006 * 119.99573 * 118.83512 * 7 4 3 35 35 H 1.08005 * 119.96402 * 0.02562 * 9 8 7 36 36 H 1.07993 * 120.03714 * 179.72884 * 10 9 8 37 37 H 0.96991 * 120.00297 * 0.02562 * 14 12 11 38 38 H 1.09000 * 109.47097 * 299.99548 * 15 14 12 39 39 H 1.08999 * 109.47426 * 59.99962 * 15 14 12 40 40 H 1.09000 * 109.46761 * 299.99643 * 16 15 14 41 41 H 1.08999 * 109.47178 * 59.99699 * 16 15 14 42 42 H 0.96999 * 119.99504 * 180.02562 * 20 19 17 43 43 H 1.08000 * 120.03134 * 179.68289 * 25 11 10 44 44 H 1.07998 * 119.96807 * 179.97438 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 3.8539 1.4425 0.0008 5 8 4.3531 1.0614 -1.2738 6 8 4.3521 0.8467 1.1908 7 7 4.2670 3.0402 0.1401 8 6 3.8785 3.9468 -0.8400 9 6 3.3203 5.1685 -0.4741 10 6 2.9295 6.0655 -1.4417 11 6 3.1039 5.7534 -2.7932 12 6 2.6909 6.7148 -3.8330 13 8 2.8377 6.4397 -5.0083 14 7 2.1507 7.8982 -3.4803 15 6 1.7400 8.8527 -4.5130 16 6 1.1634 10.1051 -3.8495 17 6 0.7415 11.0873 -4.9118 18 1 0.8712 10.8426 -5.9557 19 6 0.1890 12.2979 -4.5509 20 7 0.0306 12.5957 -3.2797 21 14 -0.3346 13.5151 -5.8676 22 1 -0.0527 12.9446 -7.2094 23 1 -1.7892 13.7859 -5.7411 24 1 0.4213 14.7821 -5.6992 25 6 3.6644 4.5255 -3.1574 26 6 4.0483 3.6306 -2.1851 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 4.7801 3.3434 0.9055 35 1 3.1900 5.4108 0.5703 36 1 2.4925 7.0112 -1.1573 37 1 2.0338 8.1178 -2.5428 38 1 2.6040 9.1276 -5.1180 39 1 0.9816 8.3961 -5.1489 40 1 0.2995 9.8306 -3.2443 41 1 1.9221 10.5616 -3.2139 42 1 -0.3584 13.4472 -3.0260 43 1 3.7956 4.2795 -4.2008 44 1 4.4809 2.6818 -2.4658 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273128779.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:00:03 Heat of formation + Delta-G solvation = -98.306304 kcal Electronic energy + Delta-G solvation = -26271.895824 eV Core-core repulsion = 22315.757366 eV Total energy + Delta-G solvation = -3956.138458 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.27813 -38.74795 -37.59569 -36.51545 -35.44715 -35.33745 -34.97017 -32.93636 -31.32009 -30.33059 -28.94377 -28.26455 -25.07167 -23.52328 -22.98184 -22.52601 -21.08060 -20.41380 -19.87500 -18.45820 -18.13570 -17.52674 -16.97733 -16.49438 -16.33260 -15.73911 -15.32452 -14.99594 -14.88487 -14.60108 -14.48541 -14.14377 -13.97092 -13.63082 -13.46120 -13.23301 -13.16273 -13.10498 -12.83145 -12.63080 -12.44475 -12.33357 -12.10968 -11.99694 -11.65767 -11.49595 -11.24807 -11.09918 -11.08523 -10.75963 -10.65931 -10.39010 -9.91448 -9.54793 -9.32589 -9.25803 -8.80771 -8.56042 -8.38585 -6.13418 -4.16097 -0.39618 0.61904 1.09001 2.05003 2.84496 3.15206 3.25952 3.33624 3.38270 3.57135 3.64858 3.76166 3.92182 4.18273 4.38668 4.46120 4.53885 4.60851 4.69401 4.78253 4.86848 5.03275 5.05202 5.07313 5.24016 5.28637 5.38964 5.41627 5.58276 5.65248 5.75804 5.86442 6.04099 6.16565 6.29726 6.34322 6.34857 6.65313 6.68287 6.82558 7.46604 7.56167 7.84785 7.91797 8.23097 8.54116 8.90050 9.49066 10.98222 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.021269 B = 0.001906 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.163385 B =14686.407262 C =14960.024969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.116 4.116 3 C -0.624 4.624 4 S 2.603 3.397 5 O -0.945 6.945 6 O -0.952 6.952 7 N -1.057 6.057 8 C 0.152 3.848 9 C -0.138 4.138 10 C -0.069 4.069 11 C -0.133 4.133 12 C 0.546 3.454 13 O -0.545 6.545 14 N -0.715 5.715 15 C 0.121 3.879 16 C 0.012 3.988 17 C -0.521 4.521 18 H 0.060 0.940 19 C 0.058 3.942 20 N -0.894 5.894 21 Si 0.897 3.103 22 H -0.271 1.271 23 H -0.283 1.283 24 H -0.283 1.283 25 C -0.039 4.039 26 C -0.163 4.163 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.137 0.863 33 H 0.138 0.862 34 H 0.427 0.573 35 H 0.135 0.865 36 H 0.136 0.864 37 H 0.397 0.603 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.023 0.977 41 H 0.023 0.977 42 H 0.262 0.738 43 H 0.144 0.856 44 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.722 -24.044 12.453 27.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.155 4.155 3 C -0.754 4.754 4 S 2.698 3.302 5 O -0.934 6.934 6 O -0.942 6.942 7 N -0.807 5.807 8 C 0.056 3.944 9 C -0.159 4.159 10 C -0.088 4.088 11 C -0.137 4.137 12 C 0.333 3.667 13 O -0.424 6.424 14 N -0.365 5.365 15 C -0.001 4.001 16 C -0.026 4.026 17 C -0.560 4.560 18 H 0.079 0.921 19 C -0.143 4.143 20 N -0.533 5.533 21 Si 0.725 3.275 22 H -0.196 1.196 23 H -0.209 1.209 24 H -0.209 1.209 25 C -0.059 4.059 26 C -0.183 4.183 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.155 0.845 33 H 0.156 0.844 34 H 0.265 0.735 35 H 0.153 0.847 36 H 0.154 0.846 37 H 0.231 0.769 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.041 0.959 41 H 0.041 0.959 42 H 0.071 0.929 43 H 0.162 0.838 44 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 5.298 -24.891 11.552 27.948 hybrid contribution -0.776 1.601 0.361 1.816 sum 4.522 -23.289 11.914 26.548 Atomic orbital electron populations 1.21723 0.93478 1.02527 1.02733 1.21277 0.99086 0.91450 1.03727 1.30577 1.25776 1.06562 1.12502 1.05425 0.77947 0.72186 0.74614 1.93583 1.77075 1.80473 1.42318 1.93626 1.78203 1.74097 1.48251 1.53228 1.67446 1.27439 1.32601 1.17568 0.97672 0.91402 0.87759 1.21074 1.00608 0.93966 1.00288 1.21299 0.96767 0.99207 0.91561 1.20280 1.03515 0.96268 0.93594 1.18175 0.78284 0.81999 0.88262 1.90764 1.55682 1.77306 1.18682 1.46286 1.61752 1.17108 1.11382 1.21782 0.98923 0.89583 0.89852 1.19340 0.96260 0.90263 0.96708 1.21082 1.41011 1.00830 0.93031 0.92138 1.25001 0.95604 0.98217 0.95512 1.69961 1.44622 1.23299 1.15431 0.86451 0.78232 0.80931 0.81923 1.19560 1.20937 1.20929 1.21224 0.93042 0.91035 1.00562 1.21913 1.02621 1.02933 0.90875 0.92119 0.91937 0.91759 0.90224 0.90154 0.84511 0.84370 0.73542 0.84710 0.84606 0.76867 0.92297 0.92303 0.95913 0.95894 0.92884 0.83800 0.82053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 9.91 37.15 0.37 -0.32 16 2 C -0.12 -0.60 5.94 -26.73 -0.16 -0.76 16 3 C -0.62 -3.17 5.92 37.16 0.22 -2.95 16 4 S 2.60 19.35 5.35 -107.50 -0.58 18.78 16 5 O -0.94 -9.84 15.15 -57.54 -0.87 -10.71 16 6 O -0.95 -9.53 18.08 -57.54 -1.04 -10.57 16 7 N -1.06 -6.92 5.64 32.41 0.18 -6.74 16 8 C 0.15 1.29 6.01 -83.86 -0.50 0.79 16 9 C -0.14 -1.10 9.95 -39.45 -0.39 -1.49 16 10 C -0.07 -0.68 9.53 -39.23 -0.37 -1.06 16 11 C -0.13 -1.70 5.88 -104.95 -0.62 -2.32 16 12 C 0.55 9.15 7.76 -12.48 -0.10 9.05 16 13 O -0.55 -11.06 16.34 5.29 0.09 -10.97 16 14 N -0.72 -12.04 5.51 -61.35 -0.34 -12.38 16 15 C 0.12 2.49 5.61 -4.04 -0.02 2.47 16 16 C 0.01 0.28 5.09 -27.88 -0.14 0.14 16 17 C -0.52 -14.17 9.11 -34.44 -0.31 -14.48 16 18 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 20 N -0.89 -25.63 13.29 55.43 0.74 -24.90 16 21 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 22 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 C -0.04 -0.47 9.58 -39.23 -0.38 -0.84 16 26 C -0.16 -1.66 9.21 -39.45 -0.36 -2.02 16 27 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.14 0.44 8.14 -51.92 -0.42 0.02 16 33 H 0.14 0.64 8.14 -51.92 -0.42 0.22 16 34 H 0.43 1.94 8.92 -34.47 -0.31 1.63 16 35 H 0.14 0.71 8.06 -52.48 -0.42 0.29 16 36 H 0.14 1.15 6.39 -52.49 -0.34 0.82 16 37 H 0.40 5.62 6.49 -40.82 -0.26 5.35 16 38 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 39 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 43 H 0.14 1.74 7.64 -52.49 -0.40 1.34 16 44 H 0.16 1.66 5.61 -52.49 -0.29 1.36 16 LS Contribution 383.87 15.07 5.78 5.78 Total: -1.00 -35.64 383.87 -10.14 -45.78 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -6.22 Total: 2.14 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: -2.87 Total: -12.27 kcal Atomic # 7 Polarization: -44.60 SS G_CDS: 0.58 Total: -44.02 kcal Atomic # 8 Polarization: -30.42 SS G_CDS: -1.83 Total: -32.25 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 19.35 SS G_CDS: -0.58 Total: 18.78 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.64 -10.14 -45.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273128779.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.526 kcal (2) G-P(sol) polarization free energy of solvation -35.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds