Wall clock time and date at job start Wed Apr 1 2020 00:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47196 * 2 1 4 4 S 1.81398 * 109.47406 * 179.97438 * 3 2 1 5 5 O 1.42094 * 110.54291 * 73.36087 * 4 3 2 6 6 O 1.42108 * 110.54331 * 296.60994 * 4 3 2 7 7 N 1.65602 * 104.44890 * 184.98674 * 4 3 2 8 8 C 1.39048 * 120.00168 * 298.83211 * 7 4 3 9 9 C 1.39216 * 119.93107 * 133.77230 * 8 7 4 10 10 C 1.37607 * 120.07287 * 180.27807 * 9 8 7 11 11 C 1.39798 * 119.92365 * 359.47166 * 10 9 8 12 12 C 1.47521 * 120.06900 * 180.23260 * 11 10 9 13 13 O 1.21589 * 120.00513 * 180.32283 * 12 11 10 14 14 N 1.34779 * 119.99528 * 0.31758 * 12 11 10 15 15 C 1.46503 * 119.99502 * 180.02562 * 14 12 11 16 16 C 1.53008 * 109.46950 * 180.02562 * 15 14 12 17 17 C 1.50698 * 109.47127 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00182 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99758 * 179.97438 * 17 16 15 20 20 N 1.31517 * 120.00208 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99938 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47012 * 0.02562 * 21 19 17 23 23 H 1.48495 * 109.47171 * 119.99968 * 21 19 17 24 24 H 1.48495 * 109.47204 * 240.00430 * 21 19 17 25 25 C 1.39800 * 119.86422 * 0.55003 * 11 10 9 26 26 C 1.37606 * 119.93076 * 359.70319 * 25 11 10 27 27 H 1.09003 * 109.47339 * 300.00193 * 1 2 3 28 28 H 1.09000 * 109.47098 * 60.00065 * 1 2 3 29 29 H 1.09004 * 109.46877 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47339 * 239.99807 * 2 1 3 31 31 H 1.09000 * 109.47098 * 119.99935 * 2 1 3 32 32 H 1.09003 * 109.47134 * 59.99682 * 3 2 1 33 33 H 1.09000 * 109.47044 * 299.99968 * 3 2 1 34 34 H 0.97006 * 119.99573 * 118.83512 * 7 4 3 35 35 H 1.08005 * 119.96402 * 0.02562 * 9 8 7 36 36 H 1.07993 * 120.03714 * 179.72884 * 10 9 8 37 37 H 0.96991 * 120.00297 * 0.02562 * 14 12 11 38 38 H 1.09000 * 109.47097 * 299.99548 * 15 14 12 39 39 H 1.08999 * 109.47426 * 59.99962 * 15 14 12 40 40 H 1.09000 * 109.46761 * 299.99643 * 16 15 14 41 41 H 1.08999 * 109.47178 * 59.99699 * 16 15 14 42 42 H 0.96999 * 119.99504 * 180.02562 * 20 19 17 43 43 H 1.08000 * 120.03134 * 179.68289 * 25 11 10 44 44 H 1.07998 * 119.96807 * 179.97438 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 3.8539 1.4425 0.0008 5 8 4.3531 1.0614 -1.2738 6 8 4.3521 0.8467 1.1908 7 7 4.2670 3.0402 0.1401 8 6 3.8785 3.9468 -0.8400 9 6 3.3203 5.1685 -0.4741 10 6 2.9295 6.0655 -1.4417 11 6 3.1039 5.7534 -2.7932 12 6 2.6909 6.7148 -3.8330 13 8 2.8377 6.4397 -5.0083 14 7 2.1507 7.8982 -3.4803 15 6 1.7400 8.8527 -4.5130 16 6 1.1634 10.1051 -3.8495 17 6 0.7415 11.0873 -4.9118 18 1 0.8712 10.8426 -5.9557 19 6 0.1890 12.2979 -4.5509 20 7 0.0306 12.5957 -3.2797 21 14 -0.3346 13.5151 -5.8676 22 1 -0.0527 12.9446 -7.2094 23 1 -1.7892 13.7859 -5.7411 24 1 0.4213 14.7821 -5.6992 25 6 3.6644 4.5255 -3.1574 26 6 4.0483 3.6306 -2.1851 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 4.7801 3.3434 0.9055 35 1 3.1900 5.4108 0.5703 36 1 2.4925 7.0112 -1.1573 37 1 2.0338 8.1178 -2.5428 38 1 2.6040 9.1276 -5.1180 39 1 0.9816 8.3961 -5.1489 40 1 0.2995 9.8306 -3.2443 41 1 1.9221 10.5616 -3.2139 42 1 -0.3584 13.4472 -3.0260 43 1 3.7956 4.2795 -4.2008 44 1 4.4809 2.6818 -2.4658 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273128779.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:00:03 Heat of formation + Delta-G solvation = -124.169281 kcal Electronic energy + Delta-G solvation = -26273.017326 eV Core-core repulsion = 22315.757366 eV Total energy + Delta-G solvation = -3957.259961 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.31390 -39.85847 -38.30275 -37.21170 -36.65066 -36.10916 -35.82381 -34.84147 -32.28857 -31.69034 -30.17333 -28.66346 -26.84067 -24.57242 -23.90372 -22.94542 -22.78702 -21.61672 -20.52636 -19.27638 -18.81552 -18.64169 -18.39073 -17.56827 -17.00359 -16.86940 -16.49177 -16.47963 -15.88993 -15.75581 -15.66645 -14.95861 -14.87967 -14.55492 -14.46926 -14.31981 -14.25372 -13.80610 -13.65884 -13.49321 -13.30115 -13.23189 -13.17042 -12.96123 -12.94942 -12.53385 -12.42615 -12.33621 -12.23587 -11.84762 -11.71685 -11.67825 -11.44837 -11.41008 -10.96135 -10.60110 -10.11672 -10.09059 -9.48195 -8.23657 -6.33257 -0.99755 -0.25383 0.30986 1.41447 1.43062 1.45919 1.55586 1.76178 2.20904 2.45167 2.59023 2.75520 3.08819 3.11439 3.49691 3.67902 3.77737 3.83296 3.85773 4.03194 4.16808 4.27482 4.38284 4.44865 4.50151 4.51218 4.66612 4.69972 4.81754 4.86376 5.01684 5.05382 5.06858 5.12021 5.24099 5.27680 5.32593 5.38982 5.49659 5.59609 5.68947 5.79707 5.98967 6.17216 6.59359 6.79873 7.21531 7.35926 8.88244 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.021269 B = 0.001906 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.163385 B =14686.407262 C =14960.024969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.128 4.128 3 C -0.608 4.608 4 S 2.608 3.392 5 O -0.980 6.980 6 O -0.978 6.978 7 N -1.048 6.048 8 C 0.169 3.831 9 C -0.124 4.124 10 C -0.061 4.061 11 C -0.155 4.155 12 C 0.547 3.453 13 O -0.589 6.589 14 N -0.710 5.710 15 C 0.139 3.861 16 C 0.023 3.977 17 C -0.545 4.545 18 H 0.058 0.942 19 C 0.008 3.992 20 N -0.925 5.925 21 Si 0.963 3.037 22 H -0.267 1.267 23 H -0.277 1.277 24 H -0.277 1.277 25 C -0.046 4.046 26 C -0.169 4.169 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.164 0.836 33 H 0.146 0.854 34 H 0.439 0.561 35 H 0.174 0.826 36 H 0.152 0.848 37 H 0.411 0.589 38 H 0.047 0.953 39 H 0.048 0.952 40 H 0.012 0.988 41 H 0.011 0.989 42 H 0.266 0.734 43 H 0.131 0.869 44 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.120 -24.174 14.253 28.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.168 4.168 3 C -0.741 4.741 4 S 2.707 3.293 5 O -0.970 6.970 6 O -0.968 6.968 7 N -0.799 5.799 8 C 0.072 3.928 9 C -0.145 4.145 10 C -0.081 4.081 11 C -0.159 4.159 12 C 0.336 3.664 13 O -0.471 6.471 14 N -0.361 5.361 15 C 0.016 3.984 16 C -0.015 4.015 17 C -0.584 4.584 18 H 0.076 0.924 19 C -0.191 4.191 20 N -0.564 5.564 21 Si 0.788 3.212 22 H -0.191 1.191 23 H -0.202 1.202 24 H -0.203 1.203 25 C -0.065 4.065 26 C -0.190 4.190 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.105 0.895 32 H 0.181 0.819 33 H 0.165 0.835 34 H 0.279 0.721 35 H 0.191 0.809 36 H 0.170 0.830 37 H 0.248 0.752 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.030 0.970 41 H 0.029 0.971 42 H 0.075 0.925 43 H 0.149 0.851 44 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 4.743 -25.032 13.397 28.785 hybrid contribution -0.591 1.533 -0.105 1.647 sum 4.152 -23.499 13.291 27.315 Atomic orbital electron populations 1.21757 0.92894 1.03093 1.02955 1.21431 0.99619 0.91519 1.04197 1.30467 1.22191 1.07181 1.14287 1.05115 0.79035 0.71894 0.73253 1.93542 1.78717 1.81105 1.43645 1.93592 1.79589 1.74688 1.48961 1.53051 1.67653 1.26718 1.32513 1.17593 0.96200 0.91675 0.87308 1.21388 0.98772 0.92666 1.01693 1.21487 0.96027 1.00159 0.90378 1.19961 1.06306 0.95839 0.93771 1.18751 0.77014 0.81977 0.88619 1.90733 1.57413 1.78118 1.20813 1.46044 1.61912 1.16751 1.11351 1.21278 0.97930 0.89051 0.90187 1.19144 0.95435 0.91054 0.95851 1.21489 1.41318 1.01928 0.93655 0.92420 1.25835 0.95559 1.00033 0.97675 1.70051 1.45251 1.24014 1.17124 0.85423 0.78007 0.78506 0.79267 1.19117 1.20223 1.20290 1.21136 0.93612 0.91294 1.00494 1.21880 1.03002 1.02535 0.91589 0.91404 0.92192 0.91165 0.90269 0.89502 0.81853 0.83548 0.72084 0.80862 0.83008 0.75175 0.93474 0.93335 0.96965 0.97069 0.92542 0.85137 0.82373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.91 71.98 0.71 -0.37 16 2 C -0.13 -1.08 5.94 30.59 0.18 -0.90 16 3 C -0.61 -4.55 5.92 71.98 0.43 -4.12 16 4 S 2.61 34.59 5.35 -56.49 -0.30 34.29 16 5 O -0.98 -19.97 15.15 -127.65 -1.93 -21.90 16 6 O -0.98 -18.21 18.08 -127.65 -2.31 -20.52 16 7 N -1.05 -10.93 5.64 -51.38 -0.29 -11.22 16 8 C 0.17 2.42 6.01 38.47 0.23 2.65 16 9 C -0.12 -1.50 9.95 22.36 0.22 -1.27 16 10 C -0.06 -1.06 9.53 22.50 0.21 -0.84 16 11 C -0.15 -3.87 5.88 -20.07 -0.12 -3.99 16 12 C 0.55 18.56 7.76 86.69 0.67 19.24 16 13 O -0.59 -24.75 16.34 -4.00 -0.07 -24.81 16 14 N -0.71 -23.92 5.51 -466.26 -2.57 -26.48 16 15 C 0.14 5.86 5.61 86.38 0.48 6.35 16 16 C 0.02 1.10 5.09 29.85 0.15 1.26 16 17 C -0.55 -29.93 9.11 25.60 0.23 -29.70 16 18 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 19 C 0.01 0.43 5.46 84.65 0.46 0.89 16 20 N -0.92 -52.97 13.29 21.45 0.28 -52.69 16 21 Si 0.96 43.02 29.54 68.60 2.03 45.04 16 22 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 23 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 24 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 25 C -0.05 -1.09 9.58 22.50 0.22 -0.87 16 26 C -0.17 -3.29 9.21 22.36 0.21 -3.08 16 27 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 28 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.07 0.43 8.14 -2.38 -0.02 0.41 16 30 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.16 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.15 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.44 2.62 8.92 -96.74 -0.86 1.76 16 35 H 0.17 0.84 8.06 -2.91 -0.02 0.82 16 36 H 0.15 2.11 6.39 -2.91 -0.02 2.09 16 37 H 0.41 11.30 6.49 -92.71 -0.60 10.69 16 38 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.27 14.27 8.31 -92.71 -0.77 13.50 16 43 H 0.13 3.37 7.64 -2.91 -0.02 3.35 16 44 H 0.16 3.23 5.61 -2.91 -0.02 3.21 16 Total: -1.00 -77.71 383.87 -1.29 -79.00 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -0.43 Total: 14.07 kcal Atomic # 6 Polarization: -19.08 SS G_CDS: 4.30 Total: -14.78 kcal Atomic # 7 Polarization: -87.82 SS G_CDS: -2.57 Total: -90.39 kcal Atomic # 8 Polarization: -62.93 SS G_CDS: -4.31 Total: -67.23 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal Atomic # 16 Polarization: 34.59 SS G_CDS: -0.30 Total: 34.29 kcal Total: -77.71 -1.29 -79.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273128779.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.171 kcal (2) G-P(sol) polarization free energy of solvation -77.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds