Wall clock time and date at job start Tue Mar 31 2020 23:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47254 * 2 1 4 4 N 1.46498 * 109.46830 * 119.99748 * 2 1 3 5 5 S 1.65599 * 120.00101 * 144.99985 * 4 2 1 6 6 O 1.42102 * 104.27896 * 308.92880 * 5 4 2 7 7 O 1.42101 * 104.27865 * 181.06979 * 5 4 2 8 8 C 1.81408 * 104.44792 * 64.99981 * 5 4 2 9 9 C 1.50701 * 109.46786 * 173.59404 * 8 5 4 10 10 C 1.38251 * 120.00173 * 84.69667 * 9 8 5 11 11 C 1.38213 * 120.00137 * 180.25143 * 10 9 8 12 12 C 1.38256 * 119.99703 * 359.53260 * 11 10 9 13 13 C 1.38210 * 120.00237 * 0.41937 * 12 11 10 14 14 C 1.38210 * 119.99693 * 264.66668 * 9 8 5 15 15 C 1.50702 * 120.00340 * 0.02562 * 14 9 8 16 16 N 1.46500 * 109.46901 * 281.83653 * 15 14 9 17 17 C 1.34773 * 119.99919 * 184.68988 * 16 15 14 18 18 O 1.21694 * 120.00091 * 0.02562 * 17 16 15 19 19 C 1.46378 * 120.00237 * 180.02562 * 17 16 15 20 20 H 1.07999 * 119.99470 * 0.02562 * 19 17 16 21 21 C 1.40047 * 119.99962 * 179.97438 * 19 17 16 22 22 N 1.30676 * 120.00423 * 0.02562 * 21 19 17 23 23 Si 1.86803 * 119.99660 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47354 * 60.00246 * 23 21 19 25 25 H 1.48503 * 109.46927 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47190 * 299.99999 * 23 21 19 27 27 H 1.08994 * 109.47260 * 300.00456 * 1 2 3 28 28 H 1.09003 * 109.46856 * 60.00606 * 1 2 3 29 29 H 1.09004 * 109.47091 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47260 * 239.99544 * 2 1 3 31 31 H 1.09003 * 109.47396 * 59.99316 * 3 2 1 32 32 H 1.09000 * 109.47367 * 179.97438 * 3 2 1 33 33 H 1.09004 * 109.46857 * 300.00014 * 3 2 1 34 34 H 0.97003 * 119.99833 * 325.00050 * 4 2 1 35 35 H 1.09001 * 109.47111 * 53.59520 * 8 5 4 36 36 H 1.08998 * 109.46902 * 293.59347 * 8 5 4 37 37 H 1.08000 * 119.99970 * 359.97438 * 10 9 8 38 38 H 1.08000 * 120.00232 * 179.71630 * 11 10 9 39 39 H 1.08010 * 119.99762 * 180.21459 * 12 11 10 40 40 H 1.08005 * 120.00335 * 179.78900 * 13 12 11 41 41 H 1.09003 * 109.46973 * 41.83738 * 15 14 9 42 42 H 1.09002 * 109.47378 * 161.84186 * 15 14 9 43 43 H 0.97005 * 120.00060 * 4.69444 * 16 15 14 44 44 H 0.96997 * 119.99663 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 16 3.4018 -1.5975 1.1220 6 8 3.1997 -2.4545 0.0066 7 8 3.5464 -2.1242 2.4338 8 6 4.7134 -0.3944 0.7709 9 6 6.0539 -1.0800 0.8343 10 6 6.5427 -1.7462 -0.2741 11 6 7.7699 -2.3794 -0.2144 12 6 8.5129 -2.3383 0.9508 13 6 8.0247 -1.6714 2.0586 14 6 6.7950 -1.0421 2.0003 15 6 6.2622 -0.3159 3.2086 16 7 6.4568 1.1260 3.0367 17 6 6.1411 1.9725 4.0368 18 8 5.6949 1.5391 5.0827 19 6 6.3350 3.4131 3.8649 20 1 6.7307 3.7977 2.9365 21 6 6.0065 4.2928 4.9040 22 7 5.5272 3.8274 6.0271 23 14 6.2533 6.1313 4.6843 24 1 5.4359 6.6073 3.5394 25 1 5.8320 6.8385 5.9203 26 1 7.6874 6.4100 4.4183 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.6766 1.9564 0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.5311 -0.6165 2.0317 35 1 4.6794 0.4061 1.5099 36 1 4.5658 0.0237 -0.2248 37 1 5.9637 -1.7757 -1.1853 38 1 8.1497 -2.9037 -1.0788 39 1 9.4734 -2.8302 0.9965 40 1 8.6036 -1.6422 2.9700 41 1 5.1989 -0.5282 3.3205 42 1 6.7954 -0.6509 4.0983 43 1 6.8128 1.4714 2.2031 44 1 5.3001 4.4367 6.7468 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274177627.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:21 Heat of formation + Delta-G solvation = -96.032802 kcal Electronic energy + Delta-G solvation = -28202.606300 eV Core-core repulsion = 24246.566429 eV Total energy + Delta-G solvation = -3956.039871 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.70818 -37.31973 -37.18228 -36.76234 -35.90027 -34.01923 -32.84748 -32.35807 -30.72400 -30.64998 -27.94777 -27.20324 -26.68114 -24.80538 -22.19701 -21.65778 -20.99774 -19.71455 -19.45902 -17.83988 -17.48307 -16.69739 -16.40483 -15.99892 -15.70311 -15.39197 -14.95698 -14.90996 -14.49494 -14.32154 -14.01514 -13.63814 -13.41750 -13.26574 -12.96072 -12.77671 -12.67856 -12.57494 -12.39478 -12.20461 -12.05262 -11.97763 -11.72190 -11.60958 -11.52225 -11.25275 -11.20316 -11.14157 -10.99191 -10.84642 -10.82734 -10.48516 -10.29304 -9.71900 -8.89504 -8.87581 -8.68520 -7.63808 -7.58345 -6.22475 -4.69096 0.15513 1.31663 1.35953 2.68421 3.11795 3.17310 3.18889 3.62862 3.79043 4.07810 4.15574 4.36524 4.54574 4.56210 4.71168 4.83689 4.88612 4.93283 4.97109 5.03986 5.13206 5.21613 5.38587 5.41681 5.43268 5.57444 5.61558 5.62473 5.72366 5.85850 5.89729 5.97162 6.04390 6.13140 6.17707 6.35887 6.44088 6.46051 6.73228 6.90560 6.94255 7.38826 7.85801 8.00379 8.27059 8.97802 9.47157 10.55338 10.73437 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009062 B = 0.004459 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3089.184715 B = 6277.468302 C = 8293.016904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.137 3.863 3 C -0.183 4.183 4 N -1.115 6.115 5 S 2.606 3.394 6 O -0.959 6.959 7 O -0.945 6.945 8 C -0.590 4.590 9 C -0.080 4.080 10 C -0.113 4.113 11 C -0.122 4.122 12 C -0.112 4.112 13 C -0.103 4.103 14 C -0.067 4.067 15 C 0.157 3.843 16 N -0.763 5.763 17 C 0.553 3.447 18 O -0.576 6.576 19 C -0.545 4.545 20 H 0.067 0.933 21 C 0.088 3.912 22 N -0.766 5.766 23 Si 0.907 3.093 24 H -0.268 1.268 25 H -0.280 1.280 26 H -0.268 1.268 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.090 0.910 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.419 0.581 35 H 0.157 0.843 36 H 0.140 0.860 37 H 0.129 0.871 38 H 0.126 0.874 39 H 0.125 0.875 40 H 0.130 0.870 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.381 0.619 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.423 -7.646 -15.773 17.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.030 3.970 3 C -0.242 4.242 4 N -0.874 5.874 5 S 2.699 3.301 6 O -0.949 6.949 7 O -0.935 6.935 8 C -0.717 4.717 9 C -0.083 4.083 10 C -0.132 4.132 11 C -0.140 4.140 12 C -0.130 4.130 13 C -0.121 4.121 14 C -0.068 4.068 15 C 0.032 3.968 16 N -0.420 5.420 17 C 0.357 3.643 18 O -0.458 6.458 19 C -0.582 4.582 20 H 0.085 0.915 21 C -0.132 4.132 22 N -0.395 5.395 23 Si 0.732 3.268 24 H -0.193 1.193 25 H -0.205 1.205 26 H -0.193 1.193 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.108 0.892 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.254 0.746 35 H 0.175 0.825 36 H 0.158 0.842 37 H 0.147 0.853 38 H 0.144 0.856 39 H 0.143 0.857 40 H 0.148 0.852 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.212 0.788 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.740 -8.875 -14.827 17.680 hybrid contribution 0.397 1.912 -0.310 1.977 sum -3.342 -6.963 -15.137 16.994 Atomic orbital electron populations 1.22035 0.93773 1.02756 1.02870 1.20851 0.96185 0.92921 0.87007 1.22502 1.02119 0.96115 1.03444 1.55758 1.43093 1.69491 1.19092 1.05223 0.74793 0.75419 0.74661 1.93570 1.84230 1.62103 1.55017 1.93633 1.85428 1.76546 1.37877 1.29789 1.11026 1.17559 1.13336 1.18780 0.94457 1.00299 0.94750 1.21119 0.96636 0.97726 0.97688 1.21098 0.94706 0.99899 0.98290 1.21240 0.99811 0.98863 0.93096 1.21183 0.94984 0.96900 0.99047 1.20165 0.94372 0.97210 0.95084 1.19986 1.00343 0.83238 0.93207 1.46278 1.72809 1.03551 1.19367 1.18272 0.77744 0.86514 0.81770 1.90626 1.49232 1.78378 1.27579 1.20822 1.46195 0.89640 1.01571 0.91506 1.25693 0.92898 1.00195 0.94385 1.70008 1.30543 1.35768 1.03157 0.86448 0.79396 0.82737 0.78231 1.19337 1.20527 1.19295 0.91733 0.91170 0.91836 0.89199 0.91109 0.91897 0.91126 0.74579 0.82494 0.84156 0.85335 0.85642 0.85663 0.85178 0.91703 0.91551 0.78769 0.91990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.23 9.44 37.16 0.35 -0.87 16 2 C 0.14 1.30 3.42 -67.93 -0.23 1.07 16 3 C -0.18 -1.67 9.48 37.16 0.35 -1.32 16 4 N -1.12 -12.95 5.36 -4.89 -0.03 -12.97 16 5 S 2.61 37.22 5.42 -107.50 -0.58 36.64 16 6 O -0.96 -15.00 17.39 -57.54 -1.00 -16.00 16 7 O -0.94 -17.15 17.01 -57.54 -0.98 -18.12 16 8 C -0.59 -7.74 4.52 36.01 0.16 -7.58 16 9 C -0.08 -1.16 5.14 -104.63 -0.54 -1.70 16 10 C -0.11 -1.40 9.72 -39.59 -0.38 -1.78 16 11 C -0.12 -1.36 10.05 -39.58 -0.40 -1.76 16 12 C -0.11 -1.30 10.05 -39.58 -0.40 -1.70 16 13 C -0.10 -1.45 9.67 -39.58 -0.38 -1.83 16 14 C -0.07 -1.08 5.25 -104.62 -0.55 -1.63 16 15 C 0.16 3.13 4.91 -5.19 -0.03 3.10 16 16 N -0.76 -16.69 4.79 -62.90 -0.30 -16.99 16 17 C 0.55 15.36 7.75 -12.99 -0.10 15.26 16 18 O -0.58 -18.42 15.02 5.19 0.08 -18.34 16 19 C -0.55 -14.99 9.54 -35.63 -0.34 -15.33 16 20 H 0.07 1.67 7.85 -52.49 -0.41 1.26 16 21 C 0.09 2.41 5.50 -17.37 -0.10 2.32 16 22 N -0.77 -22.60 11.83 55.55 0.66 -21.94 16 23 Si 0.91 19.70 29.56 -169.99 -5.02 14.68 16 24 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 25 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 26 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.09 0.79 7.48 -51.93 -0.39 0.40 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.58 5.99 -51.93 -0.31 0.27 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.42 4.56 8.80 -34.47 -0.30 4.26 16 35 H 0.16 2.30 6.03 -51.92 -0.31 1.99 16 36 H 0.14 1.34 7.18 -51.92 -0.37 0.97 16 37 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 38 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 39 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 40 H 0.13 1.71 8.02 -52.48 -0.42 1.28 16 41 H 0.06 1.37 6.20 -51.93 -0.32 1.04 16 42 H 0.07 1.40 7.98 -51.93 -0.41 0.99 16 43 H 0.38 7.40 8.45 -40.82 -0.34 7.05 16 44 H 0.27 7.23 8.29 -40.82 -0.34 6.89 16 LS Contribution 379.30 15.07 5.72 5.72 Total: -1.00 -37.86 379.30 -10.16 -48.03 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: -6.12 Total: 13.06 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: -2.58 Total: -13.75 kcal Atomic # 7 Polarization: -52.23 SS G_CDS: 0.33 Total: -51.90 kcal Atomic # 8 Polarization: -50.56 SS G_CDS: -1.90 Total: -52.46 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.02 Total: 14.68 kcal Atomic # 16 Polarization: 37.22 SS G_CDS: -0.58 Total: 36.64 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -37.86 -10.16 -48.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274177627.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.007 kcal (2) G-P(sol) polarization free energy of solvation -37.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds