Wall clock time and date at job start Tue Mar 31 2020 23:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47254 * 2 1 4 4 N 1.46498 * 109.46830 * 119.99748 * 2 1 3 5 5 S 1.65599 * 120.00101 * 144.99985 * 4 2 1 6 6 O 1.42102 * 104.27896 * 308.92880 * 5 4 2 7 7 O 1.42101 * 104.27865 * 181.06979 * 5 4 2 8 8 C 1.81408 * 104.44792 * 64.99981 * 5 4 2 9 9 C 1.50701 * 109.46786 * 173.59404 * 8 5 4 10 10 C 1.38251 * 120.00173 * 84.69667 * 9 8 5 11 11 C 1.38213 * 120.00137 * 180.25143 * 10 9 8 12 12 C 1.38256 * 119.99703 * 359.53260 * 11 10 9 13 13 C 1.38210 * 120.00237 * 0.41937 * 12 11 10 14 14 C 1.38210 * 119.99693 * 264.66668 * 9 8 5 15 15 C 1.50702 * 120.00340 * 0.02562 * 14 9 8 16 16 N 1.46500 * 109.46901 * 281.83653 * 15 14 9 17 17 C 1.34773 * 119.99919 * 184.68988 * 16 15 14 18 18 O 1.21694 * 120.00091 * 0.02562 * 17 16 15 19 19 C 1.46378 * 120.00237 * 180.02562 * 17 16 15 20 20 H 1.07999 * 119.99470 * 0.02562 * 19 17 16 21 21 C 1.40047 * 119.99962 * 179.97438 * 19 17 16 22 22 N 1.30676 * 120.00423 * 0.02562 * 21 19 17 23 23 Si 1.86803 * 119.99660 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47354 * 60.00246 * 23 21 19 25 25 H 1.48503 * 109.46927 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47190 * 299.99999 * 23 21 19 27 27 H 1.08994 * 109.47260 * 300.00456 * 1 2 3 28 28 H 1.09003 * 109.46856 * 60.00606 * 1 2 3 29 29 H 1.09004 * 109.47091 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47260 * 239.99544 * 2 1 3 31 31 H 1.09003 * 109.47396 * 59.99316 * 3 2 1 32 32 H 1.09000 * 109.47367 * 179.97438 * 3 2 1 33 33 H 1.09004 * 109.46857 * 300.00014 * 3 2 1 34 34 H 0.97003 * 119.99833 * 325.00050 * 4 2 1 35 35 H 1.09001 * 109.47111 * 53.59520 * 8 5 4 36 36 H 1.08998 * 109.46902 * 293.59347 * 8 5 4 37 37 H 1.08000 * 119.99970 * 359.97438 * 10 9 8 38 38 H 1.08000 * 120.00232 * 179.71630 * 11 10 9 39 39 H 1.08010 * 119.99762 * 180.21459 * 12 11 10 40 40 H 1.08005 * 120.00335 * 179.78900 * 13 12 11 41 41 H 1.09003 * 109.46973 * 41.83738 * 15 14 9 42 42 H 1.09002 * 109.47378 * 161.84186 * 15 14 9 43 43 H 0.97005 * 120.00060 * 4.69444 * 16 15 14 44 44 H 0.96997 * 119.99663 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 16 3.4018 -1.5975 1.1220 6 8 3.1997 -2.4545 0.0066 7 8 3.5464 -2.1242 2.4338 8 6 4.7134 -0.3944 0.7709 9 6 6.0539 -1.0800 0.8343 10 6 6.5427 -1.7462 -0.2741 11 6 7.7699 -2.3794 -0.2144 12 6 8.5129 -2.3383 0.9508 13 6 8.0247 -1.6714 2.0586 14 6 6.7950 -1.0421 2.0003 15 6 6.2622 -0.3159 3.2086 16 7 6.4568 1.1260 3.0367 17 6 6.1411 1.9725 4.0368 18 8 5.6949 1.5391 5.0827 19 6 6.3350 3.4131 3.8649 20 1 6.7307 3.7977 2.9365 21 6 6.0065 4.2928 4.9040 22 7 5.5272 3.8274 6.0271 23 14 6.2533 6.1313 4.6843 24 1 5.4359 6.6073 3.5394 25 1 5.8320 6.8385 5.9203 26 1 7.6874 6.4100 4.4183 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.6766 1.9564 0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.5311 -0.6165 2.0317 35 1 4.6794 0.4061 1.5099 36 1 4.5658 0.0237 -0.2248 37 1 5.9637 -1.7757 -1.1853 38 1 8.1497 -2.9037 -1.0788 39 1 9.4734 -2.8302 0.9965 40 1 8.6036 -1.6422 2.9700 41 1 5.1989 -0.5282 3.3205 42 1 6.7954 -0.6509 4.0983 43 1 6.8128 1.4714 2.2031 44 1 5.3001 4.4367 6.7468 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274177627.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:20 Heat of formation + Delta-G solvation = -125.549406 kcal Electronic energy + Delta-G solvation = -28203.886236 eV Core-core repulsion = 24246.566429 eV Total energy + Delta-G solvation = -3957.319807 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.85420 -39.17095 -38.41093 -37.72893 -37.13225 -35.63927 -34.55954 -33.91372 -32.15899 -31.50271 -29.12230 -28.54323 -27.84307 -26.41150 -23.26103 -22.46076 -22.25698 -21.60868 -20.55357 -19.35821 -18.92973 -17.86832 -17.48097 -17.45371 -17.09618 -16.78182 -16.23234 -16.04936 -15.98019 -15.62199 -15.27305 -14.99124 -14.48458 -14.39212 -14.34671 -13.94215 -13.87742 -13.70204 -13.60133 -13.34734 -13.30893 -13.20660 -13.10359 -13.04729 -12.70689 -12.63910 -12.55601 -12.42439 -12.19854 -12.10925 -12.05485 -11.93462 -11.84413 -10.92403 -10.61559 -10.10963 -9.80202 -9.62029 -9.55134 -8.29058 -6.86872 -0.95937 0.25999 0.34856 1.40218 1.43325 1.55344 1.65006 2.24002 2.46117 2.55727 2.70322 3.06117 3.22324 3.34567 3.59349 3.67757 3.76459 3.83065 3.98612 4.11554 4.18604 4.22782 4.34493 4.36447 4.46433 4.56346 4.67432 4.71528 4.79851 4.85165 4.96506 4.97474 5.03341 5.20269 5.31018 5.36149 5.38460 5.40098 5.48657 5.55366 5.85072 5.95689 5.98566 6.13038 6.23825 6.85834 7.51258 8.47250 8.66190 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009062 B = 0.004459 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3089.184715 B = 6277.468302 C = 8293.016904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.129 3.871 3 C -0.185 4.185 4 N -1.114 6.114 5 S 2.614 3.386 6 O -0.973 6.973 7 O -0.994 6.994 8 C -0.581 4.581 9 C -0.093 4.093 10 C -0.116 4.116 11 C -0.111 4.111 12 C -0.106 4.106 13 C -0.117 4.117 14 C -0.094 4.094 15 C 0.163 3.837 16 N -0.745 5.745 17 C 0.537 3.463 18 O -0.630 6.630 19 C -0.570 4.570 20 H 0.089 0.911 21 C 0.030 3.970 22 N -0.821 5.821 23 Si 0.997 3.003 24 H -0.252 1.252 25 H -0.276 1.276 26 H -0.256 1.256 27 H 0.062 0.938 28 H 0.092 0.908 29 H 0.060 0.940 30 H 0.101 0.899 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.095 0.905 34 H 0.421 0.579 35 H 0.138 0.862 36 H 0.179 0.821 37 H 0.156 0.844 38 H 0.165 0.835 39 H 0.159 0.841 40 H 0.128 0.872 41 H 0.046 0.954 42 H 0.042 0.958 43 H 0.395 0.605 44 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.441 -6.685 -19.514 20.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.023 3.977 3 C -0.244 4.244 4 N -0.874 5.874 5 S 2.709 3.291 6 O -0.963 6.963 7 O -0.984 6.984 8 C -0.710 4.710 9 C -0.096 4.096 10 C -0.135 4.135 11 C -0.129 4.129 12 C -0.124 4.124 13 C -0.135 4.135 14 C -0.095 4.095 15 C 0.039 3.961 16 N -0.400 5.400 17 C 0.342 3.658 18 O -0.517 6.517 19 C -0.606 4.606 20 H 0.107 0.893 21 C -0.185 4.185 22 N -0.450 5.450 23 Si 0.816 3.184 24 H -0.175 1.175 25 H -0.201 1.201 26 H -0.180 1.180 27 H 0.081 0.919 28 H 0.111 0.889 29 H 0.079 0.921 30 H 0.119 0.881 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.113 0.887 34 H 0.256 0.744 35 H 0.156 0.844 36 H 0.196 0.804 37 H 0.173 0.827 38 H 0.183 0.817 39 H 0.176 0.824 40 H 0.146 0.854 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.229 0.771 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.755 -7.950 -18.628 20.440 hybrid contribution 0.118 1.521 0.768 1.708 sum -2.636 -6.430 -17.860 19.164 Atomic orbital electron populations 1.22061 0.92475 1.02931 1.03933 1.21148 0.97338 0.92973 0.86255 1.22539 1.01940 0.95922 1.03985 1.55633 1.42262 1.69438 1.20105 1.04763 0.75289 0.75697 0.73344 1.93539 1.84668 1.63211 1.54861 1.93569 1.86328 1.78223 1.40291 1.29712 1.10096 1.16276 1.14903 1.18935 0.94616 1.01107 0.94895 1.21512 0.97424 0.96882 0.97706 1.21623 0.93713 0.98356 0.99172 1.21610 1.01015 0.97633 0.92122 1.21330 0.94415 0.97428 1.00341 1.19875 0.96144 0.99301 0.94225 1.19852 0.99195 0.82281 0.94765 1.45857 1.71347 1.04199 1.18572 1.18683 0.77409 0.87756 0.81963 1.90580 1.51701 1.79470 1.29993 1.21354 1.46527 0.89889 1.02839 0.89310 1.26959 0.91630 1.06452 0.93456 1.70192 1.31863 1.38381 1.04565 0.85087 0.80012 0.74577 0.78715 1.17542 1.20054 1.17968 0.91876 0.88920 0.92115 0.88091 0.92493 0.92238 0.88667 0.74415 0.84381 0.80383 0.82655 0.81699 0.82353 0.85355 0.93568 0.94004 0.77144 0.91558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.24 9.44 71.98 0.68 -1.56 16 2 C 0.13 2.29 3.42 44.99 0.15 2.45 16 3 C -0.19 -3.14 9.48 71.98 0.68 -2.45 16 4 N -1.11 -26.32 5.36 -169.40 -0.91 -27.22 16 5 S 2.61 75.93 5.42 -56.49 -0.31 75.62 16 6 O -0.97 -29.72 17.39 -127.65 -2.22 -31.94 16 7 O -0.99 -38.41 17.01 -127.65 -2.17 -40.58 16 8 C -0.58 -15.02 4.52 71.24 0.32 -14.70 16 9 C -0.09 -2.60 5.14 -19.87 -0.10 -2.70 16 10 C -0.12 -2.52 9.72 22.27 0.22 -2.30 16 11 C -0.11 -2.03 10.05 22.27 0.22 -1.80 16 12 C -0.11 -2.14 10.05 22.27 0.22 -1.92 16 13 C -0.12 -3.24 9.67 22.27 0.22 -3.02 16 14 C -0.09 -3.08 5.25 -19.86 -0.10 -3.19 16 15 C 0.16 6.97 4.91 85.63 0.42 7.39 16 16 N -0.74 -33.97 4.79 -471.13 -2.26 -36.23 16 17 C 0.54 31.24 7.75 86.36 0.67 31.90 16 18 O -0.63 -42.88 15.02 -4.33 -0.07 -42.94 16 19 C -0.57 -31.80 9.54 24.83 0.24 -31.56 16 20 H 0.09 4.39 7.85 -2.91 -0.02 4.37 16 21 C 0.03 1.67 5.50 85.30 0.47 2.14 16 22 N -0.82 -50.09 11.83 21.84 0.26 -49.83 16 23 Si 1.00 40.13 29.56 68.60 2.03 42.16 16 24 H -0.25 -9.38 7.11 99.48 0.71 -8.68 16 25 H -0.28 -10.79 7.11 99.48 0.71 -10.08 16 26 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 27 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 30 H 0.10 1.58 7.48 -2.39 -0.02 1.56 16 31 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.06 1.03 5.99 -2.39 -0.01 1.01 16 33 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 34 H 0.42 9.72 8.80 -96.74 -0.85 8.87 16 35 H 0.14 4.19 6.03 -2.39 -0.01 4.18 16 36 H 0.18 3.03 7.18 -2.39 -0.02 3.01 16 37 H 0.16 2.49 8.06 -2.91 -0.02 2.47 16 38 H 0.17 1.75 8.06 -2.91 -0.02 1.73 16 39 H 0.16 2.15 8.06 -2.91 -0.02 2.12 16 40 H 0.13 3.46 8.02 -2.91 -0.02 3.44 16 41 H 0.05 2.13 6.20 -2.39 -0.01 2.11 16 42 H 0.04 1.94 7.98 -2.39 -0.02 1.92 16 43 H 0.39 15.61 8.45 -92.70 -0.78 14.83 16 44 H 0.27 15.22 8.29 -92.71 -0.77 14.45 16 Total: -1.00 -87.12 379.30 -1.93 -89.05 By element: Atomic # 1 Polarization: 43.83 SS G_CDS: -0.59 Total: 43.23 kcal Atomic # 6 Polarization: -25.64 SS G_CDS: 4.31 Total: -21.33 kcal Atomic # 7 Polarization: -110.38 SS G_CDS: -2.91 Total: -113.28 kcal Atomic # 8 Polarization: -111.00 SS G_CDS: -4.46 Total: -115.45 kcal Atomic # 14 Polarization: 40.13 SS G_CDS: 2.03 Total: 42.16 kcal Atomic # 16 Polarization: 75.93 SS G_CDS: -0.31 Total: 75.62 kcal Total: -87.12 -1.93 -89.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274177627.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.499 kcal (2) G-P(sol) polarization free energy of solvation -87.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds