Wall clock time and date at job start Wed Apr 1 2020 00:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47003 * 104.06554 * 3 2 1 5 5 C 1.36697 * 119.99932 * 264.51335 * 4 3 2 6 6 H 1.08003 * 120.00186 * 135.27913 * 5 4 3 7 7 C 1.39120 * 120.00191 * 315.27740 * 5 4 3 8 8 N 1.31324 * 120.00020 * 354.09200 * 7 5 4 9 9 Si 1.86801 * 120.00145 * 174.09523 * 7 5 4 10 10 H 1.48504 * 109.47027 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47154 * 119.99910 * 9 7 5 12 12 H 1.48501 * 109.46729 * 240.00097 * 9 7 5 13 13 C 1.34775 * 119.99845 * 84.51820 * 4 3 2 14 14 O 1.21690 * 120.00270 * 5.24402 * 13 4 3 15 15 C 1.47174 * 119.99953 * 185.25189 * 13 4 3 16 16 N 1.30588 * 120.31811 * 354.46198 * 15 13 4 17 17 N 1.39864 * 120.83586 * 180.49231 * 16 15 13 18 18 C 1.39911 * 119.60127 * 164.74229 * 17 16 15 19 19 C 1.38918 * 120.06934 * 308.43704 * 18 17 16 20 20 C 1.38099 * 119.92363 * 179.78820 * 19 18 17 21 21 C 1.38297 * 120.07437 * 0.49249 * 20 19 18 22 22 C 1.38291 * 120.14743 * 359.73630 * 21 20 19 23 23 C 1.38099 * 120.07581 * 0.02827 * 22 21 20 24 24 C 1.34820 * 120.80199 * 344.76139 * 17 16 15 25 25 O 1.21293 * 120.28580 * 179.02720 * 24 17 16 26 26 C 1.51049 * 119.42542 * 359.05243 * 24 17 16 27 27 H 1.09007 * 109.73708 * 147.02896 * 26 24 17 28 28 C 1.53004 * 109.73491 * 267.71544 * 26 24 17 29 29 N 1.39825 * 120.31901 * 174.49192 * 15 13 4 30 30 H 4.40643 * 5.51449 * 180.02562 * 4 1 2 31 31 H 1.09003 * 109.47071 * 344.06419 * 3 2 1 32 32 H 1.08998 * 109.46663 * 224.06853 * 3 2 1 33 33 H 0.96994 * 119.99981 * 179.97438 * 8 7 5 34 34 H 1.08003 * 120.03912 * 0.02562 * 19 18 17 35 35 H 1.08003 * 119.96315 * 180.25288 * 20 19 18 36 36 H 1.08002 * 119.92578 * 179.72263 * 21 20 19 37 37 H 1.08001 * 119.96347 * 179.97438 * 22 21 20 38 38 H 1.07997 * 120.03821 * 179.97438 * 23 22 21 39 39 H 1.09000 * 109.47249 * 178.66468 * 28 26 24 40 40 H 1.08999 * 109.46997 * 298.66636 * 28 26 24 41 41 H 1.09003 * 109.46795 * 58.65879 * 28 26 24 42 42 H 0.96996 * 120.92191 * 30.12101 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.3366 -1.3398 5 6 3.4692 -0.6589 -2.2147 6 1 3.1455 -0.6051 -3.2436 7 6 4.2270 -1.7415 -1.7796 8 7 4.7185 -1.7519 -0.5619 9 14 4.5456 -3.1802 -2.9277 10 1 3.8866 -2.9263 -4.2341 11 1 6.0081 -3.3357 -3.1324 12 1 3.9946 -4.4225 -2.3290 13 6 3.2531 1.6271 -1.7097 14 8 3.0468 2.5132 -0.9016 15 6 3.6322 1.9646 -3.0912 16 7 3.9596 1.0223 -3.9339 17 7 4.3315 1.3316 -5.2462 18 6 4.9773 0.3669 -6.0271 19 6 6.1003 -0.2875 -5.5370 20 6 6.7328 -1.2423 -6.3086 21 6 6.2554 -1.5399 -7.5720 22 6 5.1405 -0.8869 -8.0648 23 6 4.5003 0.0655 -7.2965 24 6 4.0756 2.5482 -5.7678 25 8 4.4179 2.8123 -6.9010 26 6 3.3594 3.5798 -4.9284 27 1 3.7183 4.5766 -5.1847 28 6 1.8523 3.4927 -5.1775 29 7 3.6459 3.2974 -3.5137 30 1 -1.0501 0.0002 0.0001 31 1 3.0098 -0.9874 0.2822 32 1 3.0089 0.7392 0.7148 33 1 5.2466 -2.5068 -0.2585 34 1 6.4761 -0.0526 -4.5521 35 1 7.6036 -1.7545 -5.9266 36 1 6.7546 -2.2839 -8.1752 37 1 4.7704 -1.1213 -9.0520 38 1 3.6299 0.5754 -7.6822 39 1 1.3379 4.2225 -4.5524 40 1 1.6448 3.7026 -6.2268 41 1 1.5006 2.4908 -4.9310 42 1 3.8394 4.0157 -2.8913 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282029333.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:54 Heat of formation + Delta-G solvation = 101.497045 kcal Electronic energy + Delta-G solvation = -30197.767419 eV Core-core repulsion = 26147.141885 eV Total energy + Delta-G solvation = -4050.625535 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.80719 -39.07722 -38.41480 -36.89824 -35.44406 -34.78458 -32.72546 -32.20996 -31.27545 -30.70902 -30.04653 -28.54418 -26.78287 -25.26605 -24.60695 -23.45533 -22.22255 -21.91288 -20.11854 -18.69075 -18.19759 -17.78007 -17.62580 -17.01470 -16.17665 -15.82190 -15.59989 -15.07115 -15.01062 -14.59531 -14.39362 -14.18984 -14.08055 -13.77194 -13.26856 -13.16810 -12.91272 -12.80942 -12.39631 -12.30882 -12.15679 -11.82094 -11.71784 -11.59744 -11.58288 -11.36200 -11.17473 -10.92553 -10.45272 -10.42041 -9.96982 -9.80152 -9.57118 -9.31257 -9.23812 -8.80961 -8.69469 -8.49899 -7.77654 -7.42088 -6.55999 -4.28284 1.43913 1.63934 1.77675 2.58750 2.69943 3.09620 3.11195 3.19383 3.29589 3.56724 3.60667 3.89443 4.00998 4.10850 4.22858 4.79707 4.85537 4.91459 5.03928 5.14753 5.15998 5.26490 5.31213 5.49286 5.59673 5.64100 5.65792 5.77748 5.89778 6.03013 6.16033 6.24897 6.44670 6.52164 6.62164 6.65162 6.69784 6.74058 6.92112 6.96194 7.23198 7.43058 7.60976 7.73865 8.04172 8.28005 8.34242 8.55461 8.87841 9.11130 9.53935 10.46670 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009531 B = 0.006145 C = 0.004160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2937.137558 B = 4555.279619 C = 6728.460312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.158 4.158 3 C 0.207 3.793 4 N -0.396 5.396 5 C -0.311 4.311 6 H 0.124 0.876 7 C 0.050 3.950 8 N -0.864 5.864 9 Si 0.918 3.082 10 H -0.259 1.259 11 H -0.275 1.275 12 H -0.280 1.280 13 C 0.518 3.482 14 O -0.589 6.589 15 C 0.335 3.665 16 N -0.234 5.234 17 N -0.411 5.411 18 C 0.174 3.826 19 C -0.106 4.106 20 C -0.111 4.111 21 C -0.130 4.130 22 C -0.112 4.112 23 C -0.109 4.109 24 C 0.483 3.517 25 O -0.528 6.528 26 C 0.146 3.854 27 H 0.122 0.878 28 C -0.163 4.163 29 N -0.748 5.748 30 H 0.208 0.792 31 H 0.140 0.860 32 H 0.087 0.913 33 H 0.275 0.725 34 H 0.130 0.870 35 H 0.125 0.875 36 H 0.121 0.879 37 H 0.123 0.877 38 H 0.121 0.879 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.062 0.938 42 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.703 2.286 -7.925 8.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.267 4.267 2 C -0.159 4.159 3 C 0.086 3.914 4 N -0.112 5.112 5 C -0.441 4.441 6 H 0.140 0.860 7 C -0.157 4.157 8 N -0.501 5.501 9 Si 0.743 3.257 10 H -0.183 1.183 11 H -0.201 1.201 12 H -0.206 1.206 13 C 0.304 3.696 14 O -0.474 6.474 15 C 0.057 3.943 16 N -0.056 5.056 17 N -0.222 5.222 18 C 0.083 3.917 19 C -0.126 4.126 20 C -0.130 4.130 21 C -0.148 4.148 22 C -0.130 4.130 23 C -0.129 4.129 24 C 0.270 3.730 25 O -0.400 6.400 26 C 0.036 3.964 27 H 0.139 0.861 28 C -0.222 4.222 29 N -0.397 5.397 30 H 0.225 0.775 31 H 0.157 0.843 32 H 0.105 0.895 33 H 0.085 0.915 34 H 0.148 0.852 35 H 0.142 0.858 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.096 0.904 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -0.410 1.842 -8.304 8.516 hybrid contribution -0.046 0.302 -0.223 0.378 sum -0.456 2.144 -8.527 8.805 Atomic orbital electron populations 1.24621 0.95645 1.04744 1.01658 1.24225 0.95351 0.97382 0.98970 1.18716 0.81543 1.05479 0.85694 1.43231 1.51554 1.03741 1.12640 1.20266 1.30542 0.99390 0.93915 0.85953 1.25529 0.94179 0.99566 0.96403 1.69675 1.31804 1.31588 1.17018 0.85958 0.78823 0.80040 0.80852 1.18307 1.20085 1.20638 1.17399 0.83670 0.84191 0.84330 1.90721 1.57726 1.47625 1.51280 1.23503 0.94522 0.81446 0.94863 1.77343 1.18995 1.21097 0.88134 1.46640 1.54154 1.10775 1.10590 1.17312 0.92237 0.91634 0.90533 1.21161 0.93806 0.97087 1.00571 1.21003 1.00119 0.97535 0.94343 1.21105 0.97254 1.00391 0.96090 1.20896 0.96186 0.96385 0.99556 1.21002 1.00150 0.97749 0.94021 1.21781 0.80254 0.83149 0.87845 1.90713 1.51871 1.78771 1.18689 1.21333 0.96203 0.98345 0.80484 0.86070 1.22219 0.93501 1.03771 1.02719 1.45147 1.79868 1.06073 1.08596 0.77477 0.84308 0.89540 0.91480 0.85247 0.85752 0.86108 0.85872 0.86101 0.90363 0.90859 0.91858 0.74777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -4.58 19.25 29.55 0.57 -4.01 16 2 C -0.16 -3.36 13.62 -37.12 -0.51 -3.86 16 3 C 0.21 4.68 5.36 -6.83 -0.04 4.64 16 4 N -0.40 -9.38 2.46 -119.27 -0.29 -9.67 16 5 C -0.31 -7.47 7.69 -15.06 -0.12 -7.59 16 6 H 0.12 3.01 5.75 -52.48 -0.30 2.71 16 7 C 0.05 1.19 5.21 -17.44 -0.09 1.10 16 8 N -0.86 -21.00 11.16 55.50 0.62 -20.38 16 9 Si 0.92 19.28 29.56 -169.99 -5.02 14.26 16 10 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 11 H -0.28 -5.72 7.11 56.52 0.40 -5.31 16 12 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 13 C 0.52 11.95 7.56 -12.63 -0.10 11.86 16 14 O -0.59 -14.20 16.42 5.20 0.09 -14.12 16 15 C 0.34 6.85 7.36 -152.43 -1.12 5.73 16 16 N -0.23 -4.89 7.25 32.77 0.24 -4.66 16 17 N -0.41 -7.99 3.58 -9.72 -0.03 -8.02 16 18 C 0.17 3.28 5.56 -83.67 -0.46 2.81 16 19 C -0.11 -1.91 9.77 -39.38 -0.38 -2.30 16 20 C -0.11 -1.69 10.04 -39.61 -0.40 -2.09 16 21 C -0.13 -1.77 10.04 -39.54 -0.40 -2.17 16 22 C -0.11 -1.58 10.04 -39.61 -0.40 -1.98 16 23 C -0.11 -1.84 8.74 -39.38 -0.34 -2.18 16 24 C 0.48 8.70 6.76 -10.79 -0.07 8.63 16 25 O -0.53 -10.20 15.90 5.55 0.09 -10.12 16 26 C 0.15 2.14 3.88 -68.60 -0.27 1.88 16 27 H 0.12 1.44 8.14 -51.93 -0.42 1.02 16 28 C -0.16 -2.14 9.40 37.16 0.35 -1.79 16 29 N -0.75 -12.42 5.43 -52.33 -0.28 -12.71 16 30 H 0.21 2.88 7.80 -54.09 -0.42 2.46 16 31 H 0.14 3.25 5.57 -51.93 -0.29 2.96 16 32 H 0.09 1.94 7.52 -51.93 -0.39 1.55 16 33 H 0.27 6.31 8.31 -40.82 -0.34 5.97 16 34 H 0.13 2.43 8.06 -52.48 -0.42 2.01 16 35 H 0.12 1.60 8.06 -52.48 -0.42 1.18 16 36 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 37 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 38 H 0.12 2.00 7.60 -52.49 -0.40 1.60 16 39 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.06 0.97 8.08 -51.93 -0.42 0.55 16 42 H 0.41 6.26 8.75 -40.82 -0.36 5.90 16 LS Contribution 369.38 15.07 5.57 5.57 Total: -1.00 -28.96 369.38 -7.49 -36.45 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: -4.67 Total: 14.72 kcal Atomic # 6 Polarization: 12.46 SS G_CDS: -3.77 Total: 8.68 kcal Atomic # 7 Polarization: -55.68 SS G_CDS: 0.24 Total: -55.44 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: 0.17 Total: -24.24 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.02 Total: 14.26 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -28.96 -7.49 -36.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282029333.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.944 kcal (2) G-P(sol) polarization free energy of solvation -28.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds