Wall clock time and date at job start Wed Apr 1 2020 00:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47003 * 104.06554 * 3 2 1 5 5 C 1.36697 * 119.99932 * 264.51335 * 4 3 2 6 6 H 1.08003 * 120.00186 * 135.27913 * 5 4 3 7 7 C 1.39120 * 120.00191 * 315.27740 * 5 4 3 8 8 N 1.31324 * 120.00020 * 354.09200 * 7 5 4 9 9 Si 1.86801 * 120.00145 * 174.09523 * 7 5 4 10 10 H 1.48504 * 109.47027 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47154 * 119.99910 * 9 7 5 12 12 H 1.48501 * 109.46729 * 240.00097 * 9 7 5 13 13 C 1.34775 * 119.99845 * 84.51820 * 4 3 2 14 14 O 1.21690 * 120.00270 * 5.24402 * 13 4 3 15 15 C 1.47174 * 119.99953 * 185.25189 * 13 4 3 16 16 N 1.30588 * 120.31811 * 354.46198 * 15 13 4 17 17 N 1.39864 * 120.83586 * 180.49231 * 16 15 13 18 18 C 1.39911 * 119.60127 * 164.74229 * 17 16 15 19 19 C 1.38918 * 120.06934 * 308.43704 * 18 17 16 20 20 C 1.38099 * 119.92363 * 179.78820 * 19 18 17 21 21 C 1.38297 * 120.07437 * 0.49249 * 20 19 18 22 22 C 1.38291 * 120.14743 * 359.73630 * 21 20 19 23 23 C 1.38099 * 120.07581 * 0.02827 * 22 21 20 24 24 C 1.34820 * 120.80199 * 344.76139 * 17 16 15 25 25 O 1.21293 * 120.28580 * 179.02720 * 24 17 16 26 26 C 1.51049 * 119.42542 * 359.05243 * 24 17 16 27 27 H 1.09007 * 109.73708 * 147.02896 * 26 24 17 28 28 C 1.53004 * 109.73491 * 267.71544 * 26 24 17 29 29 N 1.39825 * 120.31901 * 174.49192 * 15 13 4 30 30 H 4.40643 * 5.51449 * 180.02562 * 4 1 2 31 31 H 1.09003 * 109.47071 * 344.06419 * 3 2 1 32 32 H 1.08998 * 109.46663 * 224.06853 * 3 2 1 33 33 H 0.96994 * 119.99981 * 179.97438 * 8 7 5 34 34 H 1.08003 * 120.03912 * 0.02562 * 19 18 17 35 35 H 1.08003 * 119.96315 * 180.25288 * 20 19 18 36 36 H 1.08002 * 119.92578 * 179.72263 * 21 20 19 37 37 H 1.08001 * 119.96347 * 179.97438 * 22 21 20 38 38 H 1.07997 * 120.03821 * 179.97438 * 23 22 21 39 39 H 1.09000 * 109.47249 * 178.66468 * 28 26 24 40 40 H 1.08999 * 109.46997 * 298.66636 * 28 26 24 41 41 H 1.09003 * 109.46795 * 58.65879 * 28 26 24 42 42 H 0.96996 * 120.92191 * 30.12101 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.3366 -1.3398 5 6 3.4692 -0.6589 -2.2147 6 1 3.1455 -0.6051 -3.2436 7 6 4.2270 -1.7415 -1.7796 8 7 4.7185 -1.7519 -0.5619 9 14 4.5456 -3.1802 -2.9277 10 1 3.8866 -2.9263 -4.2341 11 1 6.0081 -3.3357 -3.1324 12 1 3.9946 -4.4225 -2.3290 13 6 3.2531 1.6271 -1.7097 14 8 3.0468 2.5132 -0.9016 15 6 3.6322 1.9646 -3.0912 16 7 3.9596 1.0223 -3.9339 17 7 4.3315 1.3316 -5.2462 18 6 4.9773 0.3669 -6.0271 19 6 6.1003 -0.2875 -5.5370 20 6 6.7328 -1.2423 -6.3086 21 6 6.2554 -1.5399 -7.5720 22 6 5.1405 -0.8869 -8.0648 23 6 4.5003 0.0655 -7.2965 24 6 4.0756 2.5482 -5.7678 25 8 4.4179 2.8123 -6.9010 26 6 3.3594 3.5798 -4.9284 27 1 3.7183 4.5766 -5.1847 28 6 1.8523 3.4927 -5.1775 29 7 3.6459 3.2974 -3.5137 30 1 -1.0501 0.0002 0.0001 31 1 3.0098 -0.9874 0.2822 32 1 3.0089 0.7392 0.7148 33 1 5.2466 -2.5068 -0.2585 34 1 6.4761 -0.0526 -4.5521 35 1 7.6036 -1.7545 -5.9266 36 1 6.7546 -2.2839 -8.1752 37 1 4.7704 -1.1213 -9.0520 38 1 3.6299 0.5754 -7.6822 39 1 1.3379 4.2225 -4.5524 40 1 1.6448 3.7026 -6.2268 41 1 1.5006 2.4908 -4.9310 42 1 3.8394 4.0157 -2.8913 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282029333.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:53 Heat of formation + Delta-G solvation = 85.705260 kcal Electronic energy + Delta-G solvation = -30198.452203 eV Core-core repulsion = 26147.141885 eV Total energy + Delta-G solvation = -4051.310318 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.21774 -40.75353 -39.70679 -38.40387 -37.17768 -36.18332 -34.33282 -33.79765 -32.89824 -31.92080 -31.34764 -29.87686 -28.45221 -27.04499 -25.86622 -24.99242 -23.52111 -23.15975 -21.71239 -20.34836 -19.70402 -19.21262 -19.04953 -18.44893 -17.73788 -17.14856 -17.02282 -16.73525 -16.64271 -16.17919 -15.75197 -15.69559 -15.51806 -15.01458 -14.86965 -14.49902 -14.39497 -14.10904 -13.90852 -13.69789 -13.46833 -13.35386 -13.32496 -13.08087 -12.93806 -12.86275 -12.64251 -12.19805 -12.11276 -11.92562 -11.48391 -11.36226 -11.23093 -10.96479 -10.80379 -10.49227 -9.92075 -9.82111 -9.59095 -8.83686 -8.36810 -6.14698 0.16030 0.22024 0.41764 1.17862 1.27013 1.43297 1.44745 1.54114 1.64852 2.03106 2.09409 2.27916 2.38710 2.60958 2.91358 3.05027 3.30349 3.74387 3.75329 3.85827 3.96458 4.00609 4.07101 4.22837 4.39398 4.44867 4.49024 4.57656 4.58216 4.70329 4.78496 5.01776 5.04476 5.13295 5.17861 5.20880 5.35213 5.47117 5.53145 5.60600 5.62076 5.82115 6.01383 6.39989 6.42156 6.68359 6.78458 6.93923 7.12378 7.33910 7.72653 8.66827 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009531 B = 0.006145 C = 0.004160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2937.137558 B = 4555.279619 C = 6728.460312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.224 4.224 3 C 0.213 3.787 4 N -0.405 5.405 5 C -0.318 4.318 6 H 0.115 0.885 7 C 0.018 3.982 8 N -0.888 5.888 9 Si 0.967 3.033 10 H -0.266 1.266 11 H -0.270 1.270 12 H -0.275 1.275 13 C 0.512 3.488 14 O -0.606 6.606 15 C 0.330 3.670 16 N -0.249 5.249 17 N -0.415 5.415 18 C 0.139 3.861 19 C -0.130 4.130 20 C -0.115 4.115 21 C -0.119 4.119 22 C -0.105 4.105 23 C -0.123 4.123 24 C 0.477 3.523 25 O -0.544 6.544 26 C 0.147 3.853 27 H 0.158 0.842 28 C -0.155 4.155 29 N -0.738 5.738 30 H 0.255 0.745 31 H 0.125 0.875 32 H 0.074 0.926 33 H 0.277 0.723 34 H 0.107 0.893 35 H 0.146 0.854 36 H 0.163 0.837 37 H 0.159 0.841 38 H 0.117 0.883 39 H 0.098 0.902 40 H 0.091 0.909 41 H 0.036 0.964 42 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.378 1.937 -10.108 10.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.225 4.225 3 C 0.091 3.909 4 N -0.121 5.121 5 C -0.448 4.448 6 H 0.132 0.868 7 C -0.186 4.186 8 N -0.526 5.526 9 Si 0.791 3.209 10 H -0.190 1.190 11 H -0.195 1.195 12 H -0.200 1.200 13 C 0.298 3.702 14 O -0.492 6.492 15 C 0.050 3.950 16 N -0.072 5.072 17 N -0.226 5.226 18 C 0.048 3.952 19 C -0.151 4.151 20 C -0.133 4.133 21 C -0.137 4.137 22 C -0.124 4.124 23 C -0.144 4.144 24 C 0.264 3.736 25 O -0.418 6.418 26 C 0.039 3.961 27 H 0.175 0.825 28 C -0.214 4.214 29 N -0.387 5.387 30 H 0.272 0.728 31 H 0.143 0.857 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.125 0.875 35 H 0.164 0.836 36 H 0.180 0.820 37 H 0.177 0.823 38 H 0.135 0.865 39 H 0.117 0.883 40 H 0.110 0.890 41 H 0.055 0.945 42 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -1.086 1.498 -10.479 10.641 hybrid contribution 0.134 0.443 0.377 0.597 sum -0.952 1.941 -10.102 10.330 Atomic orbital electron populations 1.25638 0.96450 1.01324 0.98381 1.24231 0.95765 1.00489 1.02020 1.18450 0.83114 1.04207 0.85114 1.43398 1.51788 1.04002 1.12957 1.20234 1.31049 0.99782 0.93737 0.86768 1.26095 0.93962 1.01135 0.97380 1.69755 1.32561 1.32293 1.18004 0.85232 0.78757 0.77884 0.79044 1.18979 1.19528 1.20046 1.17730 0.83202 0.83919 0.85348 1.90682 1.58409 1.47929 1.52176 1.23072 0.95005 0.83087 0.93823 1.77186 1.18882 1.21988 0.89128 1.46671 1.54316 1.11674 1.09953 1.17698 0.93190 0.92725 0.91547 1.21168 0.94677 0.98847 1.00367 1.21350 1.00483 0.96611 0.94881 1.21581 0.96547 1.00162 0.95449 1.21355 0.95702 0.94748 1.00547 1.21155 1.00629 0.98872 0.93743 1.22349 0.80019 0.83168 0.88034 1.90689 1.52670 1.78993 1.19418 1.21647 0.97029 0.98839 0.78571 0.82486 1.22188 0.92108 1.02777 1.04336 1.45176 1.79174 1.04775 1.09622 0.72847 0.85740 0.90773 0.91265 0.87475 0.83581 0.81965 0.82310 0.86489 0.88335 0.89000 0.94510 0.73878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -7.01 19.25 74.32 1.43 -5.58 16 2 C -0.22 -9.61 13.62 31.13 0.42 -9.19 16 3 C 0.21 10.07 5.36 84.58 0.45 10.52 16 4 N -0.41 -20.03 2.46 -649.47 -1.60 -21.63 16 5 C -0.32 -15.87 7.69 84.15 0.65 -15.23 16 6 H 0.12 5.85 5.75 -2.91 -0.02 5.83 16 7 C 0.02 0.90 5.21 84.98 0.44 1.34 16 8 N -0.89 -44.71 11.16 21.69 0.24 -44.46 16 9 Si 0.97 40.09 29.56 68.60 2.03 42.12 16 10 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 11 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 12 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 13 C 0.51 24.43 7.56 86.59 0.65 25.09 16 14 O -0.61 -30.07 16.42 -4.32 -0.07 -30.14 16 15 C 0.33 13.83 7.36 135.44 1.00 14.83 16 16 N -0.25 -10.78 7.25 -50.24 -0.36 -11.14 16 17 N -0.41 -16.48 3.58 -303.03 -1.08 -17.56 16 18 C 0.14 5.31 5.56 38.18 0.21 5.52 16 19 C -0.13 -4.76 9.77 22.40 0.22 -4.54 16 20 C -0.11 -3.30 10.04 22.25 0.22 -3.08 16 21 C -0.12 -2.85 10.04 22.30 0.22 -2.63 16 22 C -0.11 -2.69 10.04 22.25 0.22 -2.47 16 23 C -0.12 -4.08 8.74 22.40 0.20 -3.89 16 24 C 0.48 17.10 6.76 87.76 0.59 17.69 16 25 O -0.54 -20.78 15.90 -3.07 -0.05 -20.83 16 26 C 0.15 4.16 3.88 44.25 0.17 4.33 16 27 H 0.16 3.33 8.14 -2.38 -0.02 3.31 16 28 C -0.15 -3.84 9.40 71.98 0.68 -3.16 16 29 N -0.74 -24.37 5.43 -319.47 -1.73 -26.10 16 30 H 0.26 5.98 7.80 -4.41 -0.03 5.94 16 31 H 0.13 6.16 5.57 -2.39 -0.01 6.15 16 32 H 0.07 3.55 7.52 -2.39 -0.02 3.53 16 33 H 0.28 13.10 8.31 -92.71 -0.77 12.33 16 34 H 0.11 4.26 8.06 -2.91 -0.02 4.24 16 35 H 0.15 3.45 8.06 -2.91 -0.02 3.42 16 36 H 0.16 2.54 8.06 -2.91 -0.02 2.52 16 37 H 0.16 2.87 8.06 -2.91 -0.02 2.85 16 38 H 0.12 3.84 7.60 -2.91 -0.02 3.82 16 39 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.04 1.10 8.08 -2.39 -0.02 1.09 16 42 H 0.42 12.55 8.75 -92.71 -0.81 11.74 16 Total: -1.00 -65.84 369.38 5.42 -60.42 By element: Atomic # 1 Polarization: 39.50 SS G_CDS: 0.26 Total: 39.77 kcal Atomic # 6 Polarization: 21.77 SS G_CDS: 7.79 Total: 29.56 kcal Atomic # 7 Polarization: -116.36 SS G_CDS: -4.54 Total: -120.90 kcal Atomic # 8 Polarization: -50.85 SS G_CDS: -0.12 Total: -50.97 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 2.03 Total: 42.12 kcal Total: -65.84 5.42 -60.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282029333.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.125 kcal (2) G-P(sol) polarization free energy of solvation -65.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds