Wall clock time and date at job start Wed Apr 1 2020 00:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47089 * 2 1 4 4 C 1.50701 * 109.47016 * 119.99487 * 2 1 3 5 5 H 1.08010 * 119.99581 * 114.54235 * 4 2 1 6 6 C 1.37868 * 120.00474 * 294.54736 * 4 2 1 7 7 N 1.31514 * 119.99919 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00368 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47235 * 89.99617 * 8 6 4 10 10 H 1.48493 * 109.47421 * 209.99741 * 8 6 4 11 11 H 1.48504 * 109.46785 * 329.99703 * 8 6 4 12 12 N 1.46503 * 109.47473 * 239.99910 * 2 1 3 13 13 C 1.46493 * 119.99654 * 295.50412 * 12 2 1 14 14 S 1.65595 * 119.99913 * 115.50504 * 12 2 1 15 15 O 1.42101 * 106.40251 * 342.11865 * 14 12 2 16 16 O 1.42108 * 106.39970 * 209.20614 * 14 12 2 17 17 N 1.65593 * 107.22122 * 95.66668 * 14 12 2 18 18 C 1.46510 * 119.99777 * 293.75383 * 17 14 12 19 19 H 1.09004 * 110.85540 * 22.20725 * 18 17 14 20 20 C 1.51642 * 110.93832 * 258.47303 * 18 17 14 21 21 C 1.37738 * 132.17802 * 46.44485 * 20 18 17 22 22 C 1.38358 * 119.97653 * 180.35574 * 21 20 18 23 23 C 1.38277 * 119.76992 * 0.02822 * 22 21 20 24 24 C 1.37935 * 120.34994 * 359.79323 * 23 22 21 25 25 C 1.38885 * 107.03730 * 226.46165 * 20 18 17 26 26 O 1.36133 * 111.23799 * 358.92513 * 25 20 18 27 27 C 1.43775 * 109.23806 * 19.01992 * 26 25 20 28 28 H 1.08996 * 110.90241 * 90.65529 * 27 26 25 29 29 C 1.53002 * 110.74957 * 213.93688 * 27 26 25 30 30 H 1.08996 * 109.47001 * 60.00681 * 1 2 3 31 31 H 1.09008 * 109.46703 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47346 * 299.99788 * 1 2 3 33 33 H 0.96996 * 120.00094 * 179.97438 * 7 6 4 34 34 H 1.09004 * 109.47697 * 269.99796 * 13 12 2 35 35 H 1.08999 * 109.48123 * 30.00087 * 13 12 2 36 36 H 1.09000 * 109.47308 * 150.00082 * 13 12 2 37 37 H 0.96995 * 120.00626 * 113.75509 * 17 14 12 38 38 H 1.08002 * 120.01399 * 0.35293 * 21 20 18 39 39 H 1.07998 * 120.11390 * 180.02562 * 22 21 20 40 40 H 1.08005 * 119.82775 * 179.81919 * 23 22 21 41 41 H 1.07996 * 119.88392 * 180.02562 * 24 23 22 42 42 H 1.09001 * 109.46916 * 173.36800 * 29 27 26 43 43 H 1.08994 * 109.47388 * 53.36406 * 29 27 26 44 44 H 1.09004 * 109.46372 * 293.36757 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.5786 -1.6370 1.1339 6 6 1.7945 -0.1774 2.4796 7 7 1.1296 0.9512 2.5972 8 14 2.4165 -1.0582 4.0049 9 1 3.7824 -0.5762 4.3325 10 1 1.5063 -0.7780 5.1442 11 1 2.4554 -2.5208 3.7506 12 7 2.0184 -0.6906 -1.1962 13 6 1.7476 -2.1186 -1.3793 14 16 2.8766 0.1429 -2.3411 15 8 2.6172 1.5212 -2.1124 16 8 2.6206 -0.5007 -3.5819 17 7 4.4834 -0.0908 -2.0159 18 6 5.0690 0.4535 -0.7882 19 1 4.3002 0.6271 -0.0353 20 6 5.8439 1.7251 -1.0749 21 6 5.5407 2.8455 -1.8165 22 6 6.4569 3.8775 -1.9158 23 6 7.6752 3.7787 -1.2692 24 6 7.9793 2.6592 -0.5230 25 6 7.0611 1.6175 -0.4147 26 8 7.1464 0.4467 0.2745 27 6 6.1761 -0.4795 -0.2429 28 1 6.6028 -1.0821 -1.0447 29 6 5.6309 -1.3731 0.8729 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 0.9619 1.3260 3.4760 34 1 2.5548 -2.7015 -0.9357 35 1 0.8056 -2.3750 -0.8945 36 1 1.6808 -2.3421 -2.4440 37 1 5.0369 -0.5880 -2.6381 38 1 4.5882 2.9184 -2.3204 39 1 6.2213 4.7572 -2.4964 40 1 8.3922 4.5825 -1.3485 41 1 8.9329 2.5901 -0.0207 42 1 4.8162 -1.9839 0.4838 43 1 5.2615 -0.7515 1.6885 44 1 6.4267 -2.0206 1.2413 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000288628699.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:02:48 Heat of formation + Delta-G solvation = -77.240615 kcal Electronic energy + Delta-G solvation = -29711.219415 eV Core-core repulsion = 25755.994434 eV Total energy + Delta-G solvation = -3955.224981 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.11319 -37.38305 -36.79569 -36.22486 -35.33764 -35.12184 -32.64523 -31.24841 -30.67214 -29.57654 -29.20327 -25.81000 -25.57506 -25.22486 -22.37444 -21.64375 -21.40447 -20.83424 -19.03600 -17.56992 -17.27840 -16.81933 -16.71736 -16.44679 -16.04485 -15.44502 -15.01723 -14.63281 -14.24885 -13.87448 -13.62587 -13.49362 -13.39725 -13.13392 -12.91957 -12.83181 -12.29278 -12.15711 -11.97758 -11.85720 -11.78564 -11.64607 -11.56392 -11.46065 -11.22286 -11.17114 -11.06476 -10.92464 -10.83813 -10.66088 -10.51464 -10.35932 -10.09232 -9.44813 -9.20666 -8.77479 -8.56201 -8.08014 -8.02061 -6.16978 -4.25157 1.09214 1.44397 1.53412 3.19687 3.22998 3.28561 3.28977 3.44460 3.87106 4.04612 4.29034 4.52883 4.61509 4.85817 5.02862 5.10505 5.15524 5.17424 5.31927 5.36580 5.45092 5.55954 5.65940 5.76250 5.93357 5.97140 6.07314 6.12594 6.24254 6.27890 6.43172 6.48355 6.56914 6.58971 6.66269 6.74537 6.77179 6.79042 7.02369 7.10193 7.33065 7.41457 7.54946 7.70362 7.91718 8.17410 8.78867 9.41794 10.89366 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010287 B = 0.005951 C = 0.004696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2721.360662 B = 4703.793941 C = 5961.464923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.264 3.736 3 H 0.064 0.936 4 C -0.528 4.528 5 H 0.065 0.935 6 C 0.068 3.932 7 N -0.883 5.883 8 Si 0.888 3.112 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.273 1.273 12 N -0.989 5.989 13 C 0.101 3.899 14 S 2.778 3.222 15 O -0.974 6.974 16 O -0.997 6.997 17 N -1.117 6.117 18 C 0.173 3.827 19 H 0.135 0.865 20 C -0.182 4.182 21 C -0.053 4.053 22 C -0.155 4.155 23 C -0.086 4.086 24 C -0.147 4.147 25 C 0.111 3.889 26 O -0.299 6.299 27 C 0.080 3.920 28 H 0.087 0.913 29 C -0.150 4.150 30 H 0.013 0.987 31 H 0.034 0.966 32 H 0.084 0.916 33 H 0.265 0.735 34 H 0.043 0.957 35 H 0.076 0.924 36 H 0.059 0.941 37 H 0.409 0.591 38 H 0.135 0.865 39 H 0.126 0.874 40 H 0.127 0.873 41 H 0.125 0.875 42 H 0.088 0.912 43 H 0.078 0.922 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.148 -1.187 -6.632 12.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.162 3.838 3 H 0.081 0.919 4 C -0.567 4.567 5 H 0.083 0.917 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.715 3.285 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.198 1.198 12 N -0.832 5.832 13 C -0.046 4.046 14 S 2.787 3.213 15 O -0.957 6.957 16 O -0.981 6.981 17 N -0.873 5.873 18 C 0.065 3.935 19 H 0.152 0.848 20 C -0.185 4.185 21 C -0.071 4.071 22 C -0.173 4.173 23 C -0.104 4.104 24 C -0.166 4.166 25 C 0.065 3.935 26 O -0.213 6.213 27 C 0.023 3.977 28 H 0.105 0.895 29 C -0.207 4.207 30 H 0.032 0.968 31 H 0.053 0.947 32 H 0.102 0.898 33 H 0.075 0.925 34 H 0.062 0.938 35 H 0.095 0.905 36 H 0.078 0.922 37 H 0.242 0.758 38 H 0.153 0.847 39 H 0.144 0.856 40 H 0.145 0.855 41 H 0.143 0.857 42 H 0.107 0.893 43 H 0.097 0.903 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.723 -0.517 -6.897 11.932 hybrid contribution 0.555 -0.910 0.993 1.457 sum 10.278 -1.428 -5.904 11.939 Atomic orbital electron populations 1.22027 0.98272 0.99500 1.00384 1.18804 0.91647 0.93077 0.80321 0.91855 1.21322 1.36403 1.08909 0.90070 0.91667 1.24909 0.94953 0.94818 0.98886 1.69904 1.39405 1.18591 1.24149 0.86667 0.78929 0.80063 0.82825 1.20388 1.21203 1.19770 1.57694 1.68021 1.18974 1.38550 1.21248 1.02208 0.81017 1.00115 1.01985 0.72503 0.73937 0.72896 1.93587 1.83908 1.32316 1.85886 1.93552 1.84200 1.77518 1.42852 1.56132 1.29948 1.70405 1.30827 1.20960 0.97001 0.88548 0.86959 0.84794 1.21144 0.95495 0.98511 1.03327 1.20613 0.99527 0.91096 0.95877 1.21053 0.94470 0.99210 1.02607 1.20832 0.96930 0.96580 0.96046 1.20179 0.98982 0.93422 1.03995 1.19540 0.93607 0.88036 0.92331 1.86879 1.58116 1.21626 1.54711 1.23643 0.86477 0.90349 0.97262 0.89481 1.21943 1.01213 0.99320 0.98209 0.96754 0.94709 0.89752 0.92543 0.93798 0.90516 0.92245 0.75844 0.84685 0.85626 0.85477 0.85748 0.89290 0.90271 0.91846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 9.08 37.16 0.34 -2.87 16 2 C 0.26 6.01 2.25 -69.08 -0.16 5.85 16 3 H 0.06 1.62 6.85 -51.93 -0.36 1.27 16 4 C -0.53 -12.37 8.30 -34.44 -0.29 -12.66 16 5 H 0.07 1.46 7.10 -52.48 -0.37 1.08 16 6 C 0.07 1.69 5.32 -17.82 -0.09 1.59 16 7 N -0.88 -23.37 11.73 55.43 0.65 -22.72 16 8 Si 0.89 19.45 29.54 -169.99 -5.02 14.43 16 9 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 10 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 12 N -0.99 -18.98 3.12 -115.86 -0.36 -19.34 16 13 C 0.10 1.65 9.69 59.84 0.58 2.23 16 14 S 2.78 51.38 6.08 -107.50 -0.65 50.73 16 15 O -0.97 -20.83 15.10 -57.17 -0.86 -21.69 16 16 O -1.00 -19.53 16.86 -57.17 -0.96 -20.49 16 17 N -1.12 -16.93 5.65 -4.70 -0.03 -16.96 16 18 C 0.17 2.86 3.20 -67.71 -0.22 2.64 16 19 H 0.13 2.59 7.54 -51.93 -0.39 2.20 16 20 C -0.18 -3.04 5.93 -104.10 -0.62 -3.65 16 21 C -0.05 -0.85 10.03 -39.72 -0.40 -1.25 16 22 C -0.16 -2.07 10.07 -39.52 -0.40 -2.47 16 23 C -0.09 -1.04 10.02 -39.68 -0.40 -1.44 16 24 C -0.15 -1.99 10.06 -39.30 -0.40 -2.38 16 25 C 0.11 1.76 7.04 -38.95 -0.27 1.49 16 26 O -0.30 -4.80 10.81 -20.16 -0.22 -5.02 16 27 C 0.08 1.16 3.98 -25.83 -0.10 1.06 16 28 H 0.09 1.05 7.91 -51.93 -0.41 0.64 16 29 C -0.15 -2.15 9.58 37.16 0.36 -1.79 16 30 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.03 0.72 6.84 -51.92 -0.36 0.37 16 32 H 0.08 2.08 6.52 -51.93 -0.34 1.74 16 33 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 34 H 0.04 0.64 7.99 -51.93 -0.41 0.23 16 35 H 0.08 1.26 6.67 -51.93 -0.35 0.92 16 36 H 0.06 0.90 7.08 -51.93 -0.37 0.53 16 37 H 0.41 5.01 8.71 -34.47 -0.30 4.71 16 38 H 0.14 2.29 6.80 -52.49 -0.36 1.94 16 39 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 40 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 41 H 0.12 1.42 8.06 -52.49 -0.42 0.99 16 42 H 0.09 1.25 7.98 -51.93 -0.41 0.83 16 43 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 369.65 15.07 5.57 5.57 Total: -1.00 -29.60 369.65 -10.05 -39.65 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -6.10 Total: 9.52 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: -2.06 Total: -13.67 kcal Atomic # 7 Polarization: -59.28 SS G_CDS: 0.26 Total: -59.02 kcal Atomic # 8 Polarization: -45.16 SS G_CDS: -2.05 Total: -47.21 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.02 Total: 14.43 kcal Atomic # 16 Polarization: 51.38 SS G_CDS: -0.65 Total: 50.73 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.60 -10.05 -39.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288628699.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.591 kcal (2) G-P(sol) polarization free energy of solvation -29.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds