Wall clock time and date at job start Wed Apr 1 2020 00:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47089 * 2 1 4 4 C 1.50701 * 109.47016 * 119.99487 * 2 1 3 5 5 H 1.08010 * 119.99581 * 114.54235 * 4 2 1 6 6 C 1.37868 * 120.00474 * 294.54736 * 4 2 1 7 7 N 1.31514 * 119.99919 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00368 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47235 * 89.99617 * 8 6 4 10 10 H 1.48493 * 109.47421 * 209.99741 * 8 6 4 11 11 H 1.48504 * 109.46785 * 329.99703 * 8 6 4 12 12 N 1.46503 * 109.47473 * 239.99910 * 2 1 3 13 13 C 1.46493 * 119.99654 * 295.50412 * 12 2 1 14 14 S 1.65595 * 119.99913 * 115.50504 * 12 2 1 15 15 O 1.42101 * 106.40251 * 342.11865 * 14 12 2 16 16 O 1.42108 * 106.39970 * 209.20614 * 14 12 2 17 17 N 1.65593 * 107.22122 * 95.66668 * 14 12 2 18 18 C 1.46510 * 119.99777 * 293.75383 * 17 14 12 19 19 H 1.09004 * 110.85540 * 22.20725 * 18 17 14 20 20 C 1.51642 * 110.93832 * 258.47303 * 18 17 14 21 21 C 1.37738 * 132.17802 * 46.44485 * 20 18 17 22 22 C 1.38358 * 119.97653 * 180.35574 * 21 20 18 23 23 C 1.38277 * 119.76992 * 0.02822 * 22 21 20 24 24 C 1.37935 * 120.34994 * 359.79323 * 23 22 21 25 25 C 1.38885 * 107.03730 * 226.46165 * 20 18 17 26 26 O 1.36133 * 111.23799 * 358.92513 * 25 20 18 27 27 C 1.43775 * 109.23806 * 19.01992 * 26 25 20 28 28 H 1.08996 * 110.90241 * 90.65529 * 27 26 25 29 29 C 1.53002 * 110.74957 * 213.93688 * 27 26 25 30 30 H 1.08996 * 109.47001 * 60.00681 * 1 2 3 31 31 H 1.09008 * 109.46703 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47346 * 299.99788 * 1 2 3 33 33 H 0.96996 * 120.00094 * 179.97438 * 7 6 4 34 34 H 1.09004 * 109.47697 * 269.99796 * 13 12 2 35 35 H 1.08999 * 109.48123 * 30.00087 * 13 12 2 36 36 H 1.09000 * 109.47308 * 150.00082 * 13 12 2 37 37 H 0.96995 * 120.00626 * 113.75509 * 17 14 12 38 38 H 1.08002 * 120.01399 * 0.35293 * 21 20 18 39 39 H 1.07998 * 120.11390 * 180.02562 * 22 21 20 40 40 H 1.08005 * 119.82775 * 179.81919 * 23 22 21 41 41 H 1.07996 * 119.88392 * 180.02562 * 24 23 22 42 42 H 1.09001 * 109.46916 * 173.36800 * 29 27 26 43 43 H 1.08994 * 109.47388 * 53.36406 * 29 27 26 44 44 H 1.09004 * 109.46372 * 293.36757 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.5786 -1.6370 1.1339 6 6 1.7945 -0.1774 2.4796 7 7 1.1296 0.9512 2.5972 8 14 2.4165 -1.0582 4.0049 9 1 3.7824 -0.5762 4.3325 10 1 1.5063 -0.7780 5.1442 11 1 2.4554 -2.5208 3.7506 12 7 2.0184 -0.6906 -1.1962 13 6 1.7476 -2.1186 -1.3793 14 16 2.8766 0.1429 -2.3411 15 8 2.6172 1.5212 -2.1124 16 8 2.6206 -0.5007 -3.5819 17 7 4.4834 -0.0908 -2.0159 18 6 5.0690 0.4535 -0.7882 19 1 4.3002 0.6271 -0.0353 20 6 5.8439 1.7251 -1.0749 21 6 5.5407 2.8455 -1.8165 22 6 6.4569 3.8775 -1.9158 23 6 7.6752 3.7787 -1.2692 24 6 7.9793 2.6592 -0.5230 25 6 7.0611 1.6175 -0.4147 26 8 7.1464 0.4467 0.2745 27 6 6.1761 -0.4795 -0.2429 28 1 6.6028 -1.0821 -1.0447 29 6 5.6309 -1.3731 0.8729 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 0.9619 1.3260 3.4760 34 1 2.5548 -2.7015 -0.9357 35 1 0.8056 -2.3750 -0.8945 36 1 1.6808 -2.3421 -2.4440 37 1 5.0369 -0.5880 -2.6381 38 1 4.5882 2.9184 -2.3204 39 1 6.2213 4.7572 -2.4964 40 1 8.3922 4.5825 -1.3485 41 1 8.9329 2.5901 -0.0207 42 1 4.8162 -1.9839 0.4838 43 1 5.2615 -0.7515 1.6885 44 1 6.4267 -2.0206 1.2413 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000288628699.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:02:47 Heat of formation + Delta-G solvation = -97.239494 kcal Electronic energy + Delta-G solvation = -29712.086632 eV Core-core repulsion = 25755.994434 eV Total energy + Delta-G solvation = -3956.092198 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.27059 -38.47863 -38.38758 -37.87903 -36.93511 -36.40268 -34.46258 -32.41640 -31.79785 -30.96598 -30.70927 -27.22446 -27.10159 -26.84132 -23.49516 -22.82839 -22.67194 -22.47644 -20.49102 -18.90180 -18.74624 -18.27024 -18.16993 -17.99950 -17.19750 -16.96137 -16.44351 -16.12156 -15.47558 -15.26484 -15.05624 -14.82608 -14.66409 -14.54343 -14.36132 -14.17152 -13.63027 -13.45073 -13.43368 -13.38575 -13.22328 -13.15800 -12.98196 -12.87167 -12.76691 -12.72126 -12.68122 -12.46210 -12.23343 -12.17977 -11.96515 -11.81864 -11.76528 -11.10111 -10.62925 -10.47754 -9.89762 -9.66918 -9.16844 -8.07814 -6.19939 -0.39336 0.31896 0.41165 1.45184 1.48394 1.55039 1.89742 2.21226 2.46239 2.55098 2.77956 3.23822 3.32418 3.41231 3.43386 3.86163 3.94862 4.06443 4.18690 4.22515 4.25839 4.40037 4.50213 4.64368 4.69482 4.75892 4.82412 4.87308 4.94356 4.94734 5.04559 5.10905 5.17921 5.19704 5.31481 5.37154 5.47951 5.56548 5.61804 5.68449 5.71029 5.84979 5.98848 6.12399 6.21222 6.31087 6.90560 7.49797 8.98625 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010287 B = 0.005951 C = 0.004696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2721.360662 B = 4703.793941 C = 5961.464923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.272 3.728 3 H 0.027 0.973 4 C -0.516 4.516 5 H 0.079 0.921 6 C 0.021 3.979 7 N -0.920 5.920 8 Si 0.942 3.058 9 H -0.279 1.279 10 H -0.294 1.294 11 H -0.257 1.257 12 N -0.994 5.994 13 C 0.093 3.907 14 S 2.794 3.206 15 O -1.007 7.007 16 O -1.005 7.005 17 N -1.099 6.099 18 C 0.173 3.827 19 H 0.098 0.902 20 C -0.207 4.207 21 C -0.079 4.079 22 C -0.154 4.154 23 C -0.074 4.074 24 C -0.146 4.146 25 C 0.091 3.909 26 O -0.310 6.310 27 C 0.085 3.915 28 H 0.118 0.882 29 C -0.148 4.148 30 H 0.017 0.983 31 H 0.049 0.951 32 H 0.059 0.941 33 H 0.261 0.739 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.425 0.575 38 H 0.115 0.885 39 H 0.151 0.849 40 H 0.169 0.831 41 H 0.149 0.851 42 H 0.092 0.908 43 H 0.049 0.951 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.566 -2.279 -7.134 14.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.168 3.832 3 H 0.045 0.955 4 C -0.556 4.556 5 H 0.097 0.903 6 C -0.179 4.179 7 N -0.559 5.559 8 Si 0.768 3.232 9 H -0.205 1.205 10 H -0.221 1.221 11 H -0.181 1.181 12 N -0.836 5.836 13 C -0.052 4.052 14 S 2.803 3.197 15 O -0.990 6.990 16 O -0.989 6.989 17 N -0.859 5.859 18 C 0.065 3.935 19 H 0.116 0.884 20 C -0.210 4.210 21 C -0.098 4.098 22 C -0.172 4.172 23 C -0.092 4.092 24 C -0.165 4.165 25 C 0.046 3.954 26 O -0.224 6.224 27 C 0.028 3.972 28 H 0.135 0.865 29 C -0.205 4.205 30 H 0.037 0.963 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.261 0.739 38 H 0.133 0.867 39 H 0.168 0.832 40 H 0.187 0.813 41 H 0.167 0.833 42 H 0.111 0.889 43 H 0.068 0.932 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 12.146 -1.649 -7.430 14.334 hybrid contribution -0.149 -0.506 1.066 1.190 sum 11.997 -2.155 -6.364 13.750 Atomic orbital electron populations 1.21931 0.98322 1.00093 0.99369 1.18442 0.91548 0.91660 0.81579 0.95508 1.21571 1.35110 1.08829 0.90062 0.90321 1.25591 0.95379 0.95362 1.01564 1.70047 1.41330 1.20264 1.24281 0.85801 0.77941 0.79880 0.79578 1.20471 1.22085 1.18101 1.57555 1.68570 1.20194 1.37294 1.21480 1.02999 0.79344 1.01388 1.01324 0.72970 0.73029 0.72388 1.93548 1.84730 1.34533 1.86220 1.93533 1.84764 1.77491 1.43158 1.55661 1.28825 1.70419 1.31031 1.20834 0.96630 0.89796 0.86261 0.88442 1.21234 0.96282 0.98863 1.04612 1.20689 0.99721 0.92379 0.96977 1.21404 0.94372 0.99012 1.02413 1.21303 0.96869 0.96936 0.94107 1.20626 0.99436 0.92813 1.03603 1.19835 0.94030 0.88712 0.92857 1.86843 1.58299 1.21984 1.55299 1.23736 0.85658 0.89927 0.97913 0.86465 1.21938 1.02101 0.99148 0.97312 0.96342 0.93196 0.92217 0.93030 0.91735 0.90607 0.90732 0.73918 0.86687 0.83176 0.81339 0.83308 0.88927 0.93182 0.89463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.34 9.08 71.98 0.65 -5.68 16 2 C 0.27 12.66 2.25 44.24 0.10 12.76 16 3 H 0.03 1.46 6.85 -2.39 -0.02 1.45 16 4 C -0.52 -24.35 8.30 25.60 0.21 -24.14 16 5 H 0.08 3.43 7.10 -2.91 -0.02 3.41 16 6 C 0.02 1.05 5.32 84.65 0.45 1.50 16 7 N -0.92 -50.44 11.73 21.44 0.25 -50.19 16 8 Si 0.94 40.06 29.54 68.60 2.03 42.08 16 9 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 10 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 11 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 12 N -0.99 -38.06 3.12 -520.46 -1.62 -39.68 16 13 C 0.09 2.89 9.69 127.77 1.24 4.13 16 14 S 2.79 104.31 6.08 -56.49 -0.34 103.97 16 15 O -1.01 -45.02 15.10 -128.00 -1.93 -46.95 16 16 O -1.01 -38.65 16.86 -128.00 -2.16 -40.81 16 17 N -1.10 -33.06 5.65 -168.80 -0.95 -34.01 16 18 C 0.17 5.77 3.20 45.13 0.14 5.91 16 19 H 0.10 3.98 7.54 -2.38 -0.02 3.96 16 20 C -0.21 -6.97 5.93 -19.53 -0.12 -7.08 16 21 C -0.08 -2.58 10.03 22.18 0.22 -2.36 16 22 C -0.15 -3.86 10.07 22.31 0.22 -3.64 16 23 C -0.07 -1.57 10.02 22.21 0.22 -1.35 16 24 C -0.15 -3.59 10.06 22.45 0.23 -3.36 16 25 C 0.09 2.81 7.04 22.68 0.16 2.97 16 26 O -0.31 -9.62 10.81 -95.07 -1.03 -10.65 16 27 C 0.08 2.35 3.98 31.18 0.12 2.48 16 28 H 0.12 2.53 7.91 -2.39 -0.02 2.51 16 29 C -0.15 -4.06 9.58 71.98 0.69 -3.37 16 30 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.05 2.09 6.84 -2.38 -0.02 2.07 16 32 H 0.06 3.05 6.52 -2.39 -0.02 3.03 16 33 H 0.26 13.84 8.31 -92.71 -0.77 13.07 16 34 H 0.06 1.73 7.99 -2.39 -0.02 1.71 16 35 H 0.08 2.37 6.67 -2.39 -0.02 2.36 16 36 H 0.07 2.10 7.08 -2.39 -0.02 2.08 16 37 H 0.42 9.87 8.71 -96.75 -0.84 9.03 16 38 H 0.12 4.13 6.80 -2.91 -0.02 4.11 16 39 H 0.15 2.92 8.06 -2.91 -0.02 2.89 16 40 H 0.17 2.16 8.06 -2.91 -0.02 2.14 16 41 H 0.15 2.87 8.06 -2.91 -0.02 2.84 16 42 H 0.09 2.43 7.98 -2.39 -0.02 2.41 16 43 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 Total: -1.00 -65.76 369.65 -1.03 -66.79 By element: Atomic # 1 Polarization: 30.48 SS G_CDS: 0.18 Total: 30.66 kcal Atomic # 6 Polarization: -25.78 SS G_CDS: 4.55 Total: -21.23 kcal Atomic # 7 Polarization: -121.55 SS G_CDS: -2.33 Total: -123.88 kcal Atomic # 8 Polarization: -93.29 SS G_CDS: -5.12 Total: -98.41 kcal Atomic # 14 Polarization: 40.06 SS G_CDS: 2.03 Total: 42.08 kcal Atomic # 16 Polarization: 104.31 SS G_CDS: -0.34 Total: 103.97 kcal Total: -65.76 -1.03 -66.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288628699.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.448 kcal (2) G-P(sol) polarization free energy of solvation -65.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds