Wall clock time and date at job start Wed Apr 1 2020 00:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47448 * 2 1 4 4 C 1.50700 * 109.47630 * 239.99973 * 2 1 3 5 5 H 1.08002 * 120.00134 * 240.00585 * 4 2 1 6 6 C 1.37878 * 119.99980 * 59.99514 * 4 2 1 7 7 N 1.31517 * 119.99723 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99928 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47114 * 60.00874 * 8 6 4 10 10 H 1.48506 * 109.46951 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47270 * 300.00205 * 8 6 4 12 12 N 1.46499 * 109.46994 * 119.99793 * 2 1 3 13 13 C 1.46504 * 120.00138 * 54.83859 * 12 2 1 14 14 S 1.65600 * 120.00120 * 234.83511 * 12 2 1 15 15 O 1.42105 * 106.40522 * 209.48041 * 14 12 2 16 16 O 1.42095 * 106.40387 * 342.40344 * 14 12 2 17 17 N 1.65604 * 107.21720 * 95.94280 * 14 12 2 18 18 C 1.46500 * 119.99863 * 294.76577 * 17 14 12 19 19 H 1.08996 * 110.83369 * 26.25930 * 18 17 14 20 20 C 1.51641 * 110.93843 * 262.54629 * 18 17 14 21 21 C 1.37748 * 132.16795 * 46.40492 * 20 18 17 22 22 C 1.38346 * 119.97857 * 180.38987 * 21 20 18 23 23 C 1.38291 * 119.76446 * 0.02562 * 22 21 20 24 24 C 1.37929 * 120.35299 * 359.81121 * 23 22 21 25 25 C 1.38880 * 107.04717 * 226.45990 * 20 18 17 26 26 O 1.36139 * 111.23087 * 358.92664 * 25 20 18 27 27 C 1.43768 * 109.23870 * 19.02155 * 26 25 20 28 28 H 1.08997 * 110.75270 * 90.58226 * 27 26 25 29 29 C 1.53005 * 110.74976 * 213.93653 * 27 26 25 30 30 H 1.08999 * 109.47334 * 173.43090 * 1 2 3 31 31 H 1.09004 * 109.46995 * 53.43376 * 1 2 3 32 32 H 1.08997 * 109.47071 * 293.43383 * 1 2 3 33 33 H 0.97001 * 119.99704 * 179.97438 * 7 6 4 34 34 H 1.08999 * 109.47143 * 89.99794 * 13 12 2 35 35 H 1.08994 * 109.47448 * 209.99860 * 13 12 2 36 36 H 1.08999 * 109.47068 * 330.00239 * 13 12 2 37 37 H 0.96995 * 120.00111 * 114.76024 * 17 14 12 38 38 H 1.08002 * 120.01145 * 0.37680 * 21 20 18 39 39 H 1.08002 * 120.11957 * 179.97438 * 22 21 20 40 40 H 1.08000 * 119.82047 * 179.82682 * 23 22 21 41 41 H 1.07998 * 119.88058 * 179.97438 * 24 23 22 42 42 H 1.09001 * 109.47190 * 173.36880 * 29 27 26 43 43 H 1.09010 * 109.46670 * 293.36278 * 29 27 26 44 44 H 1.08993 * 109.47080 * 53.35872 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3216 -1.1204 -4.0078 9 1 1.8260 -2.5202 -4.0077 10 1 1.8271 -0.4200 -5.2204 11 1 3.8066 -1.1209 -4.0080 12 7 2.0183 -0.6906 1.1962 13 6 1.5736 -2.0559 1.4867 14 16 3.0730 0.0721 2.2200 15 8 3.8660 -0.9478 2.8119 16 8 3.6239 1.1603 1.4910 17 7 2.1754 0.7356 3.4434 18 6 1.2231 1.8104 3.1532 19 1 0.8767 1.7534 2.1214 20 6 1.8323 3.1678 3.4462 21 6 3.0545 3.7201 3.1322 22 6 3.3574 5.0065 3.5414 23 6 2.4299 5.7329 4.2656 24 6 1.2042 5.1830 4.5783 25 6 0.8899 3.8900 4.1667 26 8 -0.2508 3.1692 4.3476 27 6 0.0319 1.7750 4.1399 28 1 0.3196 1.2957 5.0756 29 6 -1.1701 1.0657 3.5130 30 1 -0.3634 -1.0209 -0.1176 31 1 -0.3633 0.6123 -0.8254 32 1 -0.3633 0.4087 0.9429 33 1 0.7095 1.1617 -3.4844 34 1 2.2554 -2.7671 1.0203 35 1 1.5658 -2.2139 2.5651 36 1 0.5688 -2.2028 1.0906 37 1 2.2800 0.4125 4.3519 38 1 3.7761 3.1490 2.5669 39 1 4.3151 5.4416 3.2968 40 1 2.6665 6.7362 4.5879 41 1 0.4857 5.7570 5.1446 42 1 -0.8952 0.0426 3.2566 43 1 -1.9959 1.0526 4.2245 44 1 -1.4757 1.5967 2.6115 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000288628702.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:02:50 Heat of formation + Delta-G solvation = -96.225770 kcal Electronic energy + Delta-G solvation = -29398.954954 eV Core-core repulsion = 25442.906714 eV Total energy + Delta-G solvation = -3956.048239 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.29844 -38.49251 -38.38682 -37.90297 -36.91779 -36.44378 -34.52871 -32.45374 -31.80122 -30.92469 -30.70128 -27.40073 -27.00398 -26.89301 -23.51757 -22.86565 -22.64790 -22.47743 -20.42352 -19.05116 -18.71130 -18.40657 -18.11487 -17.98502 -17.25336 -16.96676 -16.49944 -16.13352 -15.51397 -15.26530 -15.09098 -14.87321 -14.64839 -14.52115 -14.40963 -14.21642 -13.76835 -13.47200 -13.43682 -13.35857 -13.17232 -13.11139 -13.01100 -12.94673 -12.79737 -12.76059 -12.58998 -12.44337 -12.25327 -12.11651 -11.98226 -11.81615 -11.75228 -11.16801 -10.69310 -10.49222 -9.90593 -9.70502 -9.18160 -8.11958 -6.24791 -0.43707 0.30709 0.40977 1.41815 1.43947 1.50581 1.91470 2.19237 2.42279 2.56841 2.77406 3.16848 3.28262 3.37818 3.40519 3.77501 3.94669 4.02401 4.14910 4.21009 4.22670 4.38463 4.49696 4.61594 4.66770 4.68471 4.84725 4.86120 4.94212 4.96038 5.02491 5.10260 5.14056 5.19592 5.28019 5.36527 5.47686 5.57495 5.61717 5.66738 5.68453 5.88396 6.00425 6.14841 6.20346 6.29720 6.82172 7.44104 8.91915 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013386 B = 0.004281 C = 0.004171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.244836 B = 6539.621664 C = 6711.481504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.274 3.726 3 H 0.025 0.975 4 C -0.541 4.541 5 H 0.053 0.947 6 C 0.021 3.979 7 N -0.912 5.912 8 Si 0.950 3.050 9 H -0.266 1.266 10 H -0.282 1.282 11 H -0.281 1.281 12 N -0.994 5.994 13 C 0.100 3.900 14 S 2.792 3.208 15 O -1.008 7.008 16 O -1.004 7.004 17 N -1.099 6.099 18 C 0.169 3.831 19 H 0.097 0.903 20 C -0.210 4.210 21 C -0.082 4.082 22 C -0.157 4.157 23 C -0.074 4.074 24 C -0.145 4.145 25 C 0.095 3.905 26 O -0.306 6.306 27 C 0.083 3.917 28 H 0.117 0.883 29 C -0.151 4.151 30 H 0.044 0.956 31 H 0.061 0.939 32 H 0.045 0.955 33 H 0.264 0.736 34 H 0.040 0.960 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.426 0.574 38 H 0.116 0.884 39 H 0.146 0.854 40 H 0.168 0.832 41 H 0.151 0.849 42 H 0.094 0.906 43 H 0.091 0.909 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.912 4.235 16.869 17.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.169 3.831 3 H 0.043 0.957 4 C -0.580 4.580 5 H 0.071 0.929 6 C -0.179 4.179 7 N -0.551 5.551 8 Si 0.776 3.224 9 H -0.191 1.191 10 H -0.207 1.207 11 H -0.207 1.207 12 N -0.837 5.837 13 C -0.045 4.045 14 S 2.801 3.199 15 O -0.992 6.992 16 O -0.987 6.987 17 N -0.860 5.860 18 C 0.061 3.939 19 H 0.114 0.886 20 C -0.212 4.212 21 C -0.101 4.101 22 C -0.175 4.175 23 C -0.092 4.092 24 C -0.164 4.164 25 C 0.050 3.950 26 O -0.220 6.220 27 C 0.026 3.974 28 H 0.134 0.866 29 C -0.208 4.208 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.058 0.942 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.263 0.737 38 H 0.134 0.866 39 H 0.164 0.836 40 H 0.185 0.815 41 H 0.169 0.831 42 H 0.113 0.887 43 H 0.110 0.890 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.294 4.487 16.516 17.429 hybrid contribution 0.368 -0.725 -1.079 1.350 sum -2.926 3.763 15.437 16.156 Atomic orbital electron populations 1.21935 0.96381 1.00864 1.00092 1.18419 0.92544 0.91196 0.80896 0.95685 1.21628 1.31795 1.12963 0.91638 0.92875 1.25577 0.95206 0.95656 1.01482 1.69975 1.37215 1.23521 1.24348 0.85734 0.78404 0.79156 0.79076 1.19095 1.20703 1.20687 1.57558 1.65514 1.24389 1.36222 1.21401 1.01373 0.81176 1.00572 1.01400 0.73456 0.72560 0.72471 1.93534 1.67879 1.59107 1.78710 1.93541 1.76928 1.55649 1.72592 1.55718 1.57522 1.48318 1.24484 1.20928 0.88869 0.83338 1.00815 0.88567 1.21207 0.97295 0.98375 1.04369 1.20804 0.95543 0.96351 0.97392 1.21399 1.01615 0.93642 1.00845 1.21304 0.91508 1.00701 0.95652 1.20621 0.98948 0.92566 1.04251 1.19764 0.85615 0.94407 0.95261 1.86850 1.29207 1.18844 1.87106 1.23788 0.94727 0.80344 0.98507 0.86569 1.21995 0.96363 1.00819 1.01637 0.93718 0.92042 0.93659 0.92692 0.94170 0.89919 0.89849 0.73711 0.86603 0.83633 0.81464 0.83085 0.88721 0.89020 0.92191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.63 8.57 71.98 0.62 -5.01 16 2 C 0.27 12.99 2.30 44.25 0.10 13.09 16 3 H 0.03 1.38 6.85 -2.39 -0.02 1.36 16 4 C -0.54 -28.98 8.45 25.60 0.22 -28.76 16 5 H 0.05 2.86 7.80 -2.91 -0.02 2.83 16 6 C 0.02 1.14 5.30 84.65 0.45 1.59 16 7 N -0.91 -50.86 11.40 21.45 0.24 -50.61 16 8 Si 0.95 43.26 29.54 68.60 2.03 45.29 16 9 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 11 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 12 N -0.99 -38.93 3.12 -520.45 -1.62 -40.56 16 13 C 0.10 3.20 9.77 127.77 1.25 4.45 16 14 S 2.79 105.89 6.02 -56.49 -0.34 105.55 16 15 O -1.01 -40.56 17.42 -128.00 -2.23 -42.79 16 16 O -1.00 -46.23 14.45 -128.00 -1.85 -48.08 16 17 N -1.10 -30.62 5.67 -168.82 -0.96 -31.58 16 18 C 0.17 4.93 3.20 45.13 0.14 5.07 16 19 H 0.10 3.27 6.68 -2.39 -0.02 3.26 16 20 C -0.21 -6.54 5.93 -19.53 -0.12 -6.66 16 21 C -0.08 -2.65 9.98 22.18 0.22 -2.43 16 22 C -0.16 -3.92 10.07 22.31 0.22 -3.70 16 23 C -0.07 -1.49 10.02 22.21 0.22 -1.27 16 24 C -0.15 -3.25 10.06 22.45 0.23 -3.02 16 25 C 0.10 2.63 7.04 22.68 0.16 2.79 16 26 O -0.31 -8.03 10.81 -95.13 -1.03 -9.06 16 27 C 0.08 1.87 3.98 31.18 0.12 2.00 16 28 H 0.12 2.00 7.87 -2.39 -0.02 1.98 16 29 C -0.15 -2.91 9.06 71.98 0.65 -2.26 16 30 H 0.04 1.78 6.84 -2.39 -0.02 1.77 16 31 H 0.06 2.98 6.28 -2.38 -0.01 2.96 16 32 H 0.04 1.57 6.56 -2.39 -0.02 1.55 16 33 H 0.26 14.09 8.31 -92.71 -0.77 13.32 16 34 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.08 2.03 7.94 -2.39 -0.02 2.01 16 36 H 0.08 2.48 6.32 -2.39 -0.02 2.47 16 37 H 0.43 8.99 8.65 -96.75 -0.84 8.15 16 38 H 0.12 4.28 6.13 -2.91 -0.02 4.27 16 39 H 0.15 2.95 8.06 -2.91 -0.02 2.92 16 40 H 0.17 2.03 8.06 -2.91 -0.02 2.01 16 41 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 42 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 44 H 0.06 1.35 7.94 -2.39 -0.02 1.33 16 Total: -1.00 -70.74 366.23 -1.07 -71.81 By element: Atomic # 1 Polarization: 23.96 SS G_CDS: 0.19 Total: 24.15 kcal Atomic # 6 Polarization: -28.62 SS G_CDS: 4.49 Total: -24.13 kcal Atomic # 7 Polarization: -120.41 SS G_CDS: -2.34 Total: -122.74 kcal Atomic # 8 Polarization: -94.83 SS G_CDS: -5.11 Total: -99.93 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Atomic # 16 Polarization: 105.89 SS G_CDS: -0.34 Total: 105.55 kcal Total: -70.74 -1.07 -71.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288628702.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.412 kcal (2) G-P(sol) polarization free energy of solvation -70.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds