Wall clock time and date at job start Tue Mar 31 2020 23:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46574 * 2 1 4 4 S 1.81399 * 109.47272 * 119.99633 * 2 1 3 5 5 O 1.42100 * 108.57867 * 305.51916 * 4 2 1 6 6 O 1.42098 * 108.57838 * 174.49204 * 4 2 1 7 7 C 1.81401 * 101.91869 * 60.00392 * 4 2 1 8 8 C 1.53002 * 109.46710 * 180.02562 * 7 4 2 9 9 N 1.46499 * 109.46861 * 180.02562 * 8 7 4 10 10 C 1.34781 * 119.99968 * 179.97438 * 9 8 7 11 11 O 1.21572 * 120.00134 * 359.97438 * 10 9 8 12 12 N 1.34783 * 119.99877 * 180.02562 * 10 9 8 13 13 C 1.39236 * 119.99636 * 184.29090 * 12 10 9 14 14 C 1.39481 * 119.83681 * 324.69610 * 13 12 10 15 15 C 1.36376 * 120.17073 * 180.29622 * 14 13 12 16 16 C 1.40868 * 119.82553 * 359.49187 * 15 14 13 17 17 C 1.41155 * 120.15840 * 180.25124 * 16 15 14 18 18 H 1.08007 * 119.99826 * 215.00602 * 17 16 15 19 19 C 1.39895 * 120.00481 * 35.01331 * 17 16 15 20 20 N 1.30876 * 119.99949 * 355.53526 * 19 17 16 21 21 Si 1.86794 * 120.00004 * 175.54513 * 19 17 16 22 22 H 1.48500 * 109.47375 * 59.99379 * 21 19 17 23 23 H 1.48503 * 109.47298 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47219 * 299.99325 * 21 19 17 25 25 C 1.40870 * 119.67277 * 0.50490 * 16 15 14 26 26 C 1.36365 * 119.82848 * 359.74277 * 25 16 15 27 27 H 1.09003 * 109.47191 * 60.00394 * 1 2 3 28 28 H 1.09007 * 109.46582 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47699 * 300.00112 * 1 2 3 30 30 H 1.09003 * 109.47296 * 240.00067 * 2 1 3 31 31 H 1.09005 * 109.46698 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.47040 * 299.99699 * 3 2 1 33 33 H 1.08995 * 109.47373 * 60.00333 * 3 2 1 34 34 H 1.08996 * 109.47408 * 60.00048 * 7 4 2 35 35 H 1.09000 * 109.47213 * 299.99454 * 7 4 2 36 36 H 1.08995 * 109.47617 * 60.00207 * 8 7 4 37 37 H 1.09003 * 109.47473 * 299.99641 * 8 7 4 38 38 H 0.96998 * 119.99997 * 0.02562 * 9 8 7 39 39 H 0.96999 * 119.99776 * 4.28566 * 12 10 9 40 40 H 1.07999 * 119.91387 * 0.03109 * 14 13 12 41 41 H 1.08004 * 120.08495 * 179.69989 * 15 14 13 42 42 H 0.96992 * 120.00204 * 180.02562 * 20 19 17 43 43 H 1.08002 * 120.08147 * 179.71369 * 25 16 15 44 44 H 1.08001 * 119.91706 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 16 2.1347 -0.8550 1.4812 5 8 1.5479 -0.2494 2.6248 6 8 3.5497 -0.9569 1.3991 7 6 1.4230 -2.5108 1.2747 8 6 1.8334 -3.3930 2.4555 9 7 1.2591 -4.7304 2.2885 10 6 1.4892 -5.6829 3.2139 11 8 2.1736 -5.4324 4.1870 12 7 0.9613 -6.9135 3.0600 13 6 1.1238 -7.8705 4.0582 14 6 2.3098 -7.9143 4.7911 15 6 2.4786 -8.8526 5.7662 16 6 1.4472 -9.7723 6.0397 17 6 1.6124 -10.7431 7.0510 18 1 1.1822 -11.7264 6.9311 19 6 2.3332 -10.4315 8.2088 20 7 2.9282 -9.2707 8.3167 21 14 2.4468 -11.6722 9.6005 22 1 3.0868 -12.9166 9.1034 23 1 3.2613 -11.1042 10.7048 24 1 1.0831 -11.9823 10.0997 25 6 0.2523 -9.7218 5.2952 26 6 0.1001 -8.7811 4.3199 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 3.1299 1.4426 -0.0005 32 1 1.6765 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.7895 -2.9508 0.3473 35 1 0.3362 -2.4370 1.2373 36 1 1.4665 -2.9529 3.3827 37 1 2.9202 -3.4669 2.4935 38 1 0.7140 -4.9306 1.5116 39 1 0.4681 -7.1323 2.2539 40 1 3.0980 -7.2060 4.5829 41 1 3.3994 -8.8883 6.3296 42 1 3.4282 -9.0548 9.1192 43 1 -0.5409 -10.4267 5.4962 44 1 -0.8152 -8.7413 3.7480 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289750807.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:51 Heat of formation + Delta-G solvation = -78.012736 kcal Electronic energy + Delta-G solvation = -26305.182338 eV Core-core repulsion = 22349.923875 eV Total energy + Delta-G solvation = -3955.258463 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.94908 -37.53198 -37.41040 -36.44468 -35.64626 -35.47138 -34.32719 -32.91654 -31.13655 -29.43658 -28.73658 -27.93549 -25.12481 -23.94330 -22.72794 -21.50200 -21.05771 -20.12570 -19.13385 -18.10490 -17.61371 -17.23599 -16.72839 -16.54491 -16.20223 -15.72600 -15.17757 -15.12828 -14.74869 -14.30909 -14.12205 -13.91236 -13.84707 -13.70128 -13.04328 -12.94330 -12.68076 -12.61104 -12.45932 -12.35687 -12.28719 -12.06048 -12.01459 -11.98049 -11.67346 -11.41066 -11.37475 -11.10630 -10.91889 -10.70981 -10.45961 -9.97929 -9.85739 -9.58420 -9.12935 -8.96640 -8.73153 -7.47165 -6.82951 -6.53768 -4.27961 -0.54045 2.25487 2.69781 2.89306 3.09710 3.13872 3.15384 3.20190 3.26741 3.48975 3.68125 3.91994 3.96929 4.03153 4.04462 4.38117 4.46201 4.60605 4.77747 4.80259 4.87054 4.97869 5.01445 5.14868 5.34465 5.43322 5.43681 5.47605 5.70613 6.16029 6.36804 6.44919 6.79598 6.85430 7.09252 7.19170 7.32085 7.40678 7.69876 7.85330 8.05638 8.14328 8.34180 8.46535 8.72750 8.95811 8.98756 9.10999 10.37337 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.028330 B = 0.001874 C = 0.001800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.099232 B =14936.414522 C =15554.228059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.574 4.574 3 C -0.144 4.144 4 S 2.424 3.576 5 O -0.926 6.926 6 O -0.930 6.930 7 C -0.635 4.635 8 C 0.154 3.846 9 N -0.748 5.748 10 C 0.693 3.307 11 O -0.569 6.569 12 N -0.666 5.666 13 C 0.022 3.978 14 C -0.094 4.094 15 C -0.143 4.143 16 C 0.099 3.901 17 C -0.464 4.464 18 H 0.074 0.926 19 C 0.069 3.931 20 N -0.808 5.808 21 Si 0.916 3.084 22 H -0.266 1.266 23 H -0.279 1.279 24 H -0.267 1.267 25 C -0.204 4.204 26 C -0.115 4.115 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.137 0.863 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.139 0.861 35 H 0.141 0.859 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.394 0.606 39 H 0.391 0.609 40 H 0.109 0.891 41 H 0.130 0.870 42 H 0.279 0.721 43 H 0.096 0.904 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.253 17.259 -19.887 26.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.683 4.683 3 C -0.202 4.202 4 S 2.603 3.397 5 O -0.923 6.923 6 O -0.927 6.927 7 C -0.762 4.762 8 C 0.028 3.972 9 N -0.407 5.407 10 C 0.393 3.607 11 O -0.444 6.444 12 N -0.312 5.312 13 C -0.071 4.071 14 C -0.114 4.114 15 C -0.163 4.163 16 C 0.096 3.904 17 C -0.495 4.495 18 H 0.093 0.907 19 C -0.147 4.147 20 N -0.435 5.435 21 Si 0.741 3.259 22 H -0.191 1.191 23 H -0.205 1.205 24 H -0.192 1.192 25 C -0.224 4.224 26 C -0.136 4.136 27 H 0.099 0.901 28 H 0.089 0.911 29 H 0.099 0.901 30 H 0.155 0.845 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.094 0.906 34 H 0.158 0.842 35 H 0.159 0.841 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.228 0.772 39 H 0.224 0.776 40 H 0.127 0.873 41 H 0.148 0.852 42 H 0.090 0.910 43 H 0.114 0.886 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.929 17.970 -18.110 25.813 hybrid contribution -1.118 -0.956 -0.924 1.737 sum -5.046 17.014 -19.034 26.024 Atomic orbital electron populations 1.21766 0.89895 1.03742 1.05201 1.30054 1.07017 1.10106 1.21160 1.21651 1.02232 0.91549 1.04792 1.08198 0.76193 0.77607 0.77654 1.93609 1.79206 1.74212 1.45247 1.93616 1.26703 1.85710 1.86622 1.30711 1.14458 1.22633 1.08441 1.20657 0.99679 0.81815 0.95045 1.44969 1.58026 1.10875 1.26838 1.16024 0.81393 0.80451 0.82838 1.90962 1.42251 1.80551 1.30680 1.42068 1.57909 1.09954 1.21277 1.17085 0.96867 0.95352 0.97793 1.20685 0.95306 0.98252 0.97154 1.21309 1.00308 0.97263 0.97407 1.17723 0.89773 0.92422 0.90473 1.19425 1.29668 0.99426 1.01001 0.90738 1.25889 0.93209 0.95640 0.99941 1.69780 1.25236 1.20561 1.27892 0.86260 0.79041 0.80760 0.79885 1.19112 1.20456 1.19186 1.20662 0.98066 1.02007 1.01629 1.20036 0.95617 0.98237 0.99700 0.90135 0.91098 0.90147 0.84487 0.90680 0.89940 0.90622 0.84223 0.84111 0.89912 0.89997 0.77209 0.77617 0.87293 0.85204 0.91025 0.88567 0.89254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.45 8.94 37.16 0.33 -0.12 16 2 C -0.57 -2.36 3.31 -26.73 -0.09 -2.45 16 3 C -0.14 -0.67 9.20 37.16 0.34 -0.32 16 4 S 2.42 19.00 4.24 -107.50 -0.46 18.55 16 5 O -0.93 -10.60 17.91 -57.83 -1.04 -11.64 16 6 O -0.93 -10.80 18.10 -57.83 -1.05 -11.85 16 7 C -0.63 -3.76 5.47 37.16 0.20 -3.55 16 8 C 0.15 1.76 5.68 -4.04 -0.02 1.74 16 9 N -0.75 -9.14 5.56 -65.23 -0.36 -9.50 16 10 C 0.69 12.56 8.40 -86.91 -0.73 11.83 16 11 O -0.57 -13.24 13.76 5.30 0.07 -13.17 16 12 N -0.67 -11.68 5.31 -14.10 -0.07 -11.75 16 13 C 0.02 0.48 6.31 -83.57 -0.53 -0.04 16 14 C -0.09 -2.39 8.61 -39.79 -0.34 -2.73 16 15 C -0.14 -3.91 8.61 -39.26 -0.34 -4.25 16 16 C 0.10 2.68 5.55 -106.80 -0.59 2.09 16 17 C -0.46 -12.56 9.02 -37.86 -0.34 -12.90 16 18 H 0.07 1.91 7.85 -52.48 -0.41 1.50 16 19 C 0.07 1.79 5.42 -17.34 -0.09 1.70 16 20 N -0.81 -22.01 10.61 55.54 0.59 -21.43 16 21 Si 0.92 19.46 29.56 -169.99 -5.03 14.44 16 22 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 23 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 24 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 25 C -0.20 -4.96 9.74 -39.26 -0.38 -5.34 16 26 C -0.12 -2.53 9.90 -39.79 -0.39 -2.92 16 27 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 28 H 0.07 0.09 6.55 -51.93 -0.34 -0.25 16 29 H 0.08 0.30 8.06 -51.93 -0.42 -0.12 16 30 H 0.14 0.23 8.14 -51.92 -0.42 -0.19 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.14 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.14 0.45 6.87 -51.92 -0.36 0.09 16 36 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.39 3.14 8.49 -40.82 -0.35 2.79 16 39 H 0.39 5.08 8.83 -40.82 -0.36 4.72 16 40 H 0.11 2.82 6.22 -52.49 -0.33 2.50 16 41 H 0.13 3.72 6.15 -52.48 -0.32 3.40 16 42 H 0.28 7.01 8.30 -40.82 -0.34 6.67 16 43 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 44 H 0.09 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 379.09 15.07 5.71 5.71 Total: -1.00 -38.11 379.09 -10.85 -48.96 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -6.25 Total: 8.97 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: -2.98 Total: -17.29 kcal Atomic # 7 Polarization: -42.83 SS G_CDS: 0.15 Total: -42.68 kcal Atomic # 8 Polarization: -34.65 SS G_CDS: -2.01 Total: -36.66 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.03 Total: 14.44 kcal Atomic # 16 Polarization: 19.00 SS G_CDS: -0.46 Total: 18.55 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -38.11 -10.85 -48.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289750807.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.053 kcal (2) G-P(sol) polarization free energy of solvation -38.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds