Wall clock time and date at job start Tue Mar 31 2020 23:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46574 * 2 1 4 4 S 1.81399 * 109.47272 * 119.99633 * 2 1 3 5 5 O 1.42100 * 108.57867 * 305.51916 * 4 2 1 6 6 O 1.42098 * 108.57838 * 174.49204 * 4 2 1 7 7 C 1.81401 * 101.91869 * 60.00392 * 4 2 1 8 8 C 1.53002 * 109.46710 * 180.02562 * 7 4 2 9 9 N 1.46499 * 109.46861 * 180.02562 * 8 7 4 10 10 C 1.34781 * 119.99968 * 179.97438 * 9 8 7 11 11 O 1.21572 * 120.00134 * 359.97438 * 10 9 8 12 12 N 1.34783 * 119.99877 * 180.02562 * 10 9 8 13 13 C 1.39236 * 119.99636 * 184.29090 * 12 10 9 14 14 C 1.39481 * 119.83681 * 324.69610 * 13 12 10 15 15 C 1.36376 * 120.17073 * 180.29622 * 14 13 12 16 16 C 1.40868 * 119.82553 * 359.49187 * 15 14 13 17 17 C 1.41155 * 120.15840 * 180.25124 * 16 15 14 18 18 H 1.08007 * 119.99826 * 215.00602 * 17 16 15 19 19 C 1.39895 * 120.00481 * 35.01331 * 17 16 15 20 20 N 1.30876 * 119.99949 * 355.53526 * 19 17 16 21 21 Si 1.86794 * 120.00004 * 175.54513 * 19 17 16 22 22 H 1.48500 * 109.47375 * 59.99379 * 21 19 17 23 23 H 1.48503 * 109.47298 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47219 * 299.99325 * 21 19 17 25 25 C 1.40870 * 119.67277 * 0.50490 * 16 15 14 26 26 C 1.36365 * 119.82848 * 359.74277 * 25 16 15 27 27 H 1.09003 * 109.47191 * 60.00394 * 1 2 3 28 28 H 1.09007 * 109.46582 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47699 * 300.00112 * 1 2 3 30 30 H 1.09003 * 109.47296 * 240.00067 * 2 1 3 31 31 H 1.09005 * 109.46698 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.47040 * 299.99699 * 3 2 1 33 33 H 1.08995 * 109.47373 * 60.00333 * 3 2 1 34 34 H 1.08996 * 109.47408 * 60.00048 * 7 4 2 35 35 H 1.09000 * 109.47213 * 299.99454 * 7 4 2 36 36 H 1.08995 * 109.47617 * 60.00207 * 8 7 4 37 37 H 1.09003 * 109.47473 * 299.99641 * 8 7 4 38 38 H 0.96998 * 119.99997 * 0.02562 * 9 8 7 39 39 H 0.96999 * 119.99776 * 4.28566 * 12 10 9 40 40 H 1.07999 * 119.91387 * 0.03109 * 14 13 12 41 41 H 1.08004 * 120.08495 * 179.69989 * 15 14 13 42 42 H 0.96992 * 120.00204 * 180.02562 * 20 19 17 43 43 H 1.08002 * 120.08147 * 179.71369 * 25 16 15 44 44 H 1.08001 * 119.91706 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 16 2.1347 -0.8550 1.4812 5 8 1.5479 -0.2494 2.6248 6 8 3.5497 -0.9569 1.3991 7 6 1.4230 -2.5108 1.2747 8 6 1.8334 -3.3930 2.4555 9 7 1.2591 -4.7304 2.2885 10 6 1.4892 -5.6829 3.2139 11 8 2.1736 -5.4324 4.1870 12 7 0.9613 -6.9135 3.0600 13 6 1.1238 -7.8705 4.0582 14 6 2.3098 -7.9143 4.7911 15 6 2.4786 -8.8526 5.7662 16 6 1.4472 -9.7723 6.0397 17 6 1.6124 -10.7431 7.0510 18 1 1.1822 -11.7264 6.9311 19 6 2.3332 -10.4315 8.2088 20 7 2.9282 -9.2707 8.3167 21 14 2.4468 -11.6722 9.6005 22 1 3.0868 -12.9166 9.1034 23 1 3.2613 -11.1042 10.7048 24 1 1.0831 -11.9823 10.0997 25 6 0.2523 -9.7218 5.2952 26 6 0.1001 -8.7811 4.3199 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 3.1299 1.4426 -0.0005 32 1 1.6765 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.7895 -2.9508 0.3473 35 1 0.3362 -2.4370 1.2373 36 1 1.4665 -2.9529 3.3827 37 1 2.9202 -3.4669 2.4935 38 1 0.7140 -4.9306 1.5116 39 1 0.4681 -7.1323 2.2539 40 1 3.0980 -7.2060 4.5829 41 1 3.3994 -8.8883 6.3296 42 1 3.4282 -9.0548 9.1192 43 1 -0.5409 -10.4267 5.4962 44 1 -0.8152 -8.7413 3.7480 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000289750807.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:50 Heat of formation + Delta-G solvation = -108.215178 kcal Electronic energy + Delta-G solvation = -26306.492014 eV Core-core repulsion = 22349.923875 eV Total energy + Delta-G solvation = -3956.568139 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.45829 -39.29767 -38.12499 -37.16983 -36.73325 -36.04721 -35.94741 -34.71684 -32.21194 -31.36165 -30.47235 -28.27717 -26.83015 -24.91422 -23.42939 -23.10409 -22.73197 -21.74229 -19.85671 -19.41379 -19.19321 -18.40975 -17.99468 -17.33790 -17.11711 -16.83888 -16.59521 -16.12963 -15.80990 -15.64878 -15.47582 -15.26442 -14.74532 -14.47624 -14.25452 -14.11689 -13.94418 -13.66051 -13.42442 -13.28060 -13.23153 -13.22142 -13.05798 -12.98566 -12.80279 -12.65903 -12.32879 -12.31998 -12.28681 -12.01654 -11.78712 -11.70770 -11.35787 -11.12032 -10.91652 -10.56238 -10.23223 -9.42561 -8.69802 -8.47195 -6.30349 -1.11426 0.87636 1.15982 1.39242 1.49062 1.52692 1.67282 1.74393 2.14882 2.25344 2.60817 2.84623 2.98721 3.36230 3.39797 3.60658 3.62906 3.71914 3.84488 4.22076 4.24966 4.46147 4.47906 4.50777 4.63174 4.63511 4.67499 4.80439 4.90283 5.00607 5.13001 5.13188 5.17756 5.27646 5.30090 5.35511 5.44334 5.72355 5.81149 6.10671 6.16535 6.19277 6.39675 6.73812 6.98319 7.05631 7.14431 7.62326 8.45631 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.028330 B = 0.001874 C = 0.001800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.099232 B =14936.414522 C =15554.228059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.539 4.539 3 C -0.159 4.159 4 S 2.402 3.598 5 O -0.978 6.978 6 O -0.982 6.982 7 C -0.615 4.615 8 C 0.140 3.860 9 N -0.717 5.717 10 C 0.687 3.313 11 O -0.627 6.627 12 N -0.653 5.653 13 C 0.038 3.962 14 C -0.111 4.111 15 C -0.168 4.168 16 C 0.063 3.937 17 C -0.496 4.496 18 H 0.081 0.919 19 C 0.020 3.980 20 N -0.849 5.849 21 Si 0.992 3.008 22 H -0.257 1.257 23 H -0.275 1.275 24 H -0.259 1.259 25 C -0.207 4.207 26 C -0.106 4.106 27 H 0.100 0.900 28 H 0.097 0.903 29 H 0.067 0.933 30 H 0.175 0.825 31 H 0.068 0.932 32 H 0.108 0.892 33 H 0.065 0.935 34 H 0.182 0.818 35 H 0.179 0.821 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.421 0.579 39 H 0.419 0.581 40 H 0.094 0.906 41 H 0.102 0.898 42 H 0.281 0.719 43 H 0.115 0.885 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.305 17.122 -23.363 30.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.652 4.652 3 C -0.218 4.218 4 S 2.589 3.411 5 O -0.975 6.975 6 O -0.979 6.979 7 C -0.744 4.744 8 C 0.014 3.986 9 N -0.377 5.377 10 C 0.387 3.613 11 O -0.507 6.507 12 N -0.301 5.301 13 C -0.056 4.056 14 C -0.132 4.132 15 C -0.189 4.189 16 C 0.060 3.940 17 C -0.527 4.527 18 H 0.099 0.901 19 C -0.191 4.191 20 N -0.477 5.477 21 Si 0.812 3.188 22 H -0.181 1.181 23 H -0.200 1.200 24 H -0.183 1.183 25 C -0.227 4.227 26 C -0.127 4.127 27 H 0.118 0.882 28 H 0.116 0.884 29 H 0.086 0.914 30 H 0.192 0.808 31 H 0.087 0.913 32 H 0.126 0.874 33 H 0.084 0.916 34 H 0.200 0.800 35 H 0.197 0.803 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.260 0.740 39 H 0.257 0.743 40 H 0.112 0.888 41 H 0.120 0.880 42 H 0.091 0.909 43 H 0.133 0.867 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -7.005 17.851 -21.650 28.922 hybrid contribution -0.239 -0.738 -0.078 0.779 sum -7.244 17.113 -21.728 28.591 Atomic orbital electron populations 1.21967 0.88418 1.05737 1.05583 1.29789 1.07946 1.09030 1.18455 1.21838 1.02143 0.92187 1.05609 1.08463 0.75294 0.78530 0.78789 1.93545 1.79451 1.75482 1.49002 1.93551 1.30049 1.86616 1.87725 1.30549 1.16825 1.19438 1.07565 1.20746 0.98745 0.81990 0.97103 1.44624 1.57142 1.09810 1.26136 1.16302 0.80700 0.81228 0.83056 1.90946 1.44671 1.81572 1.33500 1.41769 1.58034 1.09009 1.21326 1.17119 0.95465 0.95579 0.97431 1.20690 0.96703 0.97833 0.97928 1.21161 1.00031 0.99070 0.98602 1.18076 0.90978 0.93117 0.91789 1.19735 1.31170 0.99914 1.01924 0.90091 1.26878 0.92304 0.97518 1.02440 1.69920 1.26367 1.22704 1.28750 0.85112 0.79340 0.78088 0.76228 1.18082 1.20014 1.18275 1.20951 0.97387 1.02800 1.01549 1.20416 0.96885 0.96445 0.98920 0.88161 0.88436 0.91380 0.80775 0.91290 0.87370 0.91563 0.80034 0.80285 0.92007 0.91950 0.74024 0.74343 0.88771 0.88002 0.90858 0.86734 0.84252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.30 8.94 71.98 0.64 0.35 16 2 C -0.54 -2.64 3.31 30.60 0.10 -2.54 16 3 C -0.16 -1.17 9.20 71.98 0.66 -0.51 16 4 S 2.40 36.12 4.24 -56.49 -0.24 35.88 16 5 O -0.98 -23.48 17.91 -127.37 -2.28 -25.77 16 6 O -0.98 -23.74 18.10 -127.37 -2.30 -26.04 16 7 C -0.61 -5.25 5.47 71.98 0.39 -4.86 16 8 C 0.14 3.08 5.68 86.38 0.49 3.57 16 9 N -0.72 -15.69 5.56 -478.54 -2.66 -18.35 16 10 C 0.69 24.19 8.40 179.05 1.50 25.69 16 11 O -0.63 -30.14 13.76 -3.94 -0.05 -30.19 16 12 N -0.65 -21.28 5.31 -316.78 -1.68 -22.96 16 13 C 0.04 1.67 6.31 38.57 0.24 1.92 16 14 C -0.11 -5.88 8.61 22.13 0.19 -5.69 16 15 C -0.17 -9.74 8.61 22.48 0.19 -9.55 16 16 C 0.06 3.52 5.55 -21.28 -0.12 3.40 16 17 C -0.50 -27.66 9.02 23.39 0.21 -27.45 16 18 H 0.08 4.22 7.85 -2.91 -0.02 4.20 16 19 C 0.02 1.05 5.42 85.24 0.46 1.52 16 20 N -0.85 -48.79 10.61 21.82 0.23 -48.55 16 21 Si 0.99 40.70 29.56 68.60 2.03 42.73 16 22 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 23 H -0.28 -10.96 7.11 99.48 0.71 -10.26 16 24 H -0.26 -10.16 7.11 99.48 0.71 -9.46 16 25 C -0.21 -9.89 9.74 22.48 0.22 -9.67 16 26 C -0.11 -4.39 9.90 22.13 0.22 -4.17 16 27 H 0.10 -0.10 8.14 -2.39 -0.02 -0.11 16 28 H 0.10 -0.33 6.55 -2.38 -0.02 -0.34 16 29 H 0.07 0.34 8.06 -2.39 -0.02 0.32 16 30 H 0.17 -0.34 8.14 -2.39 -0.02 -0.36 16 31 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 32 H 0.11 0.28 8.14 -2.39 -0.02 0.27 16 33 H 0.07 0.61 8.14 -2.39 -0.02 0.60 16 34 H 0.18 0.08 8.14 -2.39 -0.02 0.06 16 35 H 0.18 0.18 6.87 -2.39 -0.02 0.17 16 36 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.42 4.66 8.49 -92.71 -0.79 3.88 16 39 H 0.42 9.01 8.83 -92.71 -0.82 8.19 16 40 H 0.09 5.19 6.22 -2.91 -0.02 5.17 16 41 H 0.10 6.35 6.15 -2.91 -0.02 6.33 16 42 H 0.28 14.90 8.30 -92.71 -0.77 14.13 16 43 H 0.11 4.96 8.06 -2.91 -0.02 4.94 16 44 H 0.14 4.36 8.06 -2.91 -0.02 4.34 16 Total: -1.00 -92.61 379.09 -2.12 -94.73 By element: Atomic # 1 Polarization: 27.10 SS G_CDS: -0.57 Total: 26.53 kcal Atomic # 6 Polarization: -33.42 SS G_CDS: 5.42 Total: -28.00 kcal Atomic # 7 Polarization: -85.76 SS G_CDS: -4.11 Total: -89.87 kcal Atomic # 8 Polarization: -77.36 SS G_CDS: -4.64 Total: -82.00 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 2.03 Total: 42.73 kcal Atomic # 16 Polarization: 36.12 SS G_CDS: -0.24 Total: 35.88 kcal Total: -92.61 -2.12 -94.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289750807.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.486 kcal (2) G-P(sol) polarization free energy of solvation -92.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds