Wall clock time and date at job start Wed Apr 1 2020 00:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 S 1.65597 * 119.99926 * 2 1 4 4 O 1.42096 * 106.40195 * 178.26439 * 3 2 1 5 5 O 1.42108 * 106.40105 * 311.18495 * 3 2 1 6 6 C 1.76199 * 107.22117 * 64.72196 * 3 2 1 7 7 C 1.38257 * 120.00261 * 269.73039 * 6 3 2 8 8 C 1.38216 * 120.00298 * 179.74025 * 7 6 3 9 9 C 1.38251 * 119.99681 * 0.55467 * 8 7 6 10 10 C 1.38221 * 120.00336 * 359.69652 * 9 8 7 11 11 C 1.50696 * 120.00241 * 180.02562 * 10 9 8 12 12 H 1.09001 * 109.47032 * 160.02479 * 11 10 9 13 13 C 1.53003 * 109.46850 * 280.02173 * 11 10 9 14 14 N 1.46496 * 109.47364 * 40.02196 * 11 10 9 15 15 C 1.34774 * 120.00261 * 155.00341 * 14 11 10 16 16 O 1.21280 * 119.99799 * 359.97438 * 15 14 11 17 17 C 1.50695 * 120.00376 * 180.02562 * 15 14 11 18 18 C 1.52998 * 109.47464 * 179.97438 * 17 15 14 19 19 C 1.50697 * 109.47147 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00229 * 0.02562 * 19 18 17 21 21 C 1.37887 * 119.99792 * 179.97438 * 19 18 17 22 22 N 1.31509 * 119.99836 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99713 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47282 * 0.02562 * 23 21 19 25 25 H 1.48507 * 109.46801 * 120.00311 * 23 21 19 26 26 H 1.48505 * 109.47109 * 240.00179 * 23 21 19 27 27 C 1.38213 * 120.00144 * 89.99671 * 6 3 2 28 28 H 1.08998 * 109.47492 * 60.27856 * 1 2 3 29 29 H 1.08998 * 109.47377 * 180.28047 * 1 2 3 30 30 H 1.09009 * 109.47454 * 300.27562 * 1 2 3 31 31 H 0.97001 * 119.99790 * 179.71788 * 2 1 3 32 32 H 1.08000 * 119.99786 * 359.97438 * 7 6 3 33 33 H 1.07994 * 120.00153 * 180.27199 * 8 7 6 34 34 H 1.07997 * 120.00225 * 179.72231 * 9 8 7 35 35 H 1.08998 * 109.46860 * 180.02562 * 13 11 10 36 36 H 1.09002 * 109.46819 * 299.99824 * 13 11 10 37 37 H 1.09000 * 109.47544 * 59.99731 * 13 11 10 38 38 H 0.96998 * 120.00024 * 334.99681 * 14 11 10 39 39 H 1.08998 * 109.46935 * 299.99981 * 17 15 14 40 40 H 1.08998 * 109.46894 * 59.99408 * 17 15 14 41 41 H 1.08998 * 109.47251 * 300.00059 * 18 17 15 42 42 H 1.09008 * 109.47220 * 59.99875 * 18 17 15 43 43 H 0.97002 * 120.00046 * 180.02562 * 22 21 19 44 44 H 1.08007 * 119.99465 * 0.02562 * 27 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 3.6735 1.1004 0.0413 5 8 1.7161 2.2305 -1.0260 6 6 1.9314 2.2452 1.5218 7 6 0.8552 3.1091 1.6062 8 6 0.5684 3.7412 2.8014 9 6 1.3645 3.5185 3.9095 10 6 2.4435 2.6589 3.8239 11 6 3.3109 2.4157 5.0320 12 1 3.8635 1.4853 4.9011 13 6 4.2957 3.5753 5.1944 14 7 2.4685 2.3195 6.2267 15 6 2.9006 1.6320 7.3024 16 8 3.9866 1.0926 7.2811 17 6 2.0338 1.5325 8.5311 18 6 2.7532 0.7037 9.5970 19 6 1.8867 0.6048 10.8260 20 1 0.9193 1.0847 10.8447 21 6 2.3284 -0.0994 11.9261 22 7 3.5061 -0.6842 11.9031 23 14 1.2545 -0.2213 13.4497 24 1 -0.0128 0.5186 13.2226 25 1 0.9511 -1.6481 13.7285 26 1 1.9714 0.3680 14.6091 27 6 2.7269 2.0221 2.6299 28 1 -0.3634 0.5095 -0.8924 29 1 -0.3634 -1.0276 0.0050 30 1 -0.3634 0.5181 0.8876 31 1 1.9500 -0.8401 0.0041 32 1 0.2364 3.2870 0.7391 33 1 -0.2748 4.4126 2.8684 34 1 1.1431 4.0158 4.8423 35 1 4.9234 3.3991 6.0679 36 1 4.9225 3.6468 4.3055 37 1 3.7432 4.5057 5.3252 38 1 1.5998 2.7506 6.2436 39 1 1.8373 2.5320 8.9189 40 1 1.0907 1.0513 8.2724 41 1 2.9494 -0.2958 9.2090 42 1 3.6966 1.1846 9.8558 43 1 3.8167 -1.1798 12.6769 44 1 3.5704 1.3509 2.5627 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291626071.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:18 Heat of formation + Delta-G solvation = -96.857175 kcal Electronic energy + Delta-G solvation = -26680.476208 eV Core-core repulsion = 22724.400589 eV Total energy + Delta-G solvation = -3956.075619 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.29324 -38.94705 -37.62085 -36.23358 -35.61489 -35.42355 -33.48438 -32.03676 -31.66894 -30.82724 -29.37965 -26.46632 -25.83593 -24.29975 -23.74076 -22.12050 -21.07168 -19.81331 -19.72217 -18.27629 -17.96652 -17.02667 -16.69482 -16.47646 -16.13820 -15.80105 -15.29026 -14.98750 -14.90878 -14.49718 -14.42590 -14.24827 -13.92045 -13.67665 -13.33723 -13.27243 -12.90997 -12.74133 -12.51968 -12.45814 -12.32146 -12.26174 -12.06917 -12.06165 -11.83886 -11.21304 -11.19197 -11.12354 -10.97101 -10.60806 -10.11775 -10.00203 -9.81085 -9.70680 -9.39928 -9.19239 -9.02907 -8.91010 -8.35303 -5.99105 -4.03571 -0.03291 0.39537 0.82741 2.56307 3.00853 3.18420 3.30112 3.36490 3.37902 3.40051 3.47131 3.91453 4.24889 4.39391 4.44790 4.53753 4.54732 4.71808 4.93849 4.96823 5.00322 5.17034 5.25324 5.26686 5.32649 5.35994 5.41754 5.48741 5.58133 5.65626 5.75465 5.81920 6.03901 6.12268 6.17680 6.19062 6.37735 6.43686 6.64323 6.84298 7.71268 7.78173 7.82592 8.03850 8.35207 8.70451 9.05111 9.60134 11.11851 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.019386 B = 0.002079 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.964025 B =13465.118284 C =13671.039959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -1.120 6.120 3 S 2.698 3.302 4 O -0.956 6.956 5 O -0.957 6.957 6 C -0.675 4.675 7 C -0.026 4.026 8 C -0.135 4.135 9 C -0.056 4.056 10 C -0.103 4.103 11 C 0.179 3.821 12 H 0.099 0.901 13 C -0.159 4.159 14 N -0.741 5.741 15 C 0.512 3.488 16 O -0.531 6.531 17 C -0.130 4.130 18 C 0.037 3.963 19 C -0.527 4.527 20 H 0.056 0.944 21 C 0.057 3.943 22 N -0.889 5.889 23 Si 0.893 3.107 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.284 1.284 27 C -0.008 4.008 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.061 0.939 31 H 0.421 0.579 32 H 0.140 0.860 33 H 0.135 0.865 34 H 0.132 0.868 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.057 0.943 38 H 0.395 0.605 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.023 0.977 42 H 0.024 0.976 43 H 0.260 0.740 44 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.639 7.352 -26.090 28.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.880 5.880 3 S 2.787 3.213 4 O -0.946 6.946 5 O -0.947 6.947 6 C -0.762 4.762 7 C -0.045 4.045 8 C -0.153 4.153 9 C -0.075 4.075 10 C -0.105 4.105 11 C 0.074 3.926 12 H 0.117 0.883 13 C -0.218 4.218 14 N -0.396 5.396 15 C 0.300 3.700 16 O -0.405 6.405 17 C -0.170 4.170 18 C -0.001 4.001 19 C -0.565 4.565 20 H 0.074 0.926 21 C -0.144 4.144 22 N -0.528 5.528 23 Si 0.721 3.279 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.210 1.210 27 C -0.028 4.028 28 H 0.087 0.913 29 H 0.103 0.897 30 H 0.079 0.921 31 H 0.255 0.745 32 H 0.158 0.842 33 H 0.153 0.847 34 H 0.150 0.850 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.230 0.770 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.042 0.958 42 H 0.042 0.958 43 H 0.070 0.930 44 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -7.301 7.303 -26.641 28.572 hybrid contribution -1.168 -0.099 1.665 2.036 sum -8.469 7.204 -24.976 27.339 Atomic orbital electron populations 1.21519 0.78318 1.04529 1.02034 1.55304 1.16318 1.24422 1.91975 1.01811 0.72910 0.72736 0.73880 1.93616 1.30614 1.83289 1.87100 1.93589 1.78922 1.68607 1.53543 1.30857 1.07645 1.16284 1.21401 1.20943 0.93414 0.91863 0.98299 1.21285 1.00476 1.00810 0.92768 1.21339 0.92860 0.94436 0.98834 1.20189 0.96972 0.97880 0.95428 1.19736 0.90436 1.00605 0.81829 0.88334 1.22189 0.99140 0.97396 1.03034 1.46383 1.21545 1.56913 1.14719 1.21596 0.87713 0.76354 0.84314 1.90676 1.22316 1.45346 1.82177 1.21874 0.98976 1.03076 0.93034 1.18903 0.95461 0.94955 0.90755 1.21249 1.03222 1.33100 0.98963 0.92582 1.25033 0.95093 0.95555 0.98746 1.70004 1.18511 1.34083 1.30171 0.86536 0.80525 0.77761 0.83126 1.19775 1.21010 1.20999 1.20794 0.96209 0.95236 0.90521 0.91253 0.89699 0.92075 0.74510 0.84187 0.84692 0.84971 0.90967 0.91643 0.92387 0.77036 0.90217 0.90267 0.95811 0.95793 0.92975 0.83908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.34 11.13 59.85 0.67 1.01 16 2 N -1.12 -6.50 6.19 -16.63 -0.10 -6.60 16 3 S 2.70 23.66 5.74 -107.50 -0.62 23.05 16 4 O -0.96 -11.24 17.28 -57.17 -0.99 -12.23 16 5 O -0.96 -10.51 17.02 -57.17 -0.97 -11.48 16 6 C -0.67 -5.93 5.94 -39.58 -0.24 -6.17 16 7 C -0.03 -0.20 9.52 -39.58 -0.38 -0.57 16 8 C -0.13 -0.95 10.05 -39.58 -0.40 -1.35 16 9 C -0.06 -0.45 9.06 -39.58 -0.36 -0.81 16 10 C -0.10 -1.03 4.95 -104.62 -0.52 -1.55 16 11 C 0.18 2.16 2.78 -69.08 -0.19 1.97 16 12 H 0.10 1.36 7.44 -51.93 -0.39 0.97 16 13 C -0.16 -1.81 9.46 37.16 0.35 -1.46 16 14 N -0.74 -9.72 5.03 -54.94 -0.28 -9.99 16 15 C 0.51 9.39 7.79 -10.99 -0.09 9.30 16 16 O -0.53 -12.03 15.64 5.56 0.09 -11.94 16 17 C -0.13 -2.54 5.64 -27.89 -0.16 -2.69 16 18 C 0.04 0.97 4.26 -27.89 -0.12 0.85 16 19 C -0.53 -14.75 9.11 -34.44 -0.31 -15.06 16 20 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 21 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 22 N -0.89 -27.21 13.29 55.43 0.74 -26.47 16 23 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 24 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 27 C -0.01 -0.08 9.15 -39.58 -0.36 -0.44 16 28 H 0.07 0.27 8.11 -51.93 -0.42 -0.15 16 29 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.06 0.22 8.14 -51.92 -0.42 -0.20 16 31 H 0.42 1.78 8.96 -34.47 -0.31 1.47 16 32 H 0.14 0.81 7.61 -52.49 -0.40 0.41 16 33 H 0.14 0.61 8.06 -52.49 -0.42 0.18 16 34 H 0.13 0.83 6.92 -52.49 -0.36 0.47 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.39 3.98 6.87 -40.82 -0.28 3.70 16 39 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 40 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 41 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 42 H 0.02 0.69 8.10 -51.92 -0.42 0.27 16 43 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.14 1.33 7.60 -52.48 -0.40 0.93 16 LS Contribution 386.15 15.07 5.82 5.82 Total: -1.00 -38.40 386.15 -9.85 -48.26 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -6.32 Total: 0.58 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: -2.20 Total: -15.41 kcal Atomic # 7 Polarization: -43.42 SS G_CDS: 0.36 Total: -43.06 kcal Atomic # 8 Polarization: -33.78 SS G_CDS: -1.87 Total: -35.65 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: 23.66 SS G_CDS: -0.62 Total: 23.05 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -38.40 -9.85 -48.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291626071.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.600 kcal (2) G-P(sol) polarization free energy of solvation -38.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds