Wall clock time and date at job start Wed Apr 1 2020 00:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 S 1.65597 * 119.99791 * 2 1 4 4 O 1.42102 * 106.40060 * 178.54054 * 3 2 1 5 5 O 1.42101 * 106.40207 * 311.45359 * 3 2 1 6 6 C 1.76196 * 107.22133 * 64.99502 * 3 2 1 7 7 C 1.38229 * 120.00286 * 269.72854 * 6 3 2 8 8 C 1.38232 * 120.00221 * 179.74358 * 7 6 3 9 9 C 1.38236 * 119.99979 * 0.54926 * 8 7 6 10 10 C 1.50699 * 120.00201 * 179.72499 * 9 8 7 11 11 H 1.09008 * 109.47258 * 199.98172 * 10 9 8 12 12 C 1.53000 * 109.47359 * 79.98004 * 10 9 8 13 13 N 1.46505 * 109.47118 * 319.97426 * 10 9 8 14 14 C 1.34775 * 120.00085 * 204.99649 * 13 10 9 15 15 O 1.21278 * 120.00147 * 0.02562 * 14 13 10 16 16 C 1.50702 * 119.99908 * 180.02562 * 14 13 10 17 17 C 1.53000 * 109.47001 * 180.02562 * 16 14 13 18 18 C 1.50702 * 109.47001 * 179.97438 * 17 16 14 19 19 H 1.07997 * 119.99691 * 0.02562 * 18 17 16 20 20 C 1.37872 * 119.99808 * 180.02562 * 18 17 16 21 21 N 1.31520 * 119.99811 * 179.97438 * 20 18 17 22 22 Si 1.86796 * 120.00115 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.47219 * 90.00319 * 22 20 18 24 24 H 1.48503 * 109.47393 * 209.99852 * 22 20 18 25 25 H 1.48498 * 109.47199 * 330.00189 * 22 20 18 26 26 C 1.38233 * 119.99638 * 359.70492 * 9 8 7 27 27 C 1.38234 * 120.00449 * 0.02562 * 26 9 8 28 28 H 1.09001 * 109.46577 * 60.00460 * 1 2 3 29 29 H 1.09001 * 109.47060 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47212 * 300.00385 * 1 2 3 31 31 H 0.96995 * 120.00050 * 179.72084 * 2 1 3 32 32 H 1.08006 * 119.99944 * 359.97438 * 7 6 3 33 33 H 1.08003 * 120.00203 * 180.27514 * 8 7 6 34 34 H 1.08999 * 109.46682 * 59.99807 * 12 10 9 35 35 H 1.09000 * 109.47060 * 179.97438 * 12 10 9 36 36 H 1.09000 * 109.46541 * 299.99959 * 12 10 9 37 37 H 0.96995 * 119.99448 * 25.00646 * 13 10 9 38 38 H 1.09001 * 109.46861 * 300.00226 * 16 14 13 39 39 H 1.08996 * 109.46812 * 60.00001 * 16 14 13 40 40 H 1.08996 * 109.47583 * 300.00187 * 17 16 14 41 41 H 1.09004 * 109.46659 * 60.00210 * 17 16 14 42 42 H 0.96997 * 119.99505 * 179.97438 * 21 20 18 43 43 H 1.08004 * 119.99955 * 179.97438 * 26 9 8 44 44 H 1.08003 * 120.00327 * 179.97438 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 3.6738 1.1003 0.0347 5 8 1.7121 2.2328 -1.0217 6 6 1.9377 2.2416 1.5252 7 6 0.8621 3.1051 1.6161 8 6 0.5803 3.7344 2.8141 9 6 1.3807 3.5091 3.9183 10 6 1.0772 4.2000 5.2227 11 1 1.9679 4.1976 5.8511 12 6 -0.0548 3.4614 5.9397 13 7 0.6689 5.5822 4.9598 14 6 0.8295 6.5247 5.9097 15 8 1.3125 6.2287 6.9821 16 6 0.4090 7.9464 5.6394 17 6 0.6982 8.8067 6.8711 18 6 0.2783 10.2285 6.6006 19 1 -0.1522 10.4920 5.6458 20 6 0.4437 11.1928 7.5719 21 7 0.0777 12.4338 7.3356 22 14 1.1876 10.7369 9.2236 23 1 2.6627 10.8982 9.1636 24 1 0.6351 11.6251 10.2776 25 1 0.8567 9.3248 9.5427 26 6 2.4595 2.6496 3.8261 27 6 2.7381 2.0159 2.6295 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.9500 -0.8400 0.0041 32 1 0.2397 3.2851 0.7519 33 1 -0.2628 4.4057 2.8862 34 1 0.2491 2.4331 6.1353 35 1 -0.2740 3.9609 6.8834 36 1 -0.9454 3.4639 5.3114 37 1 0.2828 5.8190 4.1020 38 1 0.9664 8.3342 4.7867 39 1 -0.6581 7.9739 5.4189 40 1 0.1413 8.4190 7.7241 41 1 1.7655 8.7790 7.0911 42 1 0.1937 13.1121 8.0192 43 1 3.0852 2.4739 4.6887 44 1 3.5812 1.3448 2.5574 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292448315.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:26 Heat of formation + Delta-G solvation = -124.190217 kcal Electronic energy + Delta-G solvation = -26529.397138 eV Core-core repulsion = 22572.136269 eV Total energy + Delta-G solvation = -3957.260869 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.29462 -40.13827 -38.38996 -37.01883 -36.77270 -35.87674 -35.52614 -33.57030 -32.72270 -32.09473 -30.49701 -28.01298 -26.82777 -25.42635 -24.15976 -23.40450 -21.92740 -21.19014 -20.58192 -19.34041 -19.09819 -18.60696 -17.82773 -17.63164 -17.12851 -16.56160 -16.45097 -16.17756 -15.91521 -15.56803 -15.38778 -14.97317 -14.87708 -14.65870 -14.54457 -14.50721 -14.31717 -13.90777 -13.77745 -13.50486 -13.40321 -13.27286 -13.18669 -13.00383 -12.90087 -12.54039 -12.48127 -12.18647 -12.11453 -11.97216 -11.82385 -11.76217 -11.40409 -10.83739 -10.78617 -10.55532 -10.38897 -10.13077 -10.08879 -8.31817 -6.34774 -0.68742 -0.32637 0.23568 1.33028 1.34909 1.49557 1.65750 1.95931 2.16603 2.34482 2.43707 2.75287 3.03878 3.26556 3.36798 3.71510 3.86355 3.95510 4.16291 4.18822 4.24603 4.29465 4.37777 4.40923 4.49290 4.61094 4.66273 4.68417 4.81854 4.89521 4.91495 4.99893 5.00117 5.02841 5.03631 5.19274 5.26138 5.34775 5.44445 5.52180 5.60975 5.73694 6.09728 6.22951 6.51553 6.71931 7.26255 7.30603 8.83807 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.024276 B = 0.001995 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.149093 B =14028.450155 C =14367.252213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -1.110 6.110 3 S 2.716 3.284 4 O -0.989 6.989 5 O -0.985 6.985 6 C -0.682 4.682 7 C -0.022 4.022 8 C -0.136 4.136 9 C -0.035 4.035 10 C 0.173 3.827 11 H 0.084 0.916 12 C -0.152 4.152 13 N -0.717 5.717 14 C 0.519 3.481 15 O -0.580 6.580 16 C -0.118 4.118 17 C 0.005 3.995 18 C -0.529 4.529 19 H 0.050 0.950 20 C 0.012 3.988 21 N -0.944 5.944 22 Si 0.939 3.061 23 H -0.270 1.270 24 H -0.279 1.279 25 H -0.260 1.260 26 C -0.135 4.135 27 C -0.022 4.022 28 H 0.066 0.934 29 H 0.108 0.892 30 H 0.069 0.931 31 H 0.429 0.571 32 H 0.158 0.842 33 H 0.153 0.847 34 H 0.083 0.917 35 H 0.046 0.954 36 H 0.075 0.925 37 H 0.414 0.586 38 H 0.100 0.900 39 H 0.105 0.895 40 H 0.012 0.988 41 H 0.008 0.992 42 H 0.267 0.733 43 H 0.148 0.852 44 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.719 -32.786 -15.283 36.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.873 5.873 3 S 2.806 3.194 4 O -0.980 6.980 5 O -0.975 6.975 6 C -0.770 4.770 7 C -0.041 4.041 8 C -0.155 4.155 9 C -0.036 4.036 10 C 0.069 3.931 11 H 0.102 0.898 12 C -0.211 4.211 13 N -0.372 5.372 14 C 0.308 3.692 15 O -0.459 6.459 16 C -0.158 4.158 17 C -0.033 4.033 18 C -0.567 4.567 19 H 0.068 0.932 20 C -0.186 4.186 21 N -0.584 5.584 22 Si 0.764 3.236 23 H -0.195 1.195 24 H -0.204 1.204 25 H -0.184 1.184 26 C -0.154 4.154 27 C -0.041 4.041 28 H 0.085 0.915 29 H 0.126 0.874 30 H 0.088 0.912 31 H 0.266 0.734 32 H 0.176 0.824 33 H 0.170 0.830 34 H 0.102 0.898 35 H 0.065 0.935 36 H 0.094 0.906 37 H 0.252 0.748 38 H 0.119 0.881 39 H 0.123 0.877 40 H 0.030 0.970 41 H 0.026 0.974 42 H 0.076 0.924 43 H 0.165 0.835 44 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 0.013 -32.366 -15.127 35.726 hybrid contribution 0.101 0.386 1.224 1.287 sum 0.113 -31.980 -13.903 34.871 Atomic orbital electron populations 1.21782 0.77025 1.06177 1.02508 1.55017 1.17011 1.23550 1.91684 1.01036 0.72056 0.72888 0.73454 1.93558 1.32907 1.83937 1.87562 1.93560 1.79059 1.69704 1.55190 1.30873 1.07957 1.16690 1.21463 1.21161 0.93419 0.91021 0.98486 1.21321 1.00829 1.01186 0.92147 1.20267 0.94273 0.94615 0.94430 1.19911 0.99258 0.80647 0.93294 0.89825 1.22115 0.97989 1.00706 1.00246 1.46087 1.64951 1.07933 1.18201 1.21143 0.76558 0.88124 0.83405 1.90643 1.45797 1.83047 1.26443 1.21513 1.03864 0.89493 1.00923 1.19219 0.96085 0.93305 0.94667 1.21439 1.40881 0.93154 1.01220 0.93178 1.25828 0.95607 0.94776 1.02392 1.70030 1.49718 1.02569 1.36108 0.85813 0.79163 0.78877 0.79754 1.19512 1.20405 1.18403 1.21367 0.97399 0.97611 0.99044 1.21099 0.96357 0.95786 0.90855 0.91497 0.87351 0.91204 0.73409 0.82427 0.82974 0.89797 0.93485 0.90594 0.74802 0.88142 0.87713 0.97004 0.97395 0.92404 0.83467 0.82806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.26 11.14 127.77 1.42 1.68 16 2 N -1.11 -7.68 6.19 -206.52 -1.28 -8.96 16 3 S 2.72 39.72 5.74 -56.49 -0.32 39.39 16 4 O -0.99 -20.34 17.28 -128.00 -2.21 -22.56 16 5 O -0.99 -20.34 17.00 -128.00 -2.18 -22.51 16 6 C -0.68 -9.69 5.95 22.27 0.13 -9.56 16 7 C -0.02 -0.29 9.52 22.27 0.21 -0.07 16 8 C -0.14 -1.81 9.06 22.27 0.20 -1.61 16 9 C -0.03 -0.56 4.95 -19.87 -0.10 -0.65 16 10 C 0.17 3.45 2.78 44.24 0.12 3.57 16 11 H 0.08 1.99 7.44 -2.38 -0.02 1.97 16 12 C -0.15 -2.67 9.46 71.98 0.68 -1.99 16 13 N -0.72 -16.38 5.03 -446.08 -2.24 -18.62 16 14 C 0.52 17.33 7.79 87.66 0.68 18.02 16 15 O -0.58 -24.22 15.64 -3.02 -0.05 -24.27 16 16 C -0.12 -4.31 5.64 29.85 0.17 -4.14 16 17 C 0.01 0.26 3.33 29.85 0.10 0.36 16 18 C -0.53 -30.31 9.66 25.60 0.25 -30.07 16 19 H 0.05 3.02 7.99 -2.91 -0.02 3.00 16 20 C 0.01 0.69 5.47 84.65 0.46 1.15 16 21 N -0.94 -59.03 13.96 21.45 0.30 -58.73 16 22 Si 0.94 46.59 27.47 68.60 1.88 48.47 16 23 H -0.27 -13.00 7.11 99.48 0.71 -12.29 16 24 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 25 H -0.26 -12.72 6.54 99.48 0.65 -12.07 16 26 C -0.14 -2.01 9.67 22.27 0.22 -1.79 16 27 C -0.02 -0.31 9.52 22.27 0.21 -0.10 16 28 H 0.07 0.31 8.10 -2.39 -0.02 0.30 16 29 H 0.11 -0.11 8.14 -2.39 -0.02 -0.13 16 30 H 0.07 0.15 8.14 -2.39 -0.02 0.13 16 31 H 0.43 1.30 8.96 -96.75 -0.87 0.43 16 32 H 0.16 1.54 7.61 -2.91 -0.02 1.52 16 33 H 0.15 1.40 6.92 -2.91 -0.02 1.38 16 34 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.41 6.94 6.87 -92.71 -0.64 6.31 16 38 H 0.10 3.37 8.14 -2.39 -0.02 3.35 16 39 H 0.10 3.42 8.14 -2.39 -0.02 3.40 16 40 H 0.01 0.59 7.16 -2.39 -0.02 0.58 16 41 H 0.01 0.39 7.53 -2.38 -0.02 0.37 16 42 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 43 H 0.15 1.77 8.04 -2.91 -0.02 1.75 16 44 H 0.15 1.72 7.62 -2.91 -0.02 1.70 16 Total: -1.00 -83.90 382.54 -1.86 -85.76 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -0.53 Total: 7.24 kcal Atomic # 6 Polarization: -29.98 SS G_CDS: 4.76 Total: -25.22 kcal Atomic # 7 Polarization: -83.09 SS G_CDS: -3.22 Total: -86.31 kcal Atomic # 8 Polarization: -64.90 SS G_CDS: -4.44 Total: -69.33 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 1.88 Total: 48.47 kcal Atomic # 16 Polarization: 39.72 SS G_CDS: -0.32 Total: 39.39 kcal Total: -83.90 -1.86 -85.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292448315.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.433 kcal (2) G-P(sol) polarization free energy of solvation -83.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds