Wall clock time and date at job start Wed Apr 1 2020 00:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.47073 * 2 1 4 4 N 1.46496 * 109.47052 * 120.00093 * 2 1 3 5 5 C 1.34771 * 120.00303 * 274.99976 * 4 2 1 6 6 O 1.21290 * 120.00184 * 359.97438 * 5 4 2 7 7 C 1.50706 * 120.00262 * 180.02562 * 5 4 2 8 8 C 1.53003 * 109.47240 * 180.02562 * 7 5 4 9 9 C 1.50693 * 109.47114 * 179.97438 * 8 7 5 10 10 H 1.08001 * 119.99964 * 359.97438 * 9 8 7 11 11 C 1.37880 * 120.00225 * 180.02562 * 9 8 7 12 12 N 1.31511 * 119.99768 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99980 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46926 * 59.99902 * 13 11 9 15 15 H 1.48500 * 109.46752 * 179.97438 * 13 11 9 16 16 H 1.48494 * 109.47166 * 299.99691 * 13 11 9 17 17 C 1.50699 * 109.47376 * 240.00375 * 2 1 3 18 18 C 1.38122 * 120.03881 * 265.00086 * 17 2 1 19 19 C 1.38262 * 120.07626 * 180.02562 * 18 17 2 20 20 C 1.38302 * 120.14952 * 359.97438 * 19 18 17 21 21 C 1.38084 * 120.07517 * 0.02562 * 20 19 18 22 22 C 1.38896 * 120.03534 * 85.01976 * 17 2 1 23 23 N 1.39666 * 120.07786 * 359.95689 * 22 17 2 24 24 S 1.65595 * 120.00340 * 215.54229 * 23 22 17 25 25 C 1.81404 * 104.45077 * 60.01193 * 24 23 22 26 26 O 1.42099 * 104.28008 * 176.08093 * 24 23 22 27 27 O 1.42101 * 104.27950 * 303.93980 * 24 23 22 28 28 H 1.09004 * 109.47070 * 299.99717 * 1 2 3 29 29 H 1.09004 * 109.46674 * 59.99599 * 1 2 3 30 30 H 1.08994 * 109.46790 * 179.97438 * 1 2 3 31 31 H 0.97002 * 119.99490 * 95.00486 * 4 2 1 32 32 H 1.08996 * 109.46661 * 300.00128 * 7 5 4 33 33 H 1.09001 * 109.47137 * 59.99746 * 7 5 4 34 34 H 1.09003 * 109.47007 * 299.99943 * 8 7 5 35 35 H 1.09001 * 109.47384 * 59.99750 * 8 7 5 36 36 H 0.96996 * 119.99992 * 180.02562 * 12 11 9 37 37 H 1.08002 * 119.95798 * 0.04574 * 18 17 2 38 38 H 1.07998 * 119.92276 * 180.02562 * 19 18 17 39 39 H 1.07999 * 119.96597 * 179.74620 * 20 19 18 40 40 H 1.08005 * 120.03432 * 180.02562 * 21 20 19 41 41 H 0.97008 * 119.99965 * 35.54224 * 23 22 17 42 42 H 1.08999 * 109.46637 * 59.99776 * 25 24 23 43 43 H 1.09000 * 109.47243 * 180.02562 * 25 24 23 44 44 H 1.08999 * 109.46882 * 300.00578 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1471 -0.0184 2.3571 6 8 1.8591 1.1586 2.4116 7 6 2.6499 -0.7287 3.5875 8 6 2.7007 0.2542 4.7589 9 6 3.2029 -0.4562 5.9893 10 1 3.4598 -1.5041 5.9407 11 6 3.3335 0.2312 7.1773 12 7 3.0203 1.5071 7.2366 13 14 3.9555 -0.6497 8.7027 14 1 5.3172 -1.1834 8.4454 15 1 4.0048 0.3043 9.8396 16 1 3.0394 -1.7700 9.0354 17 6 2.0324 -0.7103 -1.2305 18 6 2.3611 -2.0505 -1.1694 19 6 2.8227 -2.7028 -2.2978 20 6 2.9563 -2.0165 -3.4911 21 6 2.6294 -0.6766 -3.5591 22 6 2.1658 -0.0179 -2.4272 23 7 1.8338 1.3371 -2.4926 24 16 1.1443 1.9554 -3.8654 25 6 -0.3966 1.0181 -4.0596 26 8 0.8661 3.3100 -3.5384 27 8 2.0626 1.6248 -4.8982 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 2.2491 -1.6318 1.1525 32 1 1.9777 -1.5510 3.8324 33 1 3.6493 -1.1205 3.3978 34 1 3.3727 1.0768 4.5141 35 1 1.7012 0.6457 4.9484 36 1 3.1125 1.9908 8.0723 37 1 2.2572 -2.5894 -0.2393 38 1 3.0786 -3.7508 -2.2473 39 1 3.3209 -2.5280 -4.3696 40 1 2.7336 -0.1415 -4.4914 41 1 2.0071 1.9161 -1.7338 42 1 -1.0271 1.1701 -3.1836 43 1 -0.9220 1.3631 -4.9502 44 1 -0.1664 -0.0424 -4.1619 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292705457.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:06:17 Heat of formation + Delta-G solvation = -84.706231 kcal Electronic energy + Delta-G solvation = -27302.804412 eV Core-core repulsion = 23347.255698 eV Total energy + Delta-G solvation = -3955.548714 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.56522 -39.02720 -37.61226 -36.47881 -35.57994 -35.45300 -33.46615 -31.76177 -30.73668 -30.09563 -29.87161 -28.94985 -25.81604 -24.18737 -23.21263 -21.93674 -20.64574 -20.02235 -19.78500 -18.28165 -18.06550 -17.03005 -16.82849 -16.55900 -15.92897 -15.74794 -15.31897 -15.03184 -14.82502 -14.48169 -14.40456 -14.11992 -13.82866 -13.73407 -13.52946 -13.28710 -13.12901 -12.75491 -12.59315 -12.53112 -12.43854 -12.24442 -12.08310 -11.87422 -11.68998 -11.40886 -11.19889 -11.17642 -10.92171 -10.88019 -10.62802 -9.97425 -9.69033 -9.27708 -9.19287 -9.04483 -8.93775 -8.59679 -8.32923 -5.97052 -4.01660 -0.32337 0.95816 0.97659 2.08235 3.18031 3.22246 3.32087 3.33537 3.38189 3.39503 3.45358 3.69027 4.21739 4.27382 4.43259 4.46485 4.55893 4.60623 4.74353 4.99021 5.07815 5.15159 5.17528 5.26452 5.37833 5.38719 5.54558 5.58122 5.69951 5.80558 5.89828 6.06593 6.13600 6.19114 6.20988 6.21661 6.39398 6.66936 6.67934 6.86360 7.72481 7.79725 7.84499 8.05762 8.37068 8.71512 9.06624 9.61907 11.13838 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.018992 B = 0.002367 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.933387 B =11827.085135 C =12745.543873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.182 3.818 3 H 0.093 0.907 4 N -0.740 5.740 5 C 0.511 3.489 6 O -0.532 6.532 7 C -0.130 4.130 8 C 0.038 3.962 9 C -0.529 4.529 10 H 0.055 0.945 11 C 0.058 3.942 12 N -0.890 5.890 13 Si 0.893 3.107 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.277 1.277 17 C -0.104 4.104 18 C -0.092 4.092 19 C -0.128 4.128 20 C -0.093 4.093 21 C -0.171 4.171 22 C 0.160 3.840 23 N -1.055 6.055 24 S 2.608 3.392 25 C -0.668 4.668 26 O -0.947 6.947 27 O -0.949 6.949 28 H 0.071 0.929 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.396 0.604 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.023 0.977 35 H 0.023 0.977 36 H 0.262 0.738 37 H 0.128 0.872 38 H 0.127 0.873 39 H 0.130 0.870 40 H 0.162 0.838 41 H 0.430 0.570 42 H 0.134 0.866 43 H 0.134 0.866 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.055 -8.593 -27.192 29.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.077 3.923 3 H 0.111 0.889 4 N -0.396 5.396 5 C 0.300 3.700 6 O -0.407 6.407 7 C -0.170 4.170 8 C 0.000 4.000 9 C -0.567 4.567 10 H 0.073 0.927 11 C -0.144 4.144 12 N -0.528 5.528 13 Si 0.721 3.279 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.203 1.203 17 C -0.108 4.108 18 C -0.111 4.111 19 C -0.147 4.147 20 C -0.112 4.112 21 C -0.192 4.192 22 C 0.063 3.937 23 N -0.806 5.806 24 S 2.701 3.299 25 C -0.819 4.819 26 O -0.938 6.938 27 O -0.939 6.939 28 H 0.090 0.910 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.233 0.767 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.042 0.958 35 H 0.042 0.958 36 H 0.071 0.929 37 H 0.146 0.854 38 H 0.145 0.855 39 H 0.147 0.853 40 H 0.179 0.821 41 H 0.268 0.732 42 H 0.152 0.848 43 H 0.152 0.848 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -5.979 -6.868 -27.695 29.154 hybrid contribution 0.084 -1.198 1.458 1.889 sum -5.894 -8.066 -26.237 28.075 Atomic orbital electron populations 1.22167 0.94314 1.02516 1.02619 1.19552 0.94085 0.96781 0.81904 0.88935 1.46405 1.69689 1.14024 1.09463 1.21611 0.76285 0.87661 0.84443 1.90673 1.48864 1.16325 1.84825 1.21878 1.00924 1.01077 0.93120 1.18888 0.98360 0.93307 0.89418 1.21178 1.44591 0.96310 0.94606 0.92673 1.25024 0.95533 0.94846 0.98957 1.69982 1.48001 1.08145 1.26669 0.86650 0.79353 0.79358 0.82544 1.20252 1.21284 1.20258 1.19923 1.02032 0.94420 0.94466 1.20836 0.98277 0.93207 0.98807 1.21191 1.00422 1.00375 0.92686 1.21048 0.98419 0.93612 0.98129 1.21960 1.01242 0.96506 0.99524 1.17165 0.99322 0.82469 0.94775 1.53485 1.75007 1.15324 1.36758 1.05119 0.76976 0.74480 0.73276 1.30464 1.22694 1.16505 1.12239 1.93662 1.86003 1.31470 1.82641 1.93558 1.59342 1.84422 1.56568 0.90951 0.92356 0.92045 0.76736 0.90210 0.90203 0.95825 0.95832 0.92870 0.85404 0.85490 0.85251 0.82058 0.73158 0.84759 0.84798 0.84922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 9.47 37.16 0.35 -1.27 16 2 C 0.18 2.09 2.47 -69.08 -0.17 1.92 16 3 H 0.09 1.21 6.16 -51.93 -0.32 0.89 16 4 N -0.74 -9.60 5.00 -54.93 -0.27 -9.87 16 5 C 0.51 9.34 7.79 -10.99 -0.09 9.25 16 6 O -0.53 -11.94 15.65 5.55 0.09 -11.85 16 7 C -0.13 -2.55 5.64 -27.88 -0.16 -2.71 16 8 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 9 C -0.53 -14.85 9.11 -34.44 -0.31 -15.16 16 10 H 0.06 1.45 7.74 -52.49 -0.41 1.05 16 11 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 12 N -0.89 -27.31 13.29 55.43 0.74 -26.58 16 13 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 14 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 15 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 17 C -0.10 -0.98 5.07 -104.42 -0.53 -1.51 16 18 C -0.09 -0.74 9.23 -39.61 -0.37 -1.11 16 19 C -0.13 -0.89 10.04 -39.55 -0.40 -1.29 16 20 C -0.09 -0.66 10.04 -39.61 -0.40 -1.06 16 21 C -0.17 -1.44 9.25 -39.38 -0.36 -1.80 16 22 C 0.16 1.43 6.10 -83.79 -0.51 0.92 16 23 N -1.06 -8.84 5.38 32.41 0.17 -8.66 16 24 S 2.61 20.39 5.87 -107.50 -0.63 19.76 16 25 C -0.67 -2.81 10.71 101.05 1.08 -1.72 16 26 O -0.95 -10.86 18.08 -57.54 -1.04 -11.90 16 27 O -0.95 -9.66 15.05 -57.54 -0.87 -10.53 16 28 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.40 3.99 6.21 -40.82 -0.25 3.74 16 32 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 33 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 34 H 0.02 0.69 8.10 -51.93 -0.42 0.26 16 35 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 36 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 37 H 0.13 0.85 6.07 -52.49 -0.32 0.53 16 38 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 39 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 40 H 0.16 1.38 5.18 -52.48 -0.27 1.11 16 41 H 0.43 3.61 7.42 -34.47 -0.26 3.35 16 42 H 0.13 0.45 8.14 -51.92 -0.42 0.03 16 43 H 0.13 0.33 8.14 -51.92 -0.42 -0.09 16 44 H 0.13 0.44 8.14 -51.92 -0.42 0.01 16 LS Contribution 378.36 15.07 5.70 5.70 Total: -1.00 -38.52 378.36 -9.24 -47.76 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -6.03 Total: 2.72 kcal Atomic # 6 Polarization: -11.00 SS G_CDS: -2.08 Total: -13.07 kcal Atomic # 7 Polarization: -45.75 SS G_CDS: 0.64 Total: -45.11 kcal Atomic # 8 Polarization: -32.46 SS G_CDS: -1.82 Total: -34.28 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: 20.39 SS G_CDS: -0.63 Total: 19.76 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -38.52 -9.24 -47.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292705457.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.944 kcal (2) G-P(sol) polarization free energy of solvation -38.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds