Wall clock time and date at job start Wed Apr 1 2020 00:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.47073 * 2 1 4 4 N 1.46496 * 109.47052 * 120.00093 * 2 1 3 5 5 C 1.34771 * 120.00303 * 274.99976 * 4 2 1 6 6 O 1.21290 * 120.00184 * 359.97438 * 5 4 2 7 7 C 1.50706 * 120.00262 * 180.02562 * 5 4 2 8 8 C 1.53003 * 109.47240 * 180.02562 * 7 5 4 9 9 C 1.50693 * 109.47114 * 179.97438 * 8 7 5 10 10 H 1.08001 * 119.99964 * 359.97438 * 9 8 7 11 11 C 1.37880 * 120.00225 * 180.02562 * 9 8 7 12 12 N 1.31511 * 119.99768 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99980 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46926 * 59.99902 * 13 11 9 15 15 H 1.48500 * 109.46752 * 179.97438 * 13 11 9 16 16 H 1.48494 * 109.47166 * 299.99691 * 13 11 9 17 17 C 1.50699 * 109.47376 * 240.00375 * 2 1 3 18 18 C 1.38122 * 120.03881 * 265.00086 * 17 2 1 19 19 C 1.38262 * 120.07626 * 180.02562 * 18 17 2 20 20 C 1.38302 * 120.14952 * 359.97438 * 19 18 17 21 21 C 1.38084 * 120.07517 * 0.02562 * 20 19 18 22 22 C 1.38896 * 120.03534 * 85.01976 * 17 2 1 23 23 N 1.39666 * 120.07786 * 359.95689 * 22 17 2 24 24 S 1.65595 * 120.00340 * 215.54229 * 23 22 17 25 25 C 1.81404 * 104.45077 * 60.01193 * 24 23 22 26 26 O 1.42099 * 104.28008 * 176.08093 * 24 23 22 27 27 O 1.42101 * 104.27950 * 303.93980 * 24 23 22 28 28 H 1.09004 * 109.47070 * 299.99717 * 1 2 3 29 29 H 1.09004 * 109.46674 * 59.99599 * 1 2 3 30 30 H 1.08994 * 109.46790 * 179.97438 * 1 2 3 31 31 H 0.97002 * 119.99490 * 95.00486 * 4 2 1 32 32 H 1.08996 * 109.46661 * 300.00128 * 7 5 4 33 33 H 1.09001 * 109.47137 * 59.99746 * 7 5 4 34 34 H 1.09003 * 109.47007 * 299.99943 * 8 7 5 35 35 H 1.09001 * 109.47384 * 59.99750 * 8 7 5 36 36 H 0.96996 * 119.99992 * 180.02562 * 12 11 9 37 37 H 1.08002 * 119.95798 * 0.04574 * 18 17 2 38 38 H 1.07998 * 119.92276 * 180.02562 * 19 18 17 39 39 H 1.07999 * 119.96597 * 179.74620 * 20 19 18 40 40 H 1.08005 * 120.03432 * 180.02562 * 21 20 19 41 41 H 0.97008 * 119.99965 * 35.54224 * 23 22 17 42 42 H 1.08999 * 109.46637 * 59.99776 * 25 24 23 43 43 H 1.09000 * 109.47243 * 180.02562 * 25 24 23 44 44 H 1.08999 * 109.46882 * 300.00578 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1471 -0.0184 2.3571 6 8 1.8591 1.1586 2.4116 7 6 2.6499 -0.7287 3.5875 8 6 2.7007 0.2542 4.7589 9 6 3.2029 -0.4562 5.9893 10 1 3.4598 -1.5041 5.9407 11 6 3.3335 0.2312 7.1773 12 7 3.0203 1.5071 7.2366 13 14 3.9555 -0.6497 8.7027 14 1 5.3172 -1.1834 8.4454 15 1 4.0048 0.3043 9.8396 16 1 3.0394 -1.7700 9.0354 17 6 2.0324 -0.7103 -1.2305 18 6 2.3611 -2.0505 -1.1694 19 6 2.8227 -2.7028 -2.2978 20 6 2.9563 -2.0165 -3.4911 21 6 2.6294 -0.6766 -3.5591 22 6 2.1658 -0.0179 -2.4272 23 7 1.8338 1.3371 -2.4926 24 16 1.1443 1.9554 -3.8654 25 6 -0.3966 1.0181 -4.0596 26 8 0.8661 3.3100 -3.5384 27 8 2.0626 1.6248 -4.8982 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 2.2491 -1.6318 1.1525 32 1 1.9777 -1.5510 3.8324 33 1 3.6493 -1.1205 3.3978 34 1 3.3727 1.0768 4.5141 35 1 1.7012 0.6457 4.9484 36 1 3.1125 1.9908 8.0723 37 1 2.2572 -2.5894 -0.2393 38 1 3.0786 -3.7508 -2.2473 39 1 3.3209 -2.5280 -4.3696 40 1 2.7336 -0.1415 -4.4914 41 1 2.0071 1.9161 -1.7338 42 1 -1.0271 1.1701 -3.1836 43 1 -0.9220 1.3631 -4.9502 44 1 -0.1664 -0.0424 -4.1619 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292705457.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:06:17 Heat of formation + Delta-G solvation = -114.315175 kcal Electronic energy + Delta-G solvation = -27304.088352 eV Core-core repulsion = 23347.255698 eV Total energy + Delta-G solvation = -3956.832655 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.41496 -40.25503 -38.35046 -37.20724 -36.62924 -36.12099 -35.52693 -33.28998 -32.14516 -30.78268 -30.35263 -29.64414 -27.71273 -25.11213 -24.14248 -23.29328 -21.70203 -21.19619 -20.56949 -19.16637 -18.76624 -18.57709 -17.70554 -17.49765 -17.24587 -16.54532 -16.49548 -16.42272 -16.09599 -15.61012 -15.24449 -14.95709 -14.84743 -14.37234 -14.22520 -14.15969 -14.12230 -13.97413 -13.76067 -13.40589 -13.31126 -13.26276 -13.16852 -13.16090 -12.77771 -12.67478 -12.50464 -12.31843 -11.96765 -11.94442 -11.88315 -11.63571 -11.52752 -11.31062 -10.72812 -10.55511 -10.19341 -9.79383 -9.23092 -8.17120 -6.31148 -0.89686 0.33731 0.37703 1.42559 1.46980 1.47420 1.54663 1.72958 2.20646 2.45058 2.65647 2.76247 3.11546 3.15911 3.50819 3.80667 3.93039 4.03113 4.06022 4.11948 4.15162 4.26692 4.33633 4.50531 4.53462 4.58149 4.64715 4.68645 4.86221 4.91524 4.95926 5.08397 5.11316 5.21819 5.32828 5.39768 5.50775 5.63567 5.64978 5.65309 5.76046 5.86772 6.07522 6.18691 6.59871 6.87609 7.35080 7.39358 8.95294 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.018992 B = 0.002367 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.933387 B =11827.085135 C =12745.543873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.180 3.820 3 H 0.070 0.930 4 N -0.714 5.714 5 C 0.513 3.487 6 O -0.585 6.585 7 C -0.120 4.120 8 C 0.043 3.957 9 C -0.543 4.543 10 H 0.077 0.923 11 C -0.008 4.008 12 N -0.938 5.938 13 Si 0.973 3.027 14 H -0.263 1.263 15 H -0.289 1.289 16 H -0.261 1.261 17 C -0.116 4.116 18 C -0.095 4.095 19 C -0.124 4.124 20 C -0.089 4.089 21 C -0.182 4.182 22 C 0.154 3.846 23 N -1.060 6.060 24 S 2.609 3.391 25 C -0.647 4.647 26 O -0.992 6.992 27 O -0.979 6.979 28 H 0.041 0.959 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.414 0.586 32 H 0.107 0.893 33 H 0.103 0.897 34 H -0.020 1.020 35 H -0.018 1.018 36 H 0.262 0.738 37 H 0.143 0.857 38 H 0.154 0.846 39 H 0.153 0.847 40 H 0.158 0.842 41 H 0.426 0.574 42 H 0.149 0.851 43 H 0.158 0.842 44 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.163 -12.633 -28.281 31.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.075 3.925 3 H 0.088 0.912 4 N -0.370 5.370 5 C 0.301 3.699 6 O -0.464 6.464 7 C -0.159 4.159 8 C 0.005 3.995 9 C -0.581 4.581 10 H 0.095 0.905 11 C -0.205 4.205 12 N -0.578 5.578 13 Si 0.797 3.203 14 H -0.187 1.187 15 H -0.215 1.215 16 H -0.186 1.186 17 C -0.120 4.120 18 C -0.114 4.114 19 C -0.143 4.143 20 C -0.107 4.107 21 C -0.203 4.203 22 C 0.057 3.943 23 N -0.809 5.809 24 S 2.707 3.293 25 C -0.801 4.801 26 O -0.983 6.983 27 O -0.969 6.969 28 H 0.060 0.940 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.254 0.746 32 H 0.125 0.875 33 H 0.122 0.878 34 H -0.001 1.001 35 H 0.001 0.999 36 H 0.071 0.929 37 H 0.160 0.840 38 H 0.172 0.828 39 H 0.171 0.829 40 H 0.175 0.825 41 H 0.264 0.736 42 H 0.167 0.833 43 H 0.176 0.824 44 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -6.047 -10.961 -28.834 31.434 hybrid contribution 0.085 0.016 1.677 1.680 sum -5.962 -10.945 -27.157 29.880 Atomic orbital electron populations 1.22147 0.93285 1.03585 1.02340 1.19615 0.94981 0.95904 0.81990 0.91192 1.46089 1.67820 1.14645 1.08405 1.21328 0.76053 0.86893 0.85577 1.90663 1.51475 1.18559 1.85742 1.21644 1.03187 0.99810 0.91309 1.18674 0.94760 0.93665 0.92395 1.21700 1.43973 0.97340 0.95108 0.90523 1.26142 0.95661 0.95559 1.03137 1.70171 1.49626 1.10331 1.27689 0.85384 0.79384 0.78126 0.77415 1.18727 1.21485 1.18570 1.19714 1.03867 0.95103 0.93340 1.21061 0.97835 0.92546 0.99990 1.21487 0.99306 1.01566 0.91930 1.21388 0.97108 0.93017 0.99216 1.22034 1.01837 0.97301 0.99126 1.17255 0.99636 0.82393 0.94968 1.53452 1.75599 1.15357 1.36478 1.04895 0.77980 0.73986 0.72418 1.30290 1.19273 1.16405 1.14159 1.93603 1.86815 1.34733 1.83152 1.93514 1.61478 1.84609 1.57285 0.94006 0.89927 0.90198 0.74606 0.87529 0.87840 1.00132 0.99912 0.92905 0.83971 0.82843 0.82915 0.82497 0.73612 0.83284 0.82392 0.83139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.06 9.47 71.98 0.68 -2.38 16 2 C 0.18 4.05 2.47 44.25 0.11 4.16 16 3 H 0.07 1.92 6.16 -2.38 -0.01 1.90 16 4 N -0.71 -17.79 5.00 -446.09 -2.23 -20.02 16 5 C 0.51 19.02 7.79 87.66 0.68 19.70 16 6 O -0.59 -27.84 15.65 -3.06 -0.05 -27.88 16 7 C -0.12 -4.65 5.64 29.85 0.17 -4.48 16 8 C 0.04 2.36 4.26 29.85 0.13 2.48 16 9 C -0.54 -30.68 9.11 25.60 0.23 -30.44 16 10 H 0.08 3.90 7.74 -2.91 -0.02 3.88 16 11 C -0.01 -0.44 5.46 84.66 0.46 0.02 16 12 N -0.94 -59.65 13.29 21.45 0.28 -59.36 16 13 Si 0.97 44.07 29.54 68.60 2.03 46.10 16 14 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 15 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 16 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 17 C -0.12 -1.98 5.07 -19.73 -0.10 -2.08 16 18 C -0.10 -1.24 9.23 22.25 0.21 -1.03 16 19 C -0.12 -1.25 10.04 22.29 0.22 -1.02 16 20 C -0.09 -0.98 10.04 22.25 0.22 -0.75 16 21 C -0.18 -2.73 9.25 22.40 0.21 -2.52 16 22 C 0.15 2.59 6.10 38.22 0.23 2.82 16 23 N -1.06 -18.00 5.38 -51.37 -0.28 -18.28 16 24 S 2.61 40.83 5.87 -56.49 -0.33 40.50 16 25 C -0.65 -3.78 10.71 113.37 1.21 -2.56 16 26 O -0.99 -23.92 18.08 -127.65 -2.31 -26.23 16 27 O -0.98 -20.15 15.05 -127.65 -1.92 -22.07 16 28 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.41 7.25 6.21 -92.71 -0.58 6.67 16 32 H 0.11 3.56 8.14 -2.39 -0.02 3.54 16 33 H 0.10 3.52 8.14 -2.39 -0.02 3.50 16 34 H -0.02 -1.24 8.10 -2.39 -0.02 -1.26 16 35 H -0.02 -1.10 8.10 -2.39 -0.02 -1.12 16 36 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 37 H 0.14 1.34 6.07 -2.91 -0.02 1.32 16 38 H 0.15 0.75 8.06 -2.91 -0.02 0.72 16 39 H 0.15 0.93 8.06 -2.91 -0.02 0.90 16 40 H 0.16 2.53 5.18 -2.91 -0.02 2.51 16 41 H 0.43 7.81 7.42 -96.74 -0.72 7.09 16 42 H 0.15 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.16 0.28 8.14 -2.39 -0.02 0.26 16 44 H 0.15 0.47 8.14 -2.39 -0.02 0.45 16 Total: -1.00 -88.93 378.36 -0.38 -89.32 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -0.25 Total: 16.02 kcal Atomic # 6 Polarization: -22.77 SS G_CDS: 4.67 Total: -18.09 kcal Atomic # 7 Polarization: -95.44 SS G_CDS: -2.22 Total: -97.66 kcal Atomic # 8 Polarization: -71.91 SS G_CDS: -4.28 Total: -76.18 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Atomic # 16 Polarization: 40.83 SS G_CDS: -0.33 Total: 40.50 kcal Total: -88.93 -0.38 -89.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292705457.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.999 kcal (2) G-P(sol) polarization free energy of solvation -88.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds