Wall clock time and date at job start Wed Apr 1 2020 00:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47166 * 2 1 4 4 N 1.46502 * 109.46944 * 240.00067 * 2 1 3 5 5 C 1.34776 * 120.00080 * 82.13290 * 4 2 1 6 6 O 1.21285 * 120.00062 * 359.97438 * 5 4 2 7 7 C 1.50704 * 120.00022 * 179.97438 * 5 4 2 8 8 C 1.52996 * 109.46891 * 180.02562 * 7 5 4 9 9 C 1.50701 * 109.47216 * 180.02562 * 8 7 5 10 10 H 1.08005 * 119.99515 * 0.02562 * 9 8 7 11 11 C 1.37869 * 120.00650 * 179.97438 * 9 8 7 12 12 N 1.31525 * 119.99847 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00496 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.47125 * 90.00345 * 13 11 9 15 15 H 1.48502 * 109.47444 * 210.00044 * 13 11 9 16 16 H 1.48494 * 109.47209 * 330.00449 * 13 11 9 17 17 C 1.50698 * 109.47050 * 120.00054 * 2 1 3 18 18 C 1.38122 * 120.03688 * 92.37718 * 17 2 1 19 19 C 1.38268 * 120.07392 * 180.27356 * 18 17 2 20 20 C 1.38308 * 120.14942 * 359.74103 * 19 18 17 21 21 C 1.38082 * 120.07187 * 359.97438 * 20 19 18 22 22 C 1.38886 * 120.03738 * 272.11773 * 17 2 1 23 23 N 1.39672 * 120.07603 * 359.97438 * 22 17 2 24 24 S 1.65597 * 120.00211 * 213.87766 * 23 22 17 25 25 C 1.81401 * 104.45298 * 59.97159 * 24 23 22 26 26 O 1.42100 * 104.27736 * 176.04443 * 24 23 22 27 27 O 1.42102 * 104.27744 * 303.89723 * 24 23 22 28 28 H 1.09000 * 109.47034 * 300.00189 * 1 2 3 29 29 H 1.09003 * 109.47441 * 60.00040 * 1 2 3 30 30 H 1.08997 * 109.47166 * 180.02562 * 1 2 3 31 31 H 0.97001 * 119.99671 * 262.13246 * 4 2 1 32 32 H 1.08996 * 109.47346 * 300.00073 * 7 5 4 33 33 H 1.09005 * 109.46685 * 60.00342 * 7 5 4 34 34 H 1.09007 * 109.47357 * 299.99738 * 8 7 5 35 35 H 1.08993 * 109.47518 * 59.99974 * 8 7 5 36 36 H 0.96990 * 120.00047 * 179.97438 * 12 11 9 37 37 H 1.08007 * 119.96887 * 0.02562 * 18 17 2 38 38 H 1.08002 * 119.92717 * 179.71953 * 19 18 17 39 39 H 1.07996 * 119.96358 * 179.97438 * 20 19 18 40 40 H 1.08003 * 120.03422 * 180.02562 * 21 20 19 41 41 H 0.97003 * 119.99784 * 33.87741 * 23 22 17 42 42 H 1.08997 * 109.46912 * 59.99510 * 25 24 23 43 43 H 1.08997 * 109.47271 * 179.97438 * 25 24 23 44 44 H 1.09004 * 109.46813 * 300.00210 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.0923 -0.0336 -2.3707 6 8 1.7542 1.1293 -2.4374 7 6 2.5951 -0.7439 -3.6010 8 6 2.5794 0.2205 -4.7887 9 6 3.0817 -0.4899 -6.0193 10 1 3.3816 -1.5258 -5.9601 11 6 3.1573 0.1821 -7.2207 12 7 2.7915 1.4434 -7.2929 13 14 3.7805 -0.6983 -8.7458 14 1 2.6382 -1.3292 -9.4547 15 1 4.4425 0.2797 -9.6462 16 1 4.7560 -1.7452 -8.3491 17 6 2.0323 -0.7104 1.2304 18 6 2.3095 -2.0627 1.1833 19 6 2.7650 -2.7164 2.3133 20 6 2.9498 -2.0182 3.4928 21 6 2.6802 -0.6649 3.5452 22 6 2.2221 -0.0050 2.4117 23 7 1.9485 1.3637 2.4613 24 16 2.8627 2.3567 3.4207 25 6 4.5514 2.1716 2.7846 26 8 2.3673 3.6604 3.1483 27 8 2.7534 1.7879 4.7183 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 2.2884 -1.6207 -1.1429 32 1 3.6138 -1.0914 -3.4291 33 1 1.9516 -1.5969 -3.8166 34 1 1.5608 0.5684 -4.9609 35 1 3.2230 1.0732 -4.5730 36 1 2.8451 1.9163 -8.1380 37 1 2.1665 -2.6110 0.2638 38 1 2.9767 -3.7748 2.2749 39 1 3.3053 -2.5319 4.3737 40 1 2.8250 -0.1202 4.4665 41 1 1.2229 1.7327 1.9337 42 1 4.5810 2.4763 1.7386 43 1 5.2289 2.7982 3.3647 44 1 4.8588 1.1291 2.8682 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292705467.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:06:20 Heat of formation + Delta-G solvation = -85.972386 kcal Electronic energy + Delta-G solvation = -27354.348864 eV Core-core repulsion = 23398.745245 eV Total energy + Delta-G solvation = -3955.603619 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.56737 -39.03733 -37.58984 -36.45985 -35.58315 -35.45118 -33.47903 -31.77692 -30.74923 -29.97155 -29.87270 -28.96404 -25.82168 -24.15646 -23.21515 -21.95984 -20.67743 -20.02120 -19.74850 -18.22388 -18.05444 -17.05526 -16.78693 -16.55023 -15.92344 -15.78775 -15.33331 -14.97515 -14.92535 -14.43036 -14.40161 -14.01402 -13.75693 -13.69467 -13.60418 -13.38672 -12.94338 -12.75591 -12.57155 -12.48682 -12.40269 -12.25582 -12.07899 -11.89631 -11.69026 -11.38908 -11.20862 -11.17936 -10.95098 -10.87093 -10.61876 -9.99275 -9.70305 -9.29745 -9.18986 -9.04052 -8.94070 -8.58689 -8.34424 -5.98520 -4.03101 -0.28386 0.95259 0.97801 2.09806 3.17526 3.24160 3.30557 3.31345 3.37540 3.39690 3.46420 3.73805 4.26412 4.30681 4.45253 4.48682 4.56047 4.61992 4.74571 5.01261 5.08992 5.18641 5.26313 5.29125 5.36481 5.42083 5.50047 5.61003 5.70918 5.83823 5.89988 6.10374 6.13967 6.17980 6.20018 6.21264 6.37931 6.66189 6.68033 6.85012 7.71408 7.79397 7.82931 8.04278 8.35653 8.70724 9.05384 9.60633 11.12374 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016107 B = 0.002501 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.994050 B =11193.938079 C =12061.304890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.180 3.820 3 H 0.093 0.907 4 N -0.739 5.739 5 C 0.511 3.489 6 O -0.532 6.532 7 C -0.130 4.130 8 C 0.037 3.963 9 C -0.528 4.528 10 H 0.055 0.945 11 C 0.058 3.942 12 N -0.889 5.889 13 Si 0.893 3.107 14 H -0.281 1.281 15 H -0.286 1.286 16 H -0.274 1.274 17 C -0.105 4.105 18 C -0.091 4.091 19 C -0.129 4.129 20 C -0.092 4.092 21 C -0.174 4.174 22 C 0.161 3.839 23 N -1.055 6.055 24 S 2.608 3.392 25 C -0.667 4.667 26 O -0.948 6.948 27 O -0.950 6.950 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.396 0.604 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.023 0.977 35 H 0.023 0.977 36 H 0.261 0.739 37 H 0.129 0.871 38 H 0.127 0.873 39 H 0.130 0.870 40 H 0.162 0.838 41 H 0.429 0.571 42 H 0.136 0.864 43 H 0.134 0.866 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.288 -6.829 25.714 26.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.075 3.925 3 H 0.111 0.889 4 N -0.395 5.395 5 C 0.300 3.700 6 O -0.407 6.407 7 C -0.170 4.170 8 C 0.000 4.000 9 C -0.566 4.566 10 H 0.074 0.926 11 C -0.144 4.144 12 N -0.528 5.528 13 Si 0.721 3.279 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.199 1.199 17 C -0.110 4.110 18 C -0.110 4.110 19 C -0.148 4.148 20 C -0.111 4.111 21 C -0.195 4.195 22 C 0.064 3.936 23 N -0.804 5.804 24 S 2.702 3.298 25 C -0.818 4.818 26 O -0.938 6.938 27 O -0.940 6.940 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.232 0.768 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.042 0.958 35 H 0.042 0.958 36 H 0.071 0.929 37 H 0.146 0.854 38 H 0.145 0.855 39 H 0.148 0.852 40 H 0.180 0.820 41 H 0.267 0.733 42 H 0.154 0.846 43 H 0.152 0.848 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.834 -5.232 26.340 26.867 hybrid contribution 0.575 -1.076 -1.602 2.014 sum 1.408 -6.308 24.738 25.568 Atomic orbital electron populations 1.22195 0.94250 1.02701 1.02777 1.19608 0.94204 0.96804 0.81896 0.88904 1.46404 1.69025 1.15509 1.08578 1.21605 0.76584 0.87418 0.84433 1.90673 1.47682 1.17111 1.85208 1.21879 1.00939 1.01040 0.93156 1.18894 0.98405 0.93483 0.89229 1.21214 1.43926 0.97601 0.93861 0.92626 1.25026 0.95503 0.94855 0.99004 1.69996 1.47587 1.09285 1.25921 0.86592 0.78959 0.79368 0.83019 1.20670 1.21223 1.19897 1.19879 1.02660 0.94748 0.93700 1.20844 0.98251 0.93093 0.98837 1.21191 1.00441 1.00305 0.92875 1.21043 0.98452 0.93422 0.98148 1.21952 1.03575 0.96133 0.97850 1.17193 1.00350 0.82570 0.93464 1.53499 1.46793 1.15410 1.64699 1.05109 0.77178 0.73125 0.74398 1.30442 1.24429 1.12383 1.14566 1.93659 1.78010 1.37143 1.85001 1.93553 1.85679 1.77629 1.37107 0.92070 0.90870 0.92034 0.76763 0.90238 0.90189 0.95812 0.95838 0.92931 0.85376 0.85491 0.85244 0.82039 0.73332 0.84554 0.84767 0.84937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 9.39 37.16 0.35 -1.43 16 2 C 0.18 2.08 2.17 -69.08 -0.15 1.93 16 3 H 0.09 1.19 6.80 -51.93 -0.35 0.83 16 4 N -0.74 -9.49 5.04 -54.93 -0.28 -9.77 16 5 C 0.51 9.23 7.76 -10.98 -0.09 9.14 16 6 O -0.53 -11.82 15.59 5.55 0.09 -11.74 16 7 C -0.13 -2.53 5.64 -27.88 -0.16 -2.68 16 8 C 0.04 0.98 4.26 -27.88 -0.12 0.87 16 9 C -0.53 -14.72 9.11 -34.44 -0.31 -15.04 16 10 H 0.06 1.46 7.74 -52.48 -0.41 1.05 16 11 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 12 N -0.89 -27.15 13.29 55.43 0.74 -26.41 16 13 Si 0.89 21.42 29.54 -169.99 -5.02 16.39 16 14 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 15 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 16 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 17 C -0.11 -0.99 5.06 -104.43 -0.53 -1.52 16 18 C -0.09 -0.73 9.18 -39.61 -0.36 -1.10 16 19 C -0.13 -0.89 10.04 -39.54 -0.40 -1.29 16 20 C -0.09 -0.65 10.04 -39.61 -0.40 -1.05 16 21 C -0.17 -1.45 9.24 -39.38 -0.36 -1.82 16 22 C 0.16 1.45 6.12 -83.79 -0.51 0.93 16 23 N -1.05 -8.93 5.14 32.41 0.17 -8.77 16 24 S 2.61 21.71 5.85 -107.50 -0.63 21.08 16 25 C -0.67 -3.82 10.71 101.05 1.08 -2.74 16 26 O -0.95 -11.30 18.08 -57.54 -1.04 -12.34 16 27 O -0.95 -9.76 15.05 -57.54 -0.87 -10.62 16 28 H 0.06 0.56 7.61 -51.93 -0.40 0.17 16 29 H 0.07 0.98 8.03 -51.93 -0.42 0.56 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.40 3.95 6.26 -40.82 -0.26 3.69 16 32 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 33 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 34 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 35 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 36 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 37 H 0.13 0.85 6.22 -52.48 -0.33 0.53 16 38 H 0.13 0.62 8.06 -52.49 -0.42 0.19 16 39 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 40 H 0.16 1.37 5.15 -52.48 -0.27 1.10 16 41 H 0.43 3.43 7.38 -34.47 -0.25 3.17 16 42 H 0.14 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.13 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.13 0.64 8.14 -51.92 -0.42 0.21 16 LS Contribution 377.73 15.07 5.69 5.69 Total: -1.00 -38.09 377.73 -9.24 -47.33 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -6.04 Total: 3.38 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: -2.05 Total: -14.22 kcal Atomic # 7 Polarization: -45.58 SS G_CDS: 0.63 Total: -44.95 kcal Atomic # 8 Polarization: -32.88 SS G_CDS: -1.82 Total: -34.70 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: 21.71 SS G_CDS: -0.63 Total: 21.08 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -38.09 -9.24 -47.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292705467.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.645 kcal (2) G-P(sol) polarization free energy of solvation -38.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds