Wall clock time and date at job start Wed Apr 1 2020 00:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.56321 * 2 1 4 4 C 1.53535 * 109.57277 * 239.63412 * 2 1 3 5 5 N 1.47335 * 107.53843 * 182.02156 * 4 2 1 6 6 S 1.65595 * 121.18152 * 221.74762 * 5 4 2 7 7 O 1.42094 * 104.28088 * 19.30689 * 6 5 4 8 8 O 1.42099 * 104.27750 * 147.16890 * 6 5 4 9 9 C 1.81406 * 104.44802 * 263.23852 * 6 5 4 10 10 C 1.53000 * 109.47133 * 180.02562 * 9 6 5 11 11 C 1.53001 * 109.46873 * 299.99711 * 10 9 6 12 12 C 1.52992 * 109.47164 * 59.99858 * 10 9 6 13 13 C 1.50705 * 109.46901 * 180.02562 * 10 9 6 14 14 H 1.07997 * 120.00040 * 355.66277 * 13 10 9 15 15 C 1.37870 * 119.99660 * 175.65781 * 13 10 9 16 16 N 1.31518 * 120.00212 * 198.35076 * 15 13 10 17 17 Si 1.86804 * 120.00210 * 18.35858 * 15 13 10 18 18 H 1.48496 * 109.47309 * 84.27566 * 17 15 13 19 19 H 1.48496 * 109.47115 * 204.27724 * 17 15 13 20 20 H 1.48497 * 109.46993 * 324.27384 * 17 15 13 21 21 C 1.40248 * 117.68906 * 41.50419 * 5 4 2 22 22 C 1.38655 * 120.34545 * 166.22645 * 21 5 4 23 23 C 1.38875 * 118.23681 * 179.89570 * 22 21 5 24 24 C 1.38053 * 119.15000 * 0.25897 * 23 22 21 25 25 N 1.31936 * 121.19899 * 0.11021 * 24 23 22 26 26 C 1.32408 * 121.81497 * 359.94631 * 25 24 23 27 27 O 1.35821 * 119.53073 * 179.72906 * 26 25 24 28 28 H 1.08999 * 109.47194 * 299.75462 * 1 2 3 29 29 H 1.08998 * 109.47081 * 59.76290 * 1 2 3 30 30 H 1.09002 * 109.46599 * 179.75584 * 1 2 3 31 31 H 1.08998 * 109.84347 * 301.53040 * 4 2 1 32 32 H 1.09002 * 109.84146 * 62.50815 * 4 2 1 33 33 H 1.09002 * 109.47035 * 299.99954 * 9 6 5 34 34 H 1.09000 * 109.46973 * 59.99512 * 9 6 5 35 35 H 1.09000 * 109.47032 * 68.58319 * 11 10 9 36 36 H 1.08999 * 109.47186 * 188.58231 * 11 10 9 37 37 H 1.09001 * 109.47240 * 308.58193 * 11 10 9 38 38 H 1.09002 * 109.47303 * 60.00152 * 12 10 9 39 39 H 1.08999 * 109.47032 * 180.02562 * 12 10 9 40 40 H 1.09001 * 109.47392 * 299.99607 * 12 10 9 41 41 H 0.96995 * 120.00174 * 180.02562 * 16 15 13 42 42 H 1.07995 * 120.88521 * 0.17057 * 22 21 5 43 43 H 1.07995 * 120.42383 * 180.23575 * 23 22 21 44 44 H 1.08007 * 119.40109 * 180.09352 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8951 1.0271 0.0000 4 6 2.0444 -0.7313 -1.2482 5 7 3.5160 -0.7478 -1.1782 6 16 4.4414 -0.4626 -2.5215 7 8 3.5601 0.1955 -3.4211 8 8 5.5976 0.1923 -2.0180 9 6 4.8641 -2.1151 -3.1392 10 6 5.7293 -1.9845 -4.3943 11 6 4.9550 -1.2206 -5.4703 12 6 7.0122 -1.2243 -4.0525 13 6 6.0798 -3.3574 -4.9077 14 1 5.7810 -4.2341 -4.3524 15 6 6.7819 -3.4940 -6.0864 16 7 6.7809 -4.6449 -6.7228 17 14 7.7349 -2.0444 -6.7793 18 1 9.0727 -1.9794 -6.1380 19 1 7.8966 -2.2138 -8.2457 20 1 6.9929 -0.7877 -6.5050 21 6 4.1064 -1.0083 0.0670 22 6 5.4551 -1.3187 0.1515 23 6 5.9948 -1.5666 1.4069 24 6 5.1754 -1.5012 2.5160 25 7 3.8935 -1.2104 2.4025 26 6 3.3342 -0.9677 1.2271 27 8 2.0087 -0.6783 1.1634 28 1 -0.3633 0.5100 0.8922 29 1 -0.3633 0.5175 -0.8878 30 1 -0.3632 -1.0277 -0.0044 31 1 1.6632 -1.7523 -1.2622 32 1 1.7224 -0.2029 -2.1455 33 1 5.4161 -2.6592 -2.3728 34 1 3.9500 -2.6569 -3.3822 35 1 4.8336 -0.1821 -5.1622 36 1 5.5055 -1.2588 -6.4102 37 1 3.9741 -1.6766 -5.6049 38 1 7.5638 -1.7686 -3.2860 39 1 7.6284 -1.1309 -4.9468 40 1 6.7583 -0.2313 -3.6815 41 1 7.2752 -4.7411 -7.5519 42 1 6.0706 -1.3621 -0.7348 43 1 7.0420 -1.8079 1.5140 44 1 5.5912 -1.6918 3.4944 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295168243.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:02 Heat of formation + Delta-G solvation = -61.338120 kcal Electronic energy + Delta-G solvation = -29371.120450 eV Core-core repulsion = 25416.585052 eV Total energy + Delta-G solvation = -3954.535397 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.24797 -39.62948 -38.59283 -38.49296 -37.45626 -37.05754 -34.09422 -33.77028 -32.95150 -30.13122 -29.21154 -28.19302 -27.34350 -27.10154 -25.07683 -24.61461 -22.06946 -21.62756 -20.44261 -19.75755 -19.22746 -18.47713 -18.22164 -17.68211 -17.31112 -17.05410 -16.78390 -16.44132 -16.17618 -15.48158 -15.25572 -15.14013 -15.04425 -14.88470 -14.48331 -14.38594 -14.28519 -14.17936 -13.58965 -13.51258 -13.41621 -13.36339 -13.16147 -13.08560 -12.87631 -12.81195 -12.67737 -12.35091 -12.29390 -12.05773 -11.94245 -11.87575 -11.73375 -11.06232 -10.72184 -10.61566 -10.50302 -10.26198 -9.16835 -8.38245 -6.36205 -1.09228 0.05025 0.12339 1.20261 1.29122 1.34694 1.41682 1.68972 2.28007 2.46459 2.73131 2.80302 2.95769 3.09345 3.24135 3.52083 3.65491 3.72174 3.84115 3.86967 3.95957 4.02979 4.13644 4.18081 4.39408 4.42700 4.46327 4.51201 4.55351 4.64042 4.67792 4.77154 4.81986 4.88843 4.91525 5.00089 5.08922 5.18836 5.26532 5.32439 5.47310 5.48847 5.59160 5.98395 6.22423 6.65718 6.93330 7.27295 8.77455 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017363 B = 0.004138 C = 0.003718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.261875 B = 6765.445060 C = 7529.878696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.078 3.922 3 H 0.079 0.921 4 C 0.059 3.941 5 N -0.941 5.941 6 S 2.601 3.399 7 O -0.960 6.960 8 O -0.962 6.962 9 C -0.575 4.575 10 C 0.048 3.952 11 C -0.180 4.180 12 C -0.187 4.187 13 C -0.508 4.508 14 H 0.049 0.951 15 C 0.032 3.968 16 N -0.930 5.930 17 Si 0.906 3.094 18 H -0.274 1.274 19 H -0.303 1.303 20 H -0.216 1.216 21 C 0.050 3.950 22 C -0.114 4.114 23 C -0.157 4.157 24 C 0.112 3.888 25 N -0.498 5.498 26 C 0.286 3.714 27 O -0.308 6.308 28 H 0.080 0.920 29 H 0.109 0.891 30 H 0.078 0.922 31 H 0.108 0.892 32 H 0.135 0.865 33 H 0.140 0.860 34 H 0.142 0.858 35 H 0.051 0.949 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.048 0.952 40 H 0.062 0.938 41 H 0.267 0.733 42 H 0.147 0.853 43 H 0.179 0.821 44 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.581 9.063 15.678 20.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.020 3.980 3 H 0.096 0.904 4 C -0.065 4.065 5 N -0.767 5.767 6 S 2.701 3.299 7 O -0.951 6.951 8 O -0.953 6.953 9 C -0.708 4.708 10 C 0.045 3.955 11 C -0.237 4.237 12 C -0.244 4.244 13 C -0.547 4.547 14 H 0.067 0.933 15 C -0.168 4.168 16 N -0.568 5.568 17 Si 0.734 3.266 18 H -0.200 1.200 19 H -0.231 1.231 20 H -0.140 1.140 21 C -0.049 4.049 22 C -0.143 4.143 23 C -0.178 4.178 24 C -0.045 4.045 25 N -0.218 5.218 26 C 0.104 3.896 27 O -0.218 6.218 28 H 0.099 0.901 29 H 0.128 0.872 30 H 0.097 0.903 31 H 0.127 0.873 32 H 0.153 0.847 33 H 0.158 0.842 34 H 0.160 0.840 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.066 0.934 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.164 0.836 43 H 0.196 0.804 44 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -9.099 9.884 15.954 20.857 hybrid contribution 1.336 -0.573 -1.727 2.257 sum -7.763 9.311 14.227 18.692 Atomic orbital electron populations 1.21861 0.87579 1.04976 1.05196 1.23130 0.98374 0.94782 0.81702 0.90351 1.22991 0.76484 1.04906 1.02081 1.56013 1.17434 1.83250 1.19961 1.05545 0.73436 0.78414 0.72482 1.93534 1.65385 1.72986 1.63173 1.93549 1.49966 1.73307 1.78442 1.30405 1.10981 1.20558 1.08811 1.18210 0.91375 0.96063 0.89810 1.22783 1.01457 0.98610 1.00894 1.22829 0.99651 1.00022 1.01884 1.20807 1.36272 0.90775 1.06808 0.93300 1.25622 0.96992 0.97792 0.96345 1.70082 1.41973 1.27670 1.17065 0.86934 0.80350 0.83206 0.76106 1.20013 1.23105 1.13975 1.18482 0.94492 1.06229 0.85656 1.21807 0.92233 0.98293 1.01923 1.22338 1.03554 1.00948 0.90920 1.23159 0.85989 0.94332 1.01062 1.66946 1.15020 1.15930 1.23926 1.19132 0.84960 0.97771 0.87739 1.85912 1.18418 1.73526 1.43899 0.90106 0.87246 0.90274 0.87340 0.84740 0.84187 0.83969 0.92987 0.92014 0.91550 0.90728 0.93394 0.91970 0.92382 0.83565 0.80353 0.77771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.58 71.98 0.69 -0.97 16 2 C 0.08 1.55 3.57 30.78 0.11 1.66 16 3 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 4 C 0.06 1.25 6.02 86.40 0.52 1.77 16 5 N -0.94 -25.88 3.25 -335.98 -1.09 -26.97 16 6 S 2.60 83.94 3.90 -56.49 -0.22 83.72 16 7 O -0.96 -33.23 14.31 -127.65 -1.83 -35.05 16 8 O -0.96 -34.16 12.75 -127.65 -1.63 -35.79 16 9 C -0.57 -19.73 4.99 71.98 0.36 -19.37 16 10 C 0.05 2.05 0.52 -52.93 -0.03 2.02 16 11 C -0.18 -7.50 6.98 71.98 0.50 -6.99 16 12 C -0.19 -7.58 7.36 71.98 0.53 -7.05 16 13 C -0.51 -26.48 8.61 25.60 0.22 -26.26 16 14 H 0.05 2.77 7.99 -2.91 -0.02 2.75 16 15 C 0.03 1.76 5.26 84.65 0.45 2.21 16 16 N -0.93 -55.04 13.96 21.45 0.30 -54.74 16 17 Si 0.91 41.79 22.89 68.60 1.57 43.36 16 18 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 19 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 20 H -0.22 -8.97 4.60 99.48 0.46 -8.51 16 21 C 0.05 1.44 6.23 38.18 0.24 1.68 16 22 C -0.11 -3.05 8.64 22.52 0.19 -2.85 16 23 C -0.16 -3.19 10.12 22.38 0.23 -2.96 16 24 C 0.11 2.21 11.15 84.63 0.94 3.16 16 25 N -0.50 -13.36 10.38 -308.18 -3.20 -16.56 16 26 C 0.29 8.17 7.58 84.89 0.64 8.81 16 27 O -0.31 -8.04 10.05 -91.54 -0.92 -8.96 16 28 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.13 2.54 6.82 -2.39 -0.02 2.53 16 33 H 0.14 4.39 7.38 -2.39 -0.02 4.37 16 34 H 0.14 4.48 8.14 -2.39 -0.02 4.46 16 35 H 0.05 1.99 6.10 -2.39 -0.01 1.97 16 36 H 0.06 2.66 3.89 -2.39 -0.01 2.65 16 37 H 0.07 2.62 8.13 -2.39 -0.02 2.60 16 38 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 39 H 0.05 2.00 2.69 -2.39 -0.01 1.99 16 40 H 0.06 2.32 5.46 -2.39 -0.01 2.31 16 41 H 0.27 14.96 8.31 -92.71 -0.77 14.18 16 42 H 0.15 4.04 5.06 -2.91 -0.01 4.02 16 43 H 0.18 2.34 8.06 -2.91 -0.02 2.31 16 44 H 0.21 2.24 8.06 -2.91 -0.02 2.22 16 Total: -1.00 -71.89 341.83 -0.64 -72.52 By element: Atomic # 1 Polarization: 22.85 SS G_CDS: 0.78 Total: 23.63 kcal Atomic # 6 Polarization: -50.75 SS G_CDS: 5.60 Total: -45.15 kcal Atomic # 7 Polarization: -94.28 SS G_CDS: -3.99 Total: -98.27 kcal Atomic # 8 Polarization: -75.43 SS G_CDS: -4.37 Total: -79.81 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 1.57 Total: 43.36 kcal Atomic # 16 Polarization: 83.94 SS G_CDS: -0.22 Total: 83.72 kcal Total: -71.89 -0.64 -72.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295168243.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.186 kcal (2) G-P(sol) polarization free energy of solvation -71.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds