Wall clock time and date at job start Wed Apr 1 2020 00:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47161 * 2 1 4 4 C 1.50704 * 109.47206 * 119.99534 * 2 1 3 5 5 C 1.38239 * 119.99690 * 84.56825 * 4 2 1 6 6 C 1.38239 * 119.99661 * 179.81240 * 5 4 2 7 7 C 1.38231 * 119.99745 * 0.39232 * 6 5 4 8 8 C 1.38228 * 120.00602 * 359.85417 * 7 6 5 9 9 C 1.38235 * 120.00152 * 264.83721 * 4 2 1 10 10 N 1.46496 * 109.47303 * 239.99568 * 2 1 3 11 11 C 1.46501 * 120.00346 * 172.04370 * 10 2 1 12 12 C 1.50700 * 109.47326 * 275.08437 * 11 10 2 13 13 N 1.34776 * 120.00111 * 184.81965 * 12 11 10 14 14 O 1.21281 * 119.99782 * 4.82630 * 12 11 10 15 15 S 1.65600 * 119.99974 * 352.05089 * 10 2 1 16 16 O 1.42096 * 104.27880 * 170.69078 * 15 10 2 17 17 O 1.42098 * 104.27732 * 42.82922 * 15 10 2 18 18 C 1.81410 * 104.44470 * 286.76023 * 15 10 2 19 19 C 1.53007 * 109.46611 * 172.34428 * 18 15 10 20 20 C 1.50702 * 109.46525 * 180.02562 * 19 18 15 21 21 H 1.07999 * 120.00486 * 359.97438 * 20 19 18 22 22 C 1.37875 * 119.99695 * 179.97438 * 20 19 18 23 23 N 1.31516 * 120.00249 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 120.00344 * 0.02562 * 22 20 19 25 25 H 1.48504 * 109.47472 * 89.99517 * 24 22 20 26 26 H 1.48497 * 109.47609 * 209.99950 * 24 22 20 27 27 H 1.48507 * 109.47047 * 330.00003 * 24 22 20 28 28 H 1.08996 * 109.47059 * 169.54758 * 1 2 3 29 29 H 1.09000 * 109.47102 * 289.54202 * 1 2 3 30 30 H 1.09001 * 109.47101 * 49.54493 * 1 2 3 31 31 H 1.08000 * 120.00218 * 359.97438 * 5 4 2 32 32 H 1.08003 * 119.99752 * 180.22969 * 6 5 4 33 33 H 1.08008 * 119.99716 * 179.83611 * 7 6 5 34 34 H 1.08000 * 120.00700 * 179.97438 * 8 7 6 35 35 H 1.08003 * 119.99972 * 359.97438 * 9 4 2 36 36 H 1.09007 * 109.46982 * 35.08382 * 11 10 2 37 37 H 1.08997 * 109.47147 * 155.08222 * 11 10 2 38 38 H 0.96996 * 120.00005 * 359.97438 * 13 12 11 39 39 H 0.97001 * 119.99996 * 180.02562 * 13 12 11 40 40 H 1.08994 * 109.47187 * 292.33956 * 18 15 10 41 41 H 1.08994 * 109.46987 * 52.34228 * 18 15 10 42 42 H 1.08994 * 109.46960 * 299.99668 * 19 18 15 43 43 H 1.08998 * 109.46916 * 60.00316 * 19 18 15 44 44 H 0.97002 * 120.00688 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 2.1559 -2.0872 1.2318 6 6 2.6204 -2.7384 2.3592 7 6 2.9536 -2.0135 3.4880 8 6 2.8252 -0.6372 3.4886 9 6 2.3643 0.0144 2.3599 10 7 2.0183 -0.6907 -1.1961 11 6 3.4472 -0.6745 -1.5193 12 6 3.7749 0.5815 -2.2849 13 7 5.0166 0.7674 -2.7748 14 8 2.9213 1.4250 -2.4601 15 16 0.9552 -1.4896 -2.1829 16 8 1.7280 -1.8340 -3.3246 17 8 -0.1549 -0.6088 -2.2882 18 6 0.5013 -2.9771 -1.2491 19 6 -0.6282 -3.7103 -1.9755 20 6 -1.0057 -4.9457 -1.1994 21 1 -0.4913 -5.1843 -0.2803 22 6 -2.0079 -5.7714 -1.6628 23 7 -2.3378 -6.8493 -0.9853 24 14 -2.8974 -5.3593 -3.2529 25 1 -2.1890 -5.9916 -4.3946 26 1 -4.2895 -5.8722 -3.1888 27 1 -2.9207 -3.8862 -3.4395 28 1 -0.3633 -1.0106 -0.1864 29 1 -0.3633 0.3438 0.9685 30 1 -0.3633 0.6668 -0.7820 31 1 1.8920 -2.6538 0.3510 32 1 2.7204 -3.8138 2.3589 33 1 3.3140 -2.5226 4.3698 34 1 3.0852 -0.0708 4.3706 35 1 2.2641 1.0898 2.3602 36 1 4.0285 -0.7003 -0.5975 37 1 3.6919 -1.5452 -2.1276 38 1 5.6994 0.0930 -2.6342 39 1 5.2276 1.5760 -3.2672 40 1 1.3675 -3.6337 -1.1681 41 1 0.1670 -2.6920 -0.2517 42 1 -1.4944 -3.0538 -2.0565 43 1 -0.2937 -3.9955 -2.9730 44 1 -3.0427 -7.4305 -1.3114 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342563035.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:43 Heat of formation + Delta-G solvation = -66.518589 kcal Electronic energy + Delta-G solvation = -28973.239798 eV Core-core repulsion = 25018.479759 eV Total energy + Delta-G solvation = -3954.760039 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.00157 -39.23504 -37.11906 -36.35341 -35.52576 -34.07084 -33.79622 -32.18784 -31.60503 -30.81022 -29.51753 -26.74197 -26.13760 -23.96829 -22.59883 -21.35752 -21.15822 -20.76869 -18.61906 -17.82325 -17.57983 -17.27270 -16.75540 -16.43544 -16.23128 -15.66230 -15.26158 -15.05994 -14.91831 -14.40835 -14.17967 -13.95051 -13.77279 -13.72608 -13.41725 -13.24753 -12.77323 -12.66734 -12.40182 -12.05151 -11.97850 -11.92193 -11.66114 -11.48431 -11.36634 -11.28023 -11.00548 -10.84041 -10.56244 -10.41100 -10.28335 -10.14532 -9.83257 -9.72718 -9.42682 -8.99464 -8.94696 -8.74763 -8.67352 -6.17832 -4.19206 0.53590 1.28511 1.36789 2.53129 2.77214 3.25706 3.33543 3.38485 3.41518 3.74390 4.13681 4.34999 4.41633 4.48841 4.65183 4.81690 4.89482 4.96793 5.06005 5.09678 5.12772 5.15407 5.23567 5.38332 5.42142 5.46313 5.53744 5.63926 5.85958 5.93492 5.96673 6.05712 6.22831 6.34418 6.42902 6.51310 6.55305 6.61756 6.68348 6.78111 6.91150 6.95940 7.16490 7.52437 8.14180 8.34694 8.83012 9.41923 10.94379 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010606 B = 0.004815 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2639.382488 B = 5813.191453 C = 7534.078097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.196 3.804 3 H 0.095 0.905 4 C -0.099 4.099 5 C -0.119 4.119 6 C -0.112 4.112 7 C -0.123 4.123 8 C -0.121 4.121 9 C -0.112 4.112 10 N -0.979 5.979 11 C 0.103 3.897 12 C 0.499 3.501 13 N -0.857 5.857 14 O -0.529 6.529 15 S 2.586 3.414 16 O -0.966 6.966 17 O -0.947 6.947 18 C -0.597 4.597 19 C -0.004 4.004 20 C -0.518 4.518 21 H 0.079 0.921 22 C 0.074 3.926 23 N -0.895 5.895 24 Si 0.866 3.134 25 H -0.271 1.271 26 H -0.281 1.281 27 H -0.261 1.261 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.106 0.894 31 H 0.130 0.870 32 H 0.125 0.875 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.111 0.889 37 H 0.119 0.881 38 H 0.401 0.599 39 H 0.400 0.600 40 H 0.128 0.872 41 H 0.134 0.866 42 H 0.036 0.964 43 H 0.025 0.975 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.678 13.433 6.037 22.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.090 3.910 3 H 0.113 0.887 4 C -0.101 4.101 5 C -0.137 4.137 6 C -0.130 4.130 7 C -0.141 4.141 8 C -0.139 4.139 9 C -0.131 4.131 10 N -0.813 5.813 11 C -0.027 4.027 12 C 0.282 3.718 13 N -0.422 5.422 14 O -0.404 6.404 15 S 2.685 3.315 16 O -0.957 6.957 17 O -0.937 6.937 18 C -0.729 4.729 19 C -0.043 4.043 20 C -0.557 4.557 21 H 0.097 0.903 22 C -0.129 4.129 23 N -0.533 5.533 24 Si 0.692 3.308 25 H -0.197 1.197 26 H -0.207 1.207 27 H -0.185 1.185 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.125 0.875 31 H 0.148 0.852 32 H 0.143 0.857 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.139 0.861 36 H 0.129 0.871 37 H 0.137 0.863 38 H 0.229 0.771 39 H 0.231 0.769 40 H 0.146 0.854 41 H 0.152 0.848 42 H 0.054 0.946 43 H 0.044 0.956 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 15.588 14.047 5.153 21.607 hybrid contribution 0.138 -0.422 -0.247 0.508 sum 15.725 13.625 4.906 21.378 Atomic orbital electron populations 1.22747 0.91738 1.04893 1.04774 1.19785 0.94966 0.95874 0.80364 0.88735 1.20342 0.99728 0.94277 0.95712 1.21459 0.98841 0.94020 0.99352 1.21229 0.98466 1.00239 0.93094 1.21169 1.00415 0.94249 0.98250 1.21087 1.00137 0.94666 0.98010 1.20946 0.99577 0.99722 0.92854 1.57483 1.16807 1.67492 1.39482 1.21048 0.83482 0.96964 1.01192 1.21358 0.82201 0.89156 0.79093 1.43845 1.12865 1.25685 1.59834 1.90765 1.46915 1.44990 1.57707 1.05953 0.73952 0.76920 0.74722 1.93509 1.69980 1.85350 1.46836 1.93607 1.52747 1.61722 1.85671 1.30722 1.10470 1.17442 1.14238 1.19404 0.91613 0.97477 0.95834 1.20814 1.19808 1.05299 1.09783 0.90317 1.24956 0.96351 0.94615 0.97005 1.69874 1.30672 1.13660 1.39046 0.86979 0.79666 0.79927 0.84253 1.19686 1.20704 1.18499 0.91878 0.90613 0.87518 0.85232 0.85728 0.86285 0.86276 0.86083 0.87148 0.86279 0.77070 0.76915 0.85360 0.84836 0.94598 0.95648 0.92370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.62 7.61 37.16 0.28 -2.34 16 2 C 0.20 2.51 3.12 -69.08 -0.22 2.30 16 3 H 0.09 1.16 7.95 -51.93 -0.41 0.74 16 4 C -0.10 -1.15 4.30 -104.62 -0.45 -1.59 16 5 C -0.12 -1.46 8.71 -39.58 -0.34 -1.80 16 6 C -0.11 -1.28 10.05 -39.58 -0.40 -1.67 16 7 C -0.12 -1.23 10.05 -39.59 -0.40 -1.62 16 8 C -0.12 -1.14 10.05 -39.59 -0.40 -1.54 16 9 C -0.11 -1.14 9.68 -39.58 -0.38 -1.52 16 10 N -0.98 -13.63 1.49 -109.80 -0.16 -13.80 16 11 C 0.10 1.13 5.69 -5.19 -0.03 1.10 16 12 C 0.50 6.14 8.16 -10.99 -0.09 6.05 16 13 N -0.86 -6.51 8.87 31.22 0.28 -6.23 16 14 O -0.53 -8.95 17.09 5.56 0.09 -8.85 16 15 S 2.59 46.34 4.80 -107.50 -0.52 45.83 16 16 O -0.97 -19.05 16.46 -57.54 -0.95 -20.00 16 17 O -0.95 -19.35 13.88 -57.54 -0.80 -20.15 16 18 C -0.60 -10.88 3.81 37.16 0.14 -10.74 16 19 C 0.00 -0.09 4.05 -27.88 -0.11 -0.21 16 20 C -0.52 -14.15 9.66 -34.44 -0.33 -14.48 16 21 H 0.08 2.24 7.99 -52.49 -0.42 1.83 16 22 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 23 N -0.89 -26.69 13.96 55.43 0.77 -25.91 16 24 Si 0.87 21.34 27.47 -169.99 -4.67 16.67 16 25 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 27 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 28 H 0.06 0.98 4.23 -51.93 -0.22 0.76 16 29 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 30 H 0.11 1.70 6.53 -51.93 -0.34 1.36 16 31 H 0.13 1.65 3.56 -52.49 -0.19 1.46 16 32 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 33 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 34 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 35 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 36 H 0.11 0.86 7.62 -51.93 -0.40 0.46 16 37 H 0.12 1.17 7.12 -51.93 -0.37 0.80 16 38 H 0.40 1.65 8.83 -40.82 -0.36 1.29 16 39 H 0.40 2.68 8.93 -40.82 -0.36 2.32 16 40 H 0.13 2.06 7.41 -51.93 -0.39 1.67 16 41 H 0.13 2.26 5.13 -51.93 -0.27 2.00 16 42 H 0.04 0.85 7.20 -51.93 -0.37 0.47 16 43 H 0.03 0.59 7.57 -51.93 -0.39 0.19 16 44 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 363.88 15.07 5.48 5.48 Total: -1.00 -37.02 363.88 -9.05 -46.08 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -5.76 Total: 6.96 kcal Atomic # 6 Polarization: -23.25 SS G_CDS: -2.82 Total: -26.07 kcal Atomic # 7 Polarization: -46.82 SS G_CDS: 0.89 Total: -45.94 kcal Atomic # 8 Polarization: -47.35 SS G_CDS: -1.65 Total: -49.00 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.67 Total: 16.67 kcal Atomic # 16 Polarization: 46.34 SS G_CDS: -0.52 Total: 45.83 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -37.02 -9.05 -46.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342563035.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.441 kcal (2) G-P(sol) polarization free energy of solvation -37.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds