Wall clock time and date at job start Wed Apr 1 2020 00:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47161 * 2 1 4 4 C 1.50704 * 109.47206 * 119.99534 * 2 1 3 5 5 C 1.38239 * 119.99690 * 84.56825 * 4 2 1 6 6 C 1.38239 * 119.99661 * 179.81240 * 5 4 2 7 7 C 1.38231 * 119.99745 * 0.39232 * 6 5 4 8 8 C 1.38228 * 120.00602 * 359.85417 * 7 6 5 9 9 C 1.38235 * 120.00152 * 264.83721 * 4 2 1 10 10 N 1.46496 * 109.47303 * 239.99568 * 2 1 3 11 11 C 1.46501 * 120.00346 * 172.04370 * 10 2 1 12 12 C 1.50700 * 109.47326 * 275.08437 * 11 10 2 13 13 N 1.34776 * 120.00111 * 184.81965 * 12 11 10 14 14 O 1.21281 * 119.99782 * 4.82630 * 12 11 10 15 15 S 1.65600 * 119.99974 * 352.05089 * 10 2 1 16 16 O 1.42096 * 104.27880 * 170.69078 * 15 10 2 17 17 O 1.42098 * 104.27732 * 42.82922 * 15 10 2 18 18 C 1.81410 * 104.44470 * 286.76023 * 15 10 2 19 19 C 1.53007 * 109.46611 * 172.34428 * 18 15 10 20 20 C 1.50702 * 109.46525 * 180.02562 * 19 18 15 21 21 H 1.07999 * 120.00486 * 359.97438 * 20 19 18 22 22 C 1.37875 * 119.99695 * 179.97438 * 20 19 18 23 23 N 1.31516 * 120.00249 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 120.00344 * 0.02562 * 22 20 19 25 25 H 1.48504 * 109.47472 * 89.99517 * 24 22 20 26 26 H 1.48497 * 109.47609 * 209.99950 * 24 22 20 27 27 H 1.48507 * 109.47047 * 330.00003 * 24 22 20 28 28 H 1.08996 * 109.47059 * 169.54758 * 1 2 3 29 29 H 1.09000 * 109.47102 * 289.54202 * 1 2 3 30 30 H 1.09001 * 109.47101 * 49.54493 * 1 2 3 31 31 H 1.08000 * 120.00218 * 359.97438 * 5 4 2 32 32 H 1.08003 * 119.99752 * 180.22969 * 6 5 4 33 33 H 1.08008 * 119.99716 * 179.83611 * 7 6 5 34 34 H 1.08000 * 120.00700 * 179.97438 * 8 7 6 35 35 H 1.08003 * 119.99972 * 359.97438 * 9 4 2 36 36 H 1.09007 * 109.46982 * 35.08382 * 11 10 2 37 37 H 1.08997 * 109.47147 * 155.08222 * 11 10 2 38 38 H 0.96996 * 120.00005 * 359.97438 * 13 12 11 39 39 H 0.97001 * 119.99996 * 180.02562 * 13 12 11 40 40 H 1.08994 * 109.47187 * 292.33956 * 18 15 10 41 41 H 1.08994 * 109.46987 * 52.34228 * 18 15 10 42 42 H 1.08994 * 109.46960 * 299.99668 * 19 18 15 43 43 H 1.08998 * 109.46916 * 60.00316 * 19 18 15 44 44 H 0.97002 * 120.00688 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 2.1559 -2.0872 1.2318 6 6 2.6204 -2.7384 2.3592 7 6 2.9536 -2.0135 3.4880 8 6 2.8252 -0.6372 3.4886 9 6 2.3643 0.0144 2.3599 10 7 2.0183 -0.6907 -1.1961 11 6 3.4472 -0.6745 -1.5193 12 6 3.7749 0.5815 -2.2849 13 7 5.0166 0.7674 -2.7748 14 8 2.9213 1.4250 -2.4601 15 16 0.9552 -1.4896 -2.1829 16 8 1.7280 -1.8340 -3.3246 17 8 -0.1549 -0.6088 -2.2882 18 6 0.5013 -2.9771 -1.2491 19 6 -0.6282 -3.7103 -1.9755 20 6 -1.0057 -4.9457 -1.1994 21 1 -0.4913 -5.1843 -0.2803 22 6 -2.0079 -5.7714 -1.6628 23 7 -2.3378 -6.8493 -0.9853 24 14 -2.8974 -5.3593 -3.2529 25 1 -2.1890 -5.9916 -4.3946 26 1 -4.2895 -5.8722 -3.1888 27 1 -2.9207 -3.8862 -3.4395 28 1 -0.3633 -1.0106 -0.1864 29 1 -0.3633 0.3438 0.9685 30 1 -0.3633 0.6668 -0.7820 31 1 1.8920 -2.6538 0.3510 32 1 2.7204 -3.8138 2.3589 33 1 3.3140 -2.5226 4.3698 34 1 3.0852 -0.0708 4.3706 35 1 2.2641 1.0898 2.3602 36 1 4.0285 -0.7003 -0.5975 37 1 3.6919 -1.5452 -2.1276 38 1 5.6994 0.0930 -2.6342 39 1 5.2276 1.5760 -3.2672 40 1 1.3675 -3.6337 -1.1681 41 1 0.1670 -2.6920 -0.2517 42 1 -1.4944 -3.0538 -2.0565 43 1 -0.2937 -3.9955 -2.9730 44 1 -3.0427 -7.4305 -1.3114 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342563035.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:42 Heat of formation + Delta-G solvation = -94.736536 kcal Electronic energy + Delta-G solvation = -28974.463420 eV Core-core repulsion = 25018.479759 eV Total energy + Delta-G solvation = -3955.983661 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.92739 -40.13686 -38.50652 -37.46519 -36.98075 -35.97365 -34.65789 -33.64595 -33.03185 -31.67869 -30.43468 -28.08780 -27.64754 -25.04718 -23.51944 -22.95851 -22.06692 -21.82667 -19.95865 -19.31484 -18.68578 -18.39747 -18.04272 -17.45383 -17.26150 -16.96272 -16.46740 -16.27648 -16.14966 -15.85180 -15.41170 -15.11578 -14.90489 -14.85062 -14.77724 -14.26881 -14.19421 -13.81291 -13.71981 -13.45528 -13.33910 -13.14366 -13.07052 -12.97496 -12.85853 -12.47554 -12.29188 -12.09759 -11.98352 -11.82712 -11.71230 -11.64545 -11.33428 -11.21008 -10.83747 -10.62872 -10.10008 -9.74855 -9.58934 -8.35896 -6.40880 -0.87241 0.46196 0.56840 1.30378 1.33605 1.43106 1.52823 1.63688 2.29235 2.56910 2.79427 2.92317 2.98060 3.12329 3.36904 3.72900 3.82219 3.92117 4.03196 4.11505 4.15768 4.20813 4.27352 4.35923 4.37486 4.52080 4.61359 4.67416 4.72418 4.80551 4.99300 5.02365 5.05234 5.12367 5.22178 5.38452 5.40530 5.46496 5.65062 5.71479 5.79130 5.93139 6.16985 6.17804 6.48253 6.64669 7.23284 7.36646 8.79370 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010606 B = 0.004815 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2639.382488 B = 5813.191453 C = 7534.078097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.201 3.799 3 H 0.104 0.896 4 C -0.103 4.103 5 C -0.136 4.136 6 C -0.128 4.128 7 C -0.123 4.123 8 C -0.118 4.118 9 C -0.111 4.111 10 N -0.972 5.972 11 C 0.094 3.906 12 C 0.493 3.507 13 N -0.834 5.834 14 O -0.583 6.583 15 S 2.603 3.397 16 O -0.986 6.986 17 O -0.977 6.977 18 C -0.595 4.595 19 C -0.012 4.012 20 C -0.521 4.521 21 H 0.054 0.946 22 C 0.019 3.981 23 N -0.937 5.937 24 Si 0.917 3.083 25 H -0.260 1.260 26 H -0.274 1.274 27 H -0.253 1.253 28 H 0.046 0.954 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.118 0.882 32 H 0.125 0.875 33 H 0.139 0.861 34 H 0.146 0.854 35 H 0.141 0.859 36 H 0.148 0.852 37 H 0.132 0.868 38 H 0.420 0.580 39 H 0.408 0.592 40 H 0.147 0.853 41 H 0.143 0.857 42 H 0.031 0.969 43 H 0.028 0.972 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.617 14.723 6.792 24.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.096 3.904 3 H 0.122 0.878 4 C -0.105 4.105 5 C -0.154 4.154 6 C -0.146 4.146 7 C -0.141 4.141 8 C -0.136 4.136 9 C -0.130 4.130 10 N -0.808 5.808 11 C -0.034 4.034 12 C 0.276 3.724 13 N -0.399 5.399 14 O -0.463 6.463 15 S 2.701 3.299 16 O -0.976 6.976 17 O -0.967 6.967 18 C -0.726 4.726 19 C -0.051 4.051 20 C -0.560 4.560 21 H 0.072 0.928 22 C -0.180 4.180 23 N -0.577 5.577 24 Si 0.740 3.260 25 H -0.184 1.184 26 H -0.199 1.199 27 H -0.177 1.177 28 H 0.065 0.935 29 H 0.115 0.885 30 H 0.104 0.896 31 H 0.136 0.864 32 H 0.143 0.857 33 H 0.157 0.843 34 H 0.164 0.836 35 H 0.158 0.842 36 H 0.165 0.835 37 H 0.150 0.850 38 H 0.252 0.748 39 H 0.239 0.761 40 H 0.165 0.835 41 H 0.161 0.839 42 H 0.049 0.951 43 H 0.047 0.953 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 17.586 15.312 5.894 24.051 hybrid contribution -0.325 -0.795 -0.360 0.931 sum 17.261 14.517 5.535 23.223 Atomic orbital electron populations 1.22737 0.93220 1.03375 1.05243 1.19807 0.93859 0.96385 0.80395 0.87810 1.20172 1.00710 0.93925 0.95656 1.21439 1.00007 0.94437 0.99483 1.21364 0.99094 1.00581 0.93544 1.21456 0.99575 0.94752 0.98320 1.21419 0.98968 0.94592 0.98626 1.21196 0.98705 1.00743 0.92333 1.57111 1.17704 1.66634 1.39382 1.21434 0.81936 0.96935 1.03134 1.21591 0.82842 0.88903 0.79020 1.43653 1.11867 1.26312 1.58087 1.90749 1.48740 1.46738 1.60028 1.05161 0.73729 0.76438 0.74527 1.93471 1.70323 1.85685 1.48170 1.93583 1.54566 1.62251 1.86300 1.30675 1.09484 1.18088 1.14309 1.19344 0.93413 0.96320 0.96053 1.21094 1.19178 1.06542 1.09175 0.92763 1.25761 0.97403 0.94582 1.00236 1.69990 1.31776 1.14944 1.40966 0.86150 0.78945 0.80205 0.80739 1.18424 1.19878 1.17696 0.93528 0.88452 0.89568 0.86381 0.85682 0.84303 0.83587 0.84152 0.83461 0.85027 0.74796 0.76095 0.83474 0.83890 0.95074 0.95329 0.92133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.32 7.61 71.98 0.55 -4.77 16 2 C 0.20 4.90 3.12 44.25 0.14 5.04 16 3 H 0.10 2.38 7.95 -2.39 -0.02 2.36 16 4 C -0.10 -2.18 4.30 -19.86 -0.09 -2.27 16 5 C -0.14 -3.16 8.71 22.27 0.19 -2.96 16 6 C -0.13 -2.72 10.05 22.27 0.22 -2.49 16 7 C -0.12 -2.12 10.05 22.27 0.22 -1.90 16 8 C -0.12 -1.82 10.05 22.27 0.22 -1.60 16 9 C -0.11 -1.90 9.68 22.27 0.22 -1.69 16 10 N -0.97 -26.09 1.49 -501.31 -0.74 -26.84 16 11 C 0.09 1.87 5.69 85.63 0.49 2.36 16 12 C 0.49 11.30 8.16 87.66 0.72 12.02 16 13 N -0.83 -10.64 8.87 -173.53 -1.54 -12.18 16 14 O -0.58 -19.40 17.09 -3.03 -0.05 -19.45 16 15 S 2.60 92.96 4.80 -56.49 -0.27 92.69 16 16 O -0.99 -38.41 16.46 -127.65 -2.10 -40.51 16 17 O -0.98 -40.57 13.88 -127.65 -1.77 -42.34 16 18 C -0.59 -21.75 3.81 71.98 0.27 -21.47 16 19 C -0.01 -0.57 4.05 29.85 0.12 -0.45 16 20 C -0.52 -29.00 9.66 25.60 0.25 -28.75 16 21 H 0.05 3.20 7.99 -2.91 -0.02 3.17 16 22 C 0.02 1.10 5.47 84.65 0.46 1.56 16 23 N -0.94 -57.00 13.96 21.45 0.30 -56.70 16 24 Si 0.92 43.88 27.47 68.60 1.88 45.76 16 25 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 26 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 27 H -0.25 -11.71 6.54 99.48 0.65 -11.06 16 28 H 0.05 1.46 4.23 -2.39 -0.01 1.45 16 29 H 0.10 2.24 8.10 -2.39 -0.02 2.22 16 30 H 0.09 2.80 6.53 -2.39 -0.02 2.79 16 31 H 0.12 2.94 3.56 -2.91 -0.01 2.93 16 32 H 0.13 2.54 8.06 -2.91 -0.02 2.51 16 33 H 0.14 1.79 8.06 -2.91 -0.02 1.76 16 34 H 0.15 1.46 8.06 -2.91 -0.02 1.44 16 35 H 0.14 1.84 8.06 -2.91 -0.02 1.81 16 36 H 0.15 1.82 7.62 -2.38 -0.02 1.80 16 37 H 0.13 2.29 7.12 -2.39 -0.02 2.28 16 38 H 0.42 2.14 8.83 -92.71 -0.82 1.32 16 39 H 0.41 4.57 8.93 -92.71 -0.83 3.74 16 40 H 0.15 4.70 7.41 -2.39 -0.02 4.69 16 41 H 0.14 4.93 5.13 -2.39 -0.01 4.91 16 42 H 0.03 1.48 7.20 -2.39 -0.02 1.47 16 43 H 0.03 1.32 7.57 -2.39 -0.02 1.30 16 44 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -81.67 363.88 -0.95 -82.63 By element: Atomic # 1 Polarization: 24.96 SS G_CDS: -0.64 Total: 24.31 kcal Atomic # 6 Polarization: -51.37 SS G_CDS: 3.99 Total: -47.38 kcal Atomic # 7 Polarization: -93.73 SS G_CDS: -1.99 Total: -95.71 kcal Atomic # 8 Polarization: -98.37 SS G_CDS: -3.93 Total: -102.30 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 1.88 Total: 45.76 kcal Atomic # 16 Polarization: 92.96 SS G_CDS: -0.27 Total: 92.69 kcal Total: -81.67 -0.95 -82.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342563035.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.111 kcal (2) G-P(sol) polarization free energy of solvation -81.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds