Wall clock time and date at job start Wed Apr 1 2020 00:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47089 * 2 1 4 4 S 1.81397 * 109.47173 * 179.97438 * 3 2 1 5 5 O 1.42107 * 110.53971 * 68.37468 * 4 3 2 6 6 O 1.42100 * 110.54568 * 291.62668 * 4 3 2 7 7 N 1.65599 * 104.44984 * 179.97438 * 4 3 2 8 8 C 1.38872 * 119.99854 * 59.49802 * 7 4 3 9 9 C 1.38956 * 120.17992 * 35.69153 * 8 7 4 10 10 C 1.37951 * 120.06726 * 179.97438 * 9 8 7 11 11 C 1.38611 * 120.42073 * 0.02562 * 10 9 8 12 12 C 1.37745 * 120.35416 * 359.97438 * 11 10 9 13 13 C 1.39735 * 119.92451 * 0.02562 * 12 11 10 14 14 C 1.47439 * 120.20483 * 179.97438 * 13 12 11 15 15 O 1.21597 * 119.99601 * 180.02562 * 14 13 12 16 16 N 1.34773 * 119.99989 * 0.02562 * 14 13 12 17 17 C 1.46496 * 119.99965 * 179.97438 * 16 14 13 18 18 C 1.53005 * 109.47324 * 180.02562 * 17 16 14 19 19 C 1.50697 * 109.47234 * 180.02562 * 18 17 16 20 20 H 1.08000 * 120.00121 * 359.97438 * 19 18 17 21 21 C 1.37875 * 120.00234 * 180.02562 * 19 18 17 22 22 N 1.31512 * 120.00174 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99823 * 359.97438 * 21 19 18 24 24 H 1.48506 * 109.46837 * 90.00274 * 23 21 19 25 25 H 1.48496 * 109.47563 * 210.00397 * 23 21 19 26 26 H 1.48501 * 109.47164 * 330.00602 * 23 21 19 27 27 H 1.09001 * 109.46669 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47359 * 299.99960 * 1 2 3 29 29 H 1.09003 * 109.46744 * 60.00079 * 1 2 3 30 30 H 1.08993 * 109.47449 * 240.00076 * 2 1 3 31 31 H 1.09003 * 109.46744 * 119.99921 * 2 1 3 32 32 H 1.09003 * 109.46987 * 59.99813 * 3 2 1 33 33 H 1.08994 * 109.47028 * 299.99569 * 3 2 1 34 34 H 0.96997 * 120.00329 * 239.49316 * 7 4 3 35 35 H 1.08003 * 119.96489 * 0.25510 * 9 8 7 36 36 H 1.08003 * 119.79090 * 179.97438 * 10 9 8 37 37 H 1.08005 * 119.81936 * 179.97438 * 11 10 9 38 38 H 1.08003 * 120.03839 * 180.02562 * 12 11 10 39 39 H 0.97004 * 120.00231 * 359.97438 * 16 14 13 40 40 H 1.09002 * 109.47610 * 300.00310 * 17 16 14 41 41 H 1.09001 * 109.46973 * 60.00057 * 17 16 14 42 42 H 1.08997 * 109.46726 * 300.00195 * 18 17 16 43 43 H 1.09001 * 109.47121 * 60.00059 * 18 17 16 44 44 H 0.97000 * 119.99814 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 3.8540 1.4426 0.0008 5 8 4.3531 0.9520 -1.2360 6 8 4.3522 0.9523 1.2380 7 7 4.2672 3.0462 0.0000 8 6 3.8488 3.8715 1.0356 9 6 3.7723 3.3800 2.3330 10 6 3.3569 4.2020 3.3601 11 6 3.0129 5.5209 3.1081 12 6 3.0824 6.0261 1.8285 13 6 3.5012 5.2064 0.7772 14 6 3.5773 5.7406 -0.5949 15 8 3.9418 5.0237 -1.5070 16 7 3.2430 7.0233 -0.8382 17 6 3.3192 7.5542 -2.2014 18 6 2.8897 9.0228 -2.2016 19 6 2.9675 9.5687 -3.6040 20 1 3.2913 8.9321 -4.4142 21 6 2.6264 10.8812 -3.8528 22 7 2.6947 11.3578 -5.0767 23 14 2.0670 11.9825 -2.4515 24 1 3.2453 12.6618 -1.8553 25 1 1.1187 13.0007 -2.9703 26 1 1.3925 11.1606 -1.4149 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 4.8014 3.4090 -0.7237 35 1 4.0425 2.3547 2.5384 36 1 3.2986 3.8153 4.3668 37 1 2.6886 6.1558 3.9194 38 1 2.8135 7.0546 1.6380 39 1 2.9518 7.5950 -0.1106 40 1 4.3436 7.4756 -2.5653 41 1 2.6577 6.9818 -2.8517 42 1 1.8654 9.1017 -1.8376 43 1 3.5515 9.5949 -1.5514 44 1 2.4544 12.2811 -5.2517 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345148816.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:00:06 Heat of formation + Delta-G solvation = -115.851976 kcal Electronic energy + Delta-G solvation = -27309.014275 eV Core-core repulsion = 23352.114980 eV Total energy + Delta-G solvation = -3956.899295 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.51741 -39.56671 -38.33082 -37.26447 -36.92093 -35.97084 -35.87375 -34.78659 -32.87355 -31.40179 -30.15429 -28.70525 -27.02824 -24.74167 -23.67130 -22.91766 -22.57658 -21.74598 -20.54314 -19.15316 -19.01541 -18.70130 -18.34191 -17.63503 -16.99367 -16.92133 -16.54673 -16.29443 -16.03552 -15.91980 -15.53805 -15.20164 -15.01930 -14.75623 -14.54715 -14.39720 -14.09804 -13.71405 -13.65322 -13.48302 -13.36630 -13.35924 -13.19882 -13.04080 -12.92095 -12.39848 -12.31077 -12.17591 -12.16487 -11.89933 -11.88126 -11.75557 -11.54934 -11.50672 -10.86111 -10.79132 -10.25037 -9.94686 -9.32683 -8.30122 -6.37927 -0.99761 -0.16208 0.32120 1.39591 1.42523 1.42997 1.53602 1.83432 2.17433 2.37176 2.52830 2.78402 3.03774 3.05164 3.45389 3.66321 3.71646 3.82928 3.88745 4.13389 4.14708 4.33602 4.34965 4.39929 4.41446 4.50604 4.59194 4.67599 4.73580 4.84882 4.98898 5.01947 5.04454 5.10293 5.25298 5.30254 5.35195 5.38722 5.39999 5.52596 5.61905 5.76933 5.99547 6.21419 6.54068 6.70589 7.18471 7.26933 8.86788 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014637 B = 0.002708 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.468016 B =10337.687917 C =11088.064526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.126 4.126 3 C -0.604 4.604 4 S 2.605 3.395 5 O -0.989 6.989 6 O -0.967 6.967 7 N -1.050 6.050 8 C 0.199 3.801 9 C -0.200 4.200 10 C -0.050 4.050 11 C -0.136 4.136 12 C -0.059 4.059 13 C -0.181 4.181 14 C 0.550 3.450 15 O -0.581 6.581 16 N -0.708 5.708 17 C 0.144 3.856 18 C -0.013 4.013 19 C -0.540 4.540 20 H 0.027 0.973 21 C 0.002 3.998 22 N -0.952 5.952 23 Si 0.960 3.040 24 H -0.265 1.265 25 H -0.288 1.288 26 H -0.232 1.232 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.158 0.842 33 H 0.142 0.858 34 H 0.431 0.569 35 H 0.164 0.836 36 H 0.168 0.832 37 H 0.167 0.833 38 H 0.151 0.849 39 H 0.413 0.587 40 H 0.045 0.955 41 H 0.047 0.953 42 H 0.040 0.960 43 H 0.037 0.963 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.415 -18.595 24.757 31.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.165 4.165 3 C -0.738 4.738 4 S 2.704 3.296 5 O -0.980 6.980 6 O -0.957 6.957 7 N -0.801 5.801 8 C 0.099 3.901 9 C -0.221 4.221 10 C -0.068 4.068 11 C -0.154 4.154 12 C -0.078 4.078 13 C -0.188 4.188 14 C 0.340 3.660 15 O -0.464 6.464 16 N -0.359 5.359 17 C 0.021 3.979 18 C -0.050 4.050 19 C -0.579 4.579 20 H 0.045 0.955 21 C -0.195 4.195 22 N -0.592 5.592 23 Si 0.782 3.218 24 H -0.190 1.190 25 H -0.214 1.214 26 H -0.155 1.155 27 H 0.094 0.906 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.096 0.904 31 H 0.111 0.889 32 H 0.176 0.824 33 H 0.160 0.840 34 H 0.274 0.726 35 H 0.181 0.819 36 H 0.186 0.814 37 H 0.185 0.815 38 H 0.169 0.831 39 H 0.251 0.749 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.058 0.942 43 H 0.055 0.945 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.579 -19.763 24.014 31.436 hybrid contribution -0.223 1.564 -0.919 1.827 sum -4.802 -18.199 23.096 29.794 Atomic orbital electron populations 1.21749 0.92448 1.03319 1.02943 1.21458 0.99951 0.90711 1.04378 1.30424 1.21848 1.07725 1.13793 1.05204 0.79374 0.71657 0.73326 1.93575 1.79847 1.78271 1.46305 1.93499 1.78721 1.78545 1.44933 1.53506 1.64623 1.29008 1.32985 1.17642 0.94728 0.89916 0.87776 1.22094 1.05658 1.04376 0.89988 1.21656 0.92314 0.93002 0.99846 1.21530 1.00915 0.96228 0.96754 1.21575 0.94414 0.99737 0.92108 1.19805 1.10537 0.95420 0.93053 1.18631 0.76745 0.81845 0.88805 1.90606 1.49631 1.58714 1.47400 1.45936 1.67151 1.11601 1.11234 1.21071 0.99988 0.94965 0.81914 1.19654 0.97818 0.91719 0.95837 1.21256 1.45652 0.96981 0.93972 0.95456 1.26117 0.94791 0.99751 0.98792 1.70083 1.50072 1.16400 1.22661 0.85526 0.78875 0.78136 0.79252 1.19038 1.21415 1.15504 0.90633 0.91212 0.92435 0.90431 0.88887 0.82440 0.84016 0.72622 0.81867 0.81450 0.81523 0.83130 0.74889 0.93690 0.93493 0.94221 0.94522 0.92343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.91 71.98 0.71 -0.77 16 2 C -0.13 -1.60 5.94 30.60 0.18 -1.42 16 3 C -0.60 -9.04 5.88 71.98 0.42 -8.62 16 4 S 2.61 58.85 5.22 -56.49 -0.29 58.56 16 5 O -0.99 -30.54 18.08 -127.65 -2.31 -32.85 16 6 O -0.97 -23.31 15.08 -127.65 -1.92 -25.23 16 7 N -1.05 -26.53 4.96 -50.95 -0.25 -26.78 16 8 C 0.20 4.43 6.10 38.71 0.24 4.67 16 9 C -0.20 -3.39 9.23 22.37 0.21 -3.18 16 10 C -0.05 -0.53 10.03 22.29 0.22 -0.31 16 11 C -0.14 -1.35 10.02 22.24 0.22 -1.13 16 12 C -0.06 -0.89 9.53 22.52 0.21 -0.67 16 13 C -0.18 -4.12 5.89 -19.98 -0.12 -4.24 16 14 C 0.55 16.89 7.76 86.67 0.67 17.56 16 15 O -0.58 -21.93 13.92 -4.02 -0.06 -21.98 16 16 N -0.71 -21.09 5.51 -466.37 -2.57 -23.65 16 17 C 0.14 5.68 5.61 86.38 0.48 6.17 16 18 C -0.01 -0.54 4.16 29.85 0.12 -0.41 16 19 C -0.54 -30.35 9.66 25.60 0.25 -30.10 16 20 H 0.03 1.73 7.99 -2.91 -0.02 1.71 16 21 C 0.00 0.14 5.47 84.65 0.46 0.60 16 22 N -0.95 -58.98 13.96 21.45 0.30 -58.68 16 23 Si 0.96 41.15 27.47 68.60 1.88 43.03 16 24 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 25 H -0.29 -12.37 7.11 99.48 0.71 -11.66 16 26 H -0.23 -8.63 6.54 99.48 0.65 -7.98 16 27 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.16 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.14 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.43 12.71 6.55 -96.75 -0.63 12.08 16 35 H 0.16 2.86 5.20 -2.91 -0.02 2.84 16 36 H 0.17 0.66 8.06 -2.91 -0.02 0.64 16 37 H 0.17 0.56 8.06 -2.91 -0.02 0.54 16 38 H 0.15 1.63 6.40 -2.91 -0.02 1.62 16 39 H 0.41 9.24 6.50 -92.71 -0.60 8.64 16 40 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.04 1.58 7.20 -2.39 -0.02 1.56 16 43 H 0.04 1.45 7.57 -2.39 -0.02 1.43 16 44 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -81.10 375.25 -1.18 -82.28 By element: Atomic # 1 Polarization: 27.40 SS G_CDS: -0.26 Total: 27.15 kcal Atomic # 6 Polarization: -26.15 SS G_CDS: 4.30 Total: -21.85 kcal Atomic # 7 Polarization: -106.59 SS G_CDS: -2.52 Total: -109.11 kcal Atomic # 8 Polarization: -75.78 SS G_CDS: -4.29 Total: -80.06 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 1.88 Total: 43.03 kcal Atomic # 16 Polarization: 58.85 SS G_CDS: -0.29 Total: 58.56 kcal Total: -81.10 -1.18 -82.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345148816.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.568 kcal (2) G-P(sol) polarization free energy of solvation -81.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds