Wall clock time and date at job start Wed Apr 1 2020 00:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47425 * 2 1 4 4 C 1.50694 * 109.47156 * 239.99819 * 2 1 3 5 5 C 1.38238 * 120.00392 * 115.17120 * 4 2 1 6 6 C 1.38238 * 120.00178 * 179.81157 * 5 4 2 7 7 C 1.38228 * 119.99779 * 0.41791 * 6 5 4 8 8 S 1.76199 * 119.99866 * 179.78950 * 7 6 5 9 9 C 1.81400 * 104.45220 * 270.02579 * 8 7 6 10 10 O 1.42104 * 104.27832 * 26.09439 * 8 7 6 11 11 O 1.42103 * 104.27766 * 153.95298 * 8 7 6 12 12 C 1.38239 * 120.00475 * 359.81593 * 7 6 5 13 13 C 1.38235 * 119.99873 * 295.44788 * 4 2 1 14 14 N 1.46504 * 109.47186 * 119.99801 * 2 1 3 15 15 C 1.46495 * 120.00127 * 53.82548 * 14 2 1 16 16 C 1.34775 * 119.99760 * 233.82726 * 14 2 1 17 17 O 1.21582 * 120.00220 * 0.02562 * 16 14 2 18 18 N 1.34774 * 119.99880 * 180.02562 * 16 14 2 19 19 C 1.46502 * 120.00064 * 179.97438 * 18 16 14 20 20 C 1.50706 * 109.47053 * 179.97438 * 19 18 16 21 21 H 1.08001 * 119.99693 * 0.02562 * 20 19 18 22 22 C 1.37869 * 120.00045 * 179.97438 * 20 19 18 23 23 N 1.31513 * 120.00125 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00211 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46917 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.46942 * 119.99812 * 24 22 20 27 27 H 1.48498 * 109.47393 * 240.00105 * 24 22 20 28 28 H 1.08995 * 109.47405 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47165 * 300.00144 * 1 2 3 30 30 H 1.08999 * 109.47083 * 59.99879 * 1 2 3 31 31 H 1.07998 * 119.99543 * 359.97438 * 5 4 2 32 32 H 1.07998 * 119.99485 * 180.21068 * 6 5 4 33 33 H 1.09002 * 109.47166 * 59.99399 * 9 8 7 34 34 H 1.08996 * 109.47523 * 179.97438 * 9 8 7 35 35 H 1.08996 * 109.46917 * 300.00007 * 9 8 7 36 36 H 1.07995 * 119.99958 * 179.97438 * 12 7 6 37 37 H 1.07992 * 120.00353 * 359.97438 * 13 4 2 38 38 H 1.09003 * 109.46958 * 89.06196 * 15 14 2 39 39 H 1.08995 * 109.47299 * 209.07006 * 15 14 2 40 40 H 1.09003 * 109.46920 * 329.06893 * 15 14 2 41 41 H 0.97001 * 119.99836 * 359.97438 * 18 16 14 42 42 H 1.08994 * 109.47268 * 299.99381 * 19 18 16 43 43 H 1.08997 * 109.47229 * 60.00317 * 19 18 16 44 44 H 0.97005 * 120.00333 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 6 2.7428 -0.0132 -2.1896 6 6 3.2069 -0.6657 -3.3164 7 6 2.9531 -2.0136 -3.4881 8 16 3.5399 -2.8442 -4.9270 9 6 2.1947 -2.6689 -6.1312 10 8 4.6726 -2.0873 -5.3312 11 8 3.6716 -4.1994 -4.5202 12 6 2.2385 -2.7099 -2.5313 13 6 1.7777 -2.0582 -1.4027 14 7 2.0183 -0.6906 1.1962 15 6 1.5565 -2.0476 1.4985 16 6 2.8925 -0.0774 2.0186 17 8 3.2754 1.0490 1.7680 18 7 3.3421 -0.7128 3.1188 19 6 4.2927 -0.0465 4.0125 20 6 4.6333 -0.9645 5.1581 21 1 4.1866 -1.9462 5.2146 22 6 5.5159 -0.5516 6.1335 23 7 6.0601 0.6437 6.0644 24 14 5.9386 -1.6897 7.5532 25 1 5.1991 -2.9683 7.3996 26 1 7.3988 -1.9598 7.5531 27 1 5.5544 -1.0459 8.8350 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 2.9374 1.0409 -2.0573 32 1 3.7649 -0.1216 -4.0640 33 1 2.0103 -1.6111 -6.3186 34 1 2.4752 -3.1592 -7.0634 35 1 1.2902 -3.1307 -5.7353 36 1 2.0399 -3.7629 -2.6658 37 1 1.2192 -2.6021 -0.6553 38 1 2.2145 -2.7710 1.0169 39 1 1.5712 -2.2046 2.5769 40 1 0.5402 -2.1768 1.1263 41 1 3.0363 -1.6114 3.3189 42 1 5.2002 0.1981 3.4604 43 1 3.8459 0.8685 4.4011 44 1 6.6808 0.9344 6.7509 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426417356.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:06:35 Heat of formation + Delta-G solvation = -60.718792 kcal Electronic energy + Delta-G solvation = -27164.171355 eV Core-core repulsion = 23209.662814 eV Total energy + Delta-G solvation = -3954.508541 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.36958 -39.01145 -37.39184 -36.26233 -36.02360 -34.27147 -32.85602 -31.83282 -31.28341 -30.07129 -29.58237 -27.26241 -26.84274 -24.23119 -23.07444 -22.74574 -21.09531 -19.36055 -19.27733 -18.15452 -18.03752 -16.57744 -16.43690 -16.35742 -15.98126 -15.63386 -15.17772 -14.98741 -14.66026 -14.63439 -13.92983 -13.84820 -13.66489 -13.63656 -13.57241 -13.20020 -13.04939 -12.86294 -12.40728 -12.38906 -12.35210 -12.23572 -12.01005 -11.87639 -11.75180 -11.51465 -11.39343 -11.14853 -10.93552 -10.91433 -10.81267 -10.29523 -9.52875 -9.37025 -9.30470 -9.24682 -8.74597 -8.53481 -7.78952 -6.15697 -4.22315 -0.27914 0.56318 1.09226 2.54870 2.95505 3.24133 3.29641 3.32351 3.35376 3.65824 3.77514 3.82289 4.31209 4.33412 4.38586 4.42719 4.60926 4.66035 4.74440 5.00465 5.03392 5.09133 5.13620 5.17685 5.20585 5.23371 5.42973 5.47834 5.52034 5.65932 5.68959 5.81735 5.84087 5.87782 6.01838 6.28655 6.60109 6.66218 7.06600 7.48054 7.50774 7.56022 7.81834 8.00583 8.73525 8.86753 9.27316 9.45944 10.94589 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015865 B = 0.002414 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.451337 B =11597.026329 C =12309.898180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.185 3.815 3 H 0.114 0.886 4 C -0.032 4.032 5 C -0.125 4.125 6 C -0.023 4.023 7 C -0.664 4.664 8 S 2.501 3.499 9 C -0.650 4.650 10 O -0.938 6.938 11 O -0.939 6.939 12 C -0.026 4.026 13 C -0.135 4.135 14 N -0.634 5.634 15 C 0.072 3.928 16 C 0.697 3.303 17 O -0.597 6.597 18 N -0.726 5.726 19 C 0.266 3.734 20 C -0.541 4.541 21 H 0.062 0.938 22 C 0.063 3.937 23 N -0.885 5.885 24 Si 0.904 3.096 25 H -0.272 1.272 26 H -0.282 1.282 27 H -0.282 1.282 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.136 0.864 32 H 0.141 0.859 33 H 0.131 0.869 34 H 0.130 0.870 35 H 0.131 0.869 36 H 0.140 0.860 37 H 0.136 0.864 38 H 0.054 0.946 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.387 0.613 42 H 0.025 0.975 43 H 0.025 0.975 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.066 -7.068 -23.439 28.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.080 3.920 3 H 0.132 0.868 4 C -0.033 4.033 5 C -0.144 4.144 6 C -0.042 4.042 7 C -0.751 4.751 8 S 2.681 3.319 9 C -0.800 4.800 10 O -0.935 6.935 11 O -0.936 6.936 12 C -0.045 4.045 13 C -0.154 4.154 14 N -0.373 5.373 15 C -0.071 4.071 16 C 0.398 3.602 17 O -0.476 6.476 18 N -0.379 5.379 19 C 0.145 3.855 20 C -0.580 4.580 21 H 0.080 0.920 22 C -0.140 4.140 23 N -0.522 5.522 24 Si 0.731 3.269 25 H -0.197 1.197 26 H -0.208 1.208 27 H -0.208 1.208 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.153 0.847 32 H 0.159 0.841 33 H 0.150 0.850 34 H 0.149 0.851 35 H 0.150 0.850 36 H 0.158 0.842 37 H 0.154 0.846 38 H 0.073 0.927 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.221 0.779 42 H 0.043 0.957 43 H 0.043 0.957 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.824 -6.506 -23.539 28.062 hybrid contribution -0.559 -0.620 1.184 1.448 sum -14.382 -7.127 -22.355 27.521 Atomic orbital electron populations 1.22154 0.93908 1.02522 1.02953 1.19829 0.93896 0.97556 0.80726 0.86768 1.20699 0.93406 0.94397 0.94825 1.21267 0.98186 1.00975 0.94008 1.20917 0.93756 0.92085 0.97467 1.30424 1.17131 1.06367 1.21227 1.05101 0.76397 0.74645 0.75768 1.30232 1.20137 1.12198 1.17444 1.93594 1.45224 1.72119 1.82581 1.93588 1.85456 1.33513 1.81030 1.20902 0.91985 0.99376 0.92239 1.21377 1.01539 0.94443 0.98009 1.47047 1.48530 1.16503 1.25170 1.21845 0.99666 0.83809 1.01796 1.16068 0.79160 0.84519 0.80470 1.90854 1.62661 1.18502 1.75594 1.45871 1.48474 1.19182 1.24358 1.19009 0.86697 0.93013 0.86828 1.21238 1.27413 1.01470 1.07832 0.91968 1.24944 0.95525 0.95358 0.98209 1.69987 1.29544 1.18076 1.34621 0.86357 0.78298 0.80499 0.81705 1.19666 1.20781 1.20805 0.92049 0.91243 0.91276 0.84657 0.84102 0.84987 0.85125 0.85016 0.84217 0.84620 0.92748 0.90879 0.91028 0.77879 0.95711 0.95698 0.92500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 8.89 37.16 0.33 -1.11 16 2 C 0.18 2.33 2.95 -69.09 -0.20 2.13 16 3 H 0.11 1.68 6.66 -51.93 -0.35 1.34 16 4 C -0.03 -0.37 4.96 -104.63 -0.52 -0.89 16 5 C -0.12 -1.41 9.67 -39.58 -0.38 -1.79 16 6 C -0.02 -0.24 9.47 -39.58 -0.37 -0.61 16 7 C -0.66 -6.33 5.66 -39.58 -0.22 -6.55 16 8 S 2.50 20.09 5.80 -107.50 -0.62 19.47 16 9 C -0.65 -2.13 10.80 101.05 1.09 -1.03 16 10 O -0.94 -10.85 17.13 -57.54 -0.99 -11.83 16 11 O -0.94 -10.60 17.13 -57.54 -0.99 -11.59 16 12 C -0.03 -0.25 9.47 -39.58 -0.37 -0.62 16 13 C -0.13 -1.36 8.14 -39.58 -0.32 -1.68 16 14 N -0.63 -9.53 2.75 -181.01 -0.50 -10.03 16 15 C 0.07 0.80 8.11 59.84 0.49 1.29 16 16 C 0.70 14.48 8.28 -86.92 -0.72 13.76 16 17 O -0.60 -14.77 15.68 5.29 0.08 -14.69 16 18 N -0.73 -15.79 5.42 -66.42 -0.36 -16.15 16 19 C 0.27 7.18 5.43 -5.19 -0.03 7.15 16 20 C -0.54 -14.82 9.28 -34.44 -0.32 -15.14 16 21 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 22 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 23 N -0.88 -26.28 13.29 55.43 0.74 -25.54 16 24 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 25 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 26 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 27 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 28 H 0.06 0.47 6.03 -51.93 -0.31 0.15 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.14 1.40 7.95 -52.49 -0.42 0.98 16 32 H 0.14 1.17 7.57 -52.49 -0.40 0.77 16 33 H 0.13 0.25 8.14 -51.92 -0.42 -0.17 16 34 H 0.13 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.13 0.23 8.14 -51.93 -0.42 -0.19 16 36 H 0.14 1.04 7.57 -52.49 -0.40 0.65 16 37 H 0.14 1.11 4.97 -52.49 -0.26 0.85 16 38 H 0.05 0.58 7.10 -51.93 -0.37 0.21 16 39 H 0.07 0.82 6.31 -51.93 -0.33 0.49 16 40 H 0.07 0.57 5.44 -51.93 -0.28 0.29 16 41 H 0.39 7.26 6.03 -40.82 -0.25 7.02 16 42 H 0.02 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 373.17 15.07 5.62 5.62 Total: -1.00 -39.12 373.17 -9.54 -48.66 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -5.85 Total: 3.53 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: -1.66 Total: -3.43 kcal Atomic # 7 Polarization: -51.59 SS G_CDS: -0.12 Total: -51.72 kcal Atomic # 8 Polarization: -36.23 SS G_CDS: -1.89 Total: -38.11 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: 20.09 SS G_CDS: -0.62 Total: 19.47 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -39.12 -9.54 -48.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426417356.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.060 kcal (2) G-P(sol) polarization free energy of solvation -39.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds