Wall clock time and date at job start Wed Apr 1 2020 00:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47425 * 2 1 4 4 C 1.50694 * 109.47156 * 239.99819 * 2 1 3 5 5 C 1.38238 * 120.00392 * 115.17120 * 4 2 1 6 6 C 1.38238 * 120.00178 * 179.81157 * 5 4 2 7 7 C 1.38228 * 119.99779 * 0.41791 * 6 5 4 8 8 S 1.76199 * 119.99866 * 179.78950 * 7 6 5 9 9 C 1.81400 * 104.45220 * 270.02579 * 8 7 6 10 10 O 1.42104 * 104.27832 * 26.09439 * 8 7 6 11 11 O 1.42103 * 104.27766 * 153.95298 * 8 7 6 12 12 C 1.38239 * 120.00475 * 359.81593 * 7 6 5 13 13 C 1.38235 * 119.99873 * 295.44788 * 4 2 1 14 14 N 1.46504 * 109.47186 * 119.99801 * 2 1 3 15 15 C 1.46495 * 120.00127 * 53.82548 * 14 2 1 16 16 C 1.34775 * 119.99760 * 233.82726 * 14 2 1 17 17 O 1.21582 * 120.00220 * 0.02562 * 16 14 2 18 18 N 1.34774 * 119.99880 * 180.02562 * 16 14 2 19 19 C 1.46502 * 120.00064 * 179.97438 * 18 16 14 20 20 C 1.50706 * 109.47053 * 179.97438 * 19 18 16 21 21 H 1.08001 * 119.99693 * 0.02562 * 20 19 18 22 22 C 1.37869 * 120.00045 * 179.97438 * 20 19 18 23 23 N 1.31513 * 120.00125 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00211 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46917 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.46942 * 119.99812 * 24 22 20 27 27 H 1.48498 * 109.47393 * 240.00105 * 24 22 20 28 28 H 1.08995 * 109.47405 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47165 * 300.00144 * 1 2 3 30 30 H 1.08999 * 109.47083 * 59.99879 * 1 2 3 31 31 H 1.07998 * 119.99543 * 359.97438 * 5 4 2 32 32 H 1.07998 * 119.99485 * 180.21068 * 6 5 4 33 33 H 1.09002 * 109.47166 * 59.99399 * 9 8 7 34 34 H 1.08996 * 109.47523 * 179.97438 * 9 8 7 35 35 H 1.08996 * 109.46917 * 300.00007 * 9 8 7 36 36 H 1.07995 * 119.99958 * 179.97438 * 12 7 6 37 37 H 1.07992 * 120.00353 * 359.97438 * 13 4 2 38 38 H 1.09003 * 109.46958 * 89.06196 * 15 14 2 39 39 H 1.08995 * 109.47299 * 209.07006 * 15 14 2 40 40 H 1.09003 * 109.46920 * 329.06893 * 15 14 2 41 41 H 0.97001 * 119.99836 * 359.97438 * 18 16 14 42 42 H 1.08994 * 109.47268 * 299.99381 * 19 18 16 43 43 H 1.08997 * 109.47229 * 60.00317 * 19 18 16 44 44 H 0.97005 * 120.00333 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 6 2.7428 -0.0132 -2.1896 6 6 3.2069 -0.6657 -3.3164 7 6 2.9531 -2.0136 -3.4881 8 16 3.5399 -2.8442 -4.9270 9 6 2.1947 -2.6689 -6.1312 10 8 4.6726 -2.0873 -5.3312 11 8 3.6716 -4.1994 -4.5202 12 6 2.2385 -2.7099 -2.5313 13 6 1.7777 -2.0582 -1.4027 14 7 2.0183 -0.6906 1.1962 15 6 1.5565 -2.0476 1.4985 16 6 2.8925 -0.0774 2.0186 17 8 3.2754 1.0490 1.7680 18 7 3.3421 -0.7128 3.1188 19 6 4.2927 -0.0465 4.0125 20 6 4.6333 -0.9645 5.1581 21 1 4.1866 -1.9462 5.2146 22 6 5.5159 -0.5516 6.1335 23 7 6.0601 0.6437 6.0644 24 14 5.9386 -1.6897 7.5532 25 1 5.1991 -2.9683 7.3996 26 1 7.3988 -1.9598 7.5531 27 1 5.5544 -1.0459 8.8350 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 2.9374 1.0409 -2.0573 32 1 3.7649 -0.1216 -4.0640 33 1 2.0103 -1.6111 -6.3186 34 1 2.4752 -3.1592 -7.0634 35 1 1.2902 -3.1307 -5.7353 36 1 2.0399 -3.7629 -2.6658 37 1 1.2192 -2.6021 -0.6553 38 1 2.2145 -2.7710 1.0169 39 1 1.5712 -2.2046 2.5769 40 1 0.5402 -2.1768 1.1263 41 1 3.0363 -1.6114 3.3189 42 1 5.2002 0.1981 3.4604 43 1 3.8459 0.8685 4.4011 44 1 6.6808 0.9344 6.7509 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426417356.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:06:34 Heat of formation + Delta-G solvation = -90.856552 kcal Electronic energy + Delta-G solvation = -27165.478227 eV Core-core repulsion = 23209.662814 eV Total energy + Delta-G solvation = -3955.815412 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.56821 -40.20428 -38.13291 -37.33669 -36.94550 -36.20450 -34.59605 -33.19899 -32.09024 -30.70496 -30.14614 -29.11202 -28.02923 -25.36615 -24.50167 -23.82710 -22.36104 -20.81112 -20.03275 -19.62909 -18.76545 -18.08027 -17.70148 -17.14542 -17.07167 -16.88869 -16.58307 -16.24249 -15.77395 -15.58615 -15.21765 -15.00325 -14.69029 -14.59942 -14.21144 -14.07395 -13.91619 -13.89927 -13.82198 -13.62802 -13.24346 -13.22770 -13.13040 -13.00838 -12.87788 -12.78863 -12.74892 -12.30685 -12.21745 -12.07856 -11.94928 -11.57418 -11.46255 -11.18278 -10.83343 -10.21506 -10.09348 -10.02186 -9.49146 -8.30131 -6.46851 -0.84523 -0.24267 0.30058 1.42068 1.44052 1.56870 1.70650 1.93714 2.16277 2.36413 2.46759 3.04905 3.06284 3.19793 3.22257 3.51531 3.73256 3.93722 4.07386 4.14149 4.16017 4.20283 4.28399 4.32303 4.50502 4.59964 4.67440 4.75459 4.80327 4.86906 4.95268 4.98887 5.03698 5.06605 5.12161 5.23279 5.24871 5.41399 5.45144 5.54200 5.71178 5.82671 5.83040 6.05765 6.64611 7.13858 7.23435 7.65057 8.82537 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015865 B = 0.002414 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.451337 B =11597.026329 C =12309.898180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.180 3.820 3 H 0.081 0.919 4 C -0.048 4.048 5 C -0.144 4.144 6 C -0.034 4.034 7 C -0.665 4.665 8 S 2.503 3.497 9 C -0.619 4.619 10 O -0.983 6.983 11 O -0.977 6.977 12 C -0.031 4.031 13 C -0.135 4.135 14 N -0.622 5.622 15 C 0.061 3.939 16 C 0.691 3.309 17 O -0.647 6.647 18 N -0.722 5.722 19 C 0.286 3.714 20 C -0.553 4.553 21 H 0.083 0.917 22 C 0.003 3.997 23 N -0.931 5.931 24 Si 0.987 3.013 25 H -0.252 1.252 26 H -0.280 1.280 27 H -0.277 1.277 28 H 0.086 0.914 29 H 0.059 0.941 30 H 0.087 0.913 31 H 0.130 0.870 32 H 0.152 0.848 33 H 0.153 0.847 34 H 0.154 0.846 35 H 0.158 0.842 36 H 0.163 0.837 37 H 0.159 0.841 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.113 0.887 41 H 0.404 0.596 42 H -0.019 1.019 43 H -0.014 1.014 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.588 -10.254 -24.544 31.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.077 3.923 3 H 0.099 0.901 4 C -0.050 4.050 5 C -0.164 4.164 6 C -0.052 4.052 7 C -0.751 4.751 8 S 2.687 3.313 9 C -0.773 4.773 10 O -0.980 6.980 11 O -0.974 6.974 12 C -0.050 4.050 13 C -0.153 4.153 14 N -0.359 5.359 15 C -0.080 4.080 16 C 0.392 3.608 17 O -0.530 6.530 18 N -0.377 5.377 19 C 0.162 3.838 20 C -0.591 4.591 21 H 0.101 0.899 22 C -0.197 4.197 23 N -0.569 5.569 24 Si 0.810 3.190 25 H -0.175 1.175 26 H -0.205 1.205 27 H -0.203 1.203 28 H 0.105 0.895 29 H 0.078 0.922 30 H 0.106 0.894 31 H 0.148 0.852 32 H 0.169 0.831 33 H 0.172 0.828 34 H 0.172 0.828 35 H 0.176 0.824 36 H 0.180 0.820 37 H 0.176 0.824 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.131 0.869 41 H 0.241 0.759 42 H -0.001 1.001 43 H 0.004 0.996 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -16.382 -9.748 -24.648 31.160 hybrid contribution 0.153 0.397 1.330 1.396 sum -16.229 -9.352 -23.319 29.910 Atomic orbital electron populations 1.22107 0.90682 1.04302 1.03420 1.19983 0.96249 0.95868 0.80243 0.90053 1.20611 0.94603 0.95310 0.94427 1.21397 0.98893 1.01181 0.94889 1.21091 0.93933 0.92777 0.97423 1.30697 1.16225 1.05955 1.22214 1.04931 0.77273 0.73105 0.75980 1.29997 1.17405 1.14438 1.15472 1.93538 1.48963 1.72586 1.82961 1.93536 1.86774 1.34977 1.82117 1.21250 0.91492 1.00450 0.91800 1.21614 1.01412 0.93632 0.98687 1.47055 1.46466 1.17806 1.24549 1.22203 1.02131 0.81368 1.02317 1.16295 0.79740 0.84073 0.80711 1.90814 1.64555 1.20899 1.76712 1.45456 1.48090 1.19772 1.24372 1.18407 0.85716 0.92378 0.87270 1.21597 1.27640 1.02138 1.07726 0.89888 1.26084 0.95113 0.97013 1.01452 1.70152 1.30338 1.20474 1.35982 0.85083 0.78019 0.78622 0.77300 1.17548 1.20549 1.20265 0.89480 0.92195 0.89424 0.85195 0.83052 0.82845 0.82813 0.82395 0.81965 0.82386 0.91637 0.90864 0.86920 0.75904 1.00055 0.99588 0.92220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 8.89 71.98 0.64 -1.78 16 2 C 0.18 4.56 2.95 44.24 0.13 4.69 16 3 H 0.08 2.59 6.66 -2.38 -0.02 2.57 16 4 C -0.05 -1.09 4.96 -19.87 -0.10 -1.19 16 5 C -0.14 -3.34 9.67 22.27 0.22 -3.13 16 6 C -0.03 -0.68 9.47 22.27 0.21 -0.47 16 7 C -0.67 -11.79 5.66 22.27 0.13 -11.66 16 8 S 2.50 36.52 5.80 -56.49 -0.33 36.19 16 9 C -0.62 -1.39 10.80 113.37 1.22 -0.16 16 10 O -0.98 -22.61 17.13 -127.65 -2.19 -24.79 16 11 O -0.98 -20.93 17.13 -127.65 -2.19 -23.12 16 12 C -0.03 -0.52 9.47 22.27 0.21 -0.31 16 13 C -0.13 -2.41 8.14 22.27 0.18 -2.23 16 14 N -0.62 -18.55 2.75 -844.87 -2.32 -20.87 16 15 C 0.06 1.21 8.11 127.77 1.04 2.24 16 16 C 0.69 29.93 8.28 179.06 1.48 31.41 16 17 O -0.65 -34.34 15.68 -3.97 -0.06 -34.40 16 18 N -0.72 -32.40 5.42 -482.30 -2.61 -35.01 16 19 C 0.29 16.29 5.43 85.63 0.46 16.76 16 20 C -0.55 -30.71 9.28 25.60 0.24 -30.48 16 21 H 0.08 4.16 7.60 -2.91 -0.02 4.14 16 22 C 0.00 0.16 5.46 84.65 0.46 0.63 16 23 N -0.93 -57.11 13.29 21.44 0.28 -56.83 16 24 Si 0.99 42.86 29.54 68.60 2.03 44.89 16 25 H -0.25 -10.06 7.11 99.48 0.71 -9.35 16 26 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 27 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 28 H 0.09 0.98 6.03 -2.39 -0.01 0.96 16 29 H 0.06 1.11 8.14 -2.39 -0.02 1.10 16 30 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.13 2.98 7.95 -2.91 -0.02 2.96 16 32 H 0.15 2.57 7.57 -2.91 -0.02 2.55 16 33 H 0.15 -0.13 8.14 -2.39 -0.02 -0.15 16 34 H 0.15 -0.16 8.14 -2.39 -0.02 -0.18 16 35 H 0.16 -0.30 8.14 -2.39 -0.02 -0.32 16 36 H 0.16 1.92 7.57 -2.91 -0.02 1.90 16 37 H 0.16 1.97 4.97 -2.91 -0.01 1.96 16 38 H 0.07 1.20 7.10 -2.39 -0.02 1.18 16 39 H 0.07 1.47 6.31 -2.39 -0.02 1.46 16 40 H 0.11 1.31 5.44 -2.39 -0.01 1.30 16 41 H 0.40 15.04 6.03 -92.71 -0.56 14.48 16 42 H -0.02 -1.20 8.14 -2.39 -0.02 -1.22 16 43 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 44 H 0.27 15.32 8.31 -92.70 -0.77 14.55 16 Total: -1.00 -91.46 373.17 -0.39 -91.85 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: 0.48 Total: 17.77 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: 6.52 Total: 4.33 kcal Atomic # 7 Polarization: -108.06 SS G_CDS: -4.65 Total: -112.71 kcal Atomic # 8 Polarization: -77.88 SS G_CDS: -4.43 Total: -82.31 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Atomic # 16 Polarization: 36.52 SS G_CDS: -0.33 Total: 36.19 kcal Total: -91.46 -0.39 -91.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426417356.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.994 kcal (2) G-P(sol) polarization free energy of solvation -91.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds