Wall clock time and date at job start Wed Apr 1 2020 00:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46879 * 2 1 4 4 C 1.50700 * 109.47305 * 120.00713 * 2 1 3 5 5 C 1.38240 * 119.99499 * 268.16482 * 4 2 1 6 6 C 1.38235 * 119.99560 * 180.02562 * 5 4 2 7 7 C 1.38237 * 120.00410 * 359.97438 * 6 5 4 8 8 S 1.76195 * 120.00192 * 179.97438 * 7 6 5 9 9 C 1.81403 * 104.44828 * 90.00234 * 8 7 6 10 10 O 1.42100 * 104.27826 * 333.93561 * 8 7 6 11 11 O 1.42095 * 104.27892 * 206.07310 * 8 7 6 12 12 C 1.38233 * 119.99442 * 0.25486 * 7 6 5 13 13 C 1.38231 * 120.00358 * 88.19053 * 4 2 1 14 14 N 1.46504 * 109.46790 * 240.00625 * 2 1 3 15 15 C 1.46503 * 120.00147 * 319.83356 * 14 2 1 16 16 C 1.34779 * 119.99751 * 139.83962 * 14 2 1 17 17 O 1.21583 * 120.00053 * 359.97438 * 16 14 2 18 18 N 1.34780 * 119.99650 * 179.97438 * 16 14 2 19 19 C 1.46504 * 119.99777 * 179.97438 * 18 16 14 20 20 C 1.50698 * 109.46718 * 180.02562 * 19 18 16 21 21 H 1.07996 * 120.00236 * 359.97438 * 20 19 18 22 22 C 1.37885 * 119.99728 * 179.97438 * 20 19 18 23 23 N 1.31509 * 120.00138 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 119.99922 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.46885 * 89.99890 * 24 22 20 26 26 H 1.48496 * 109.47379 * 210.00039 * 24 22 20 27 27 H 1.48509 * 109.46988 * 330.00498 * 24 22 20 28 28 H 1.09004 * 109.46906 * 299.98998 * 1 2 3 29 29 H 1.08990 * 109.47564 * 59.99833 * 1 2 3 30 30 H 1.09000 * 109.46879 * 179.97438 * 1 2 3 31 31 H 1.07999 * 120.00122 * 359.97438 * 5 4 2 32 32 H 1.08007 * 119.99828 * 179.97438 * 6 5 4 33 33 H 1.09005 * 109.47003 * 300.00171 * 9 8 7 34 34 H 1.09005 * 109.47281 * 180.02562 * 9 8 7 35 35 H 1.08993 * 109.47371 * 59.99867 * 9 8 7 36 36 H 1.08003 * 119.99543 * 179.72249 * 12 7 6 37 37 H 1.07999 * 119.99859 * 359.97438 * 13 4 2 38 38 H 1.08999 * 109.47070 * 95.74952 * 15 14 2 39 39 H 1.08999 * 109.47034 * 215.75560 * 15 14 2 40 40 H 1.08999 * 109.46660 * 335.75061 * 15 14 2 41 41 H 0.97002 * 120.00182 * 359.97438 * 18 16 14 42 42 H 1.09002 * 109.46737 * 299.99556 * 19 18 16 43 43 H 1.08994 * 109.46766 * 59.99620 * 19 18 16 44 44 H 0.96993 * 120.00129 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 2.2989 0.0062 2.3820 6 6 2.7603 -0.6455 3.5104 7 6 2.9546 -2.0139 3.4875 8 16 3.5432 -2.8444 4.9256 9 6 2.0396 -3.3018 5.8315 10 8 4.2682 -1.8482 5.6336 11 8 4.1926 -4.0028 4.4202 12 6 2.6925 -2.7299 2.3344 13 6 2.2272 -2.0789 1.2072 14 7 2.0183 -0.6905 -1.1963 15 6 1.3483 -1.9061 -1.6652 16 6 3.0839 -0.2075 -1.8654 17 8 3.6397 0.8015 -1.4764 18 7 3.5334 -0.8431 -2.9656 19 6 4.6914 -0.3177 -3.6933 20 6 4.9868 -1.2051 -4.8750 21 1 4.3736 -2.0736 -5.0648 22 6 6.0400 -0.9080 -5.7139 23 7 6.2981 -1.6825 -6.7449 24 14 7.1001 0.5947 -5.3860 25 1 8.2334 0.2179 -4.5034 26 1 7.6269 1.1190 -6.6716 27 1 6.2827 1.6419 -4.7221 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 2.1475 1.0754 2.3998 32 1 2.9689 -0.0854 4.4101 33 1 1.4786 -2.4015 6.0824 34 1 2.3124 -3.8264 6.7472 35 1 1.4242 -3.9517 5.2095 36 1 2.8486 -3.7984 2.3151 37 1 2.0189 -2.6388 0.3075 38 1 0.6272 -1.6474 -2.4405 39 1 2.0885 -2.5948 -2.0725 40 1 0.8309 -2.3804 -0.8313 41 1 3.0902 -1.6483 -3.2757 42 1 4.4736 0.6915 -4.0427 43 1 5.5566 -0.2942 -3.0308 44 1 7.0387 -1.4733 -7.3352 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426417359.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:06:37 Heat of formation + Delta-G solvation = -55.719137 kcal Electronic energy + Delta-G solvation = -27322.002920 eV Core-core repulsion = 23367.711181 eV Total energy + Delta-G solvation = -3954.291740 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.45199 -39.05938 -37.37718 -36.28699 -36.11209 -34.38887 -32.86109 -31.97056 -31.21845 -30.09264 -29.63801 -27.74160 -27.09850 -24.16715 -23.12191 -22.43212 -21.05012 -19.44868 -19.33665 -18.20836 -18.06192 -16.61159 -16.56210 -16.40338 -16.25532 -15.78935 -15.23975 -14.95603 -14.57028 -14.44611 -14.03845 -13.90227 -13.71834 -13.62542 -13.58064 -13.23685 -13.13951 -12.95350 -12.57412 -12.48991 -12.35253 -12.24005 -12.18739 -12.16003 -11.95201 -11.56051 -11.36637 -11.24907 -10.98127 -10.84390 -10.73903 -9.96326 -9.61500 -9.46441 -9.34372 -9.24556 -8.78336 -8.65769 -8.04516 -6.20766 -4.22760 -0.26329 0.58700 1.10254 2.56604 2.89617 3.22361 3.28917 3.35716 3.44090 3.65902 3.68169 3.78802 4.34116 4.34676 4.39124 4.42427 4.60018 4.63606 4.66903 4.90302 4.95050 5.03798 5.11026 5.15003 5.18221 5.23108 5.33997 5.42024 5.51246 5.59375 5.66522 5.75714 5.82185 5.87158 5.98685 6.23519 6.53336 6.61646 6.77650 7.10963 7.20385 7.33926 7.45968 8.24098 8.62365 8.78237 9.13021 9.40259 10.91162 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014348 B = 0.002673 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.011688 B =10472.337093 C =11309.472757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.188 3.812 3 H 0.112 0.888 4 C -0.031 4.031 5 C -0.131 4.131 6 C -0.023 4.023 7 C -0.666 4.666 8 S 2.502 3.498 9 C -0.650 4.650 10 O -0.939 6.939 11 O -0.937 6.937 12 C -0.023 4.023 13 C -0.136 4.136 14 N -0.635 5.635 15 C 0.071 3.929 16 C 0.698 3.302 17 O -0.598 6.598 18 N -0.719 5.719 19 C 0.237 3.763 20 C -0.542 4.542 21 H 0.078 0.922 22 C 0.078 3.922 23 N -0.893 5.893 24 Si 0.877 3.123 25 H -0.273 1.273 26 H -0.283 1.283 27 H -0.260 1.260 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.133 0.867 32 H 0.141 0.859 33 H 0.131 0.869 34 H 0.130 0.870 35 H 0.131 0.869 36 H 0.140 0.860 37 H 0.138 0.862 38 H 0.058 0.942 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.393 0.607 42 H 0.023 0.977 43 H 0.019 0.981 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.057 -2.861 23.855 29.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.083 3.917 3 H 0.130 0.870 4 C -0.032 4.032 5 C -0.150 4.150 6 C -0.042 4.042 7 C -0.754 4.754 8 S 2.682 3.318 9 C -0.800 4.800 10 O -0.936 6.936 11 O -0.935 6.935 12 C -0.042 4.042 13 C -0.155 4.155 14 N -0.374 5.374 15 C -0.072 4.072 16 C 0.399 3.601 17 O -0.477 6.477 18 N -0.372 5.372 19 C 0.115 3.885 20 C -0.580 4.580 21 H 0.096 0.904 22 C -0.126 4.126 23 N -0.530 5.530 24 Si 0.703 3.297 25 H -0.198 1.198 26 H -0.209 1.209 27 H -0.185 1.185 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.151 0.849 32 H 0.158 0.842 33 H 0.150 0.850 34 H 0.149 0.851 35 H 0.150 0.850 36 H 0.158 0.842 37 H 0.156 0.844 38 H 0.076 0.924 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.228 0.772 42 H 0.041 0.959 43 H 0.036 0.964 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -15.631 -2.298 24.122 28.835 hybrid contribution -0.355 0.415 -0.532 0.762 sum -15.985 -1.884 23.590 28.558 Atomic orbital electron populations 1.22114 0.93116 1.02867 1.03081 1.19816 0.94003 0.97183 0.80725 0.87033 1.20771 0.93079 0.94269 0.95099 1.21124 1.00798 1.00426 0.92674 1.20879 0.92148 0.92153 0.99015 1.30417 1.20628 1.05708 1.18605 1.05077 0.76796 0.74791 0.75163 1.30234 1.22175 1.12716 1.14880 1.93586 1.67905 1.58983 1.73162 1.93595 1.71161 1.49926 1.78784 1.20931 0.91806 1.00102 0.91339 1.21422 1.00736 0.94459 0.98856 1.47044 1.32705 1.28846 1.28769 1.21861 0.98154 0.87168 1.00042 1.16040 0.79926 0.83350 0.80788 1.90859 1.60018 1.26675 1.70196 1.45523 1.34621 1.29976 1.27070 1.19382 0.82837 0.95229 0.91093 1.21064 1.15863 1.12035 1.09054 0.90351 1.24773 0.96750 0.96601 0.94438 1.69872 1.29898 1.38005 1.15223 0.86817 0.81230 0.83650 0.77998 1.19819 1.20920 1.18460 0.91091 0.91145 0.91844 0.84870 0.84171 0.85047 0.85144 0.85014 0.84192 0.84442 0.92382 0.91029 0.90601 0.77234 0.95877 0.96354 0.92255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 8.81 37.16 0.33 -0.92 16 2 C 0.19 2.23 2.78 -69.08 -0.19 2.04 16 3 H 0.11 1.54 7.07 -51.93 -0.37 1.18 16 4 C -0.03 -0.35 5.01 -104.62 -0.52 -0.88 16 5 C -0.13 -1.38 9.69 -39.58 -0.38 -1.77 16 6 C -0.02 -0.23 9.47 -39.58 -0.37 -0.60 16 7 C -0.67 -6.53 5.66 -39.58 -0.22 -6.75 16 8 S 2.50 20.63 5.80 -107.50 -0.62 20.01 16 9 C -0.65 -2.21 10.80 101.05 1.09 -1.11 16 10 O -0.94 -10.85 17.13 -57.54 -0.99 -11.83 16 11 O -0.94 -11.09 17.12 -57.54 -0.98 -12.07 16 12 C -0.02 -0.24 9.47 -39.59 -0.37 -0.61 16 13 C -0.14 -1.51 9.01 -39.59 -0.36 -1.87 16 14 N -0.63 -8.95 2.46 -181.00 -0.45 -9.39 16 15 C 0.07 0.72 7.64 59.85 0.46 1.18 16 16 C 0.70 13.77 8.28 -86.91 -0.72 13.05 16 17 O -0.60 -14.12 15.78 5.29 0.08 -14.03 16 18 N -0.72 -14.93 5.42 -66.41 -0.36 -15.29 16 19 C 0.24 5.96 4.50 -5.19 -0.02 5.93 16 20 C -0.54 -14.97 9.83 -34.44 -0.34 -15.31 16 21 H 0.08 2.24 7.84 -52.49 -0.41 1.83 16 22 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 23 N -0.89 -26.61 13.96 55.43 0.77 -25.83 16 24 Si 0.88 21.75 27.47 -169.99 -4.67 17.08 16 25 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 27 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.44 6.71 -51.93 -0.35 0.09 16 31 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 32 H 0.14 1.10 7.57 -52.48 -0.40 0.70 16 33 H 0.13 0.25 8.14 -51.92 -0.42 -0.18 16 34 H 0.13 0.27 8.14 -51.92 -0.42 -0.15 16 35 H 0.13 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.14 1.21 7.56 -52.48 -0.40 0.81 16 37 H 0.14 1.37 4.60 -52.49 -0.24 1.13 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.76 6.68 -51.93 -0.35 0.41 16 40 H 0.08 0.57 5.09 -51.93 -0.26 0.30 16 41 H 0.39 7.15 6.18 -40.82 -0.25 6.90 16 42 H 0.02 0.61 7.20 -51.93 -0.37 0.24 16 43 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 44 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 371.60 15.07 5.60 5.60 Total: -1.00 -39.45 371.60 -9.27 -48.71 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -5.92 Total: 2.55 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: -1.73 Total: -5.49 kcal Atomic # 7 Polarization: -50.48 SS G_CDS: -0.03 Total: -50.51 kcal Atomic # 8 Polarization: -36.05 SS G_CDS: -1.89 Total: -37.94 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Atomic # 16 Polarization: 20.63 SS G_CDS: -0.62 Total: 20.01 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -39.45 -9.27 -48.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426417359.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.008 kcal (2) G-P(sol) polarization free energy of solvation -39.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds