Wall clock time and date at job start Wed Apr 1 2020 00:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.70684 * 2 1 4 4 C 1.53296 * 109.67999 * 239.46374 * 2 1 3 5 5 O 1.42961 * 109.22107 * 187.97118 * 4 2 1 6 6 C 1.42968 * 114.16849 * 62.58076 * 5 4 2 7 7 H 1.09004 * 109.50661 * 57.34114 * 6 5 4 8 8 C 1.52994 * 109.51214 * 177.44325 * 6 5 4 9 9 C 1.53712 * 109.14662 * 297.28925 * 6 5 4 10 10 N 1.47146 * 109.68564 * 120.53292 * 2 1 3 11 11 S 1.65603 * 120.98394 * 350.24282 * 10 2 1 12 12 O 1.42092 * 106.40463 * 171.70334 * 11 10 2 13 13 O 1.42102 * 106.40251 * 38.77632 * 11 10 2 14 14 N 1.65601 * 107.21364 * 285.24152 * 11 10 2 15 15 C 1.39684 * 120.00065 * 297.19374 * 14 11 10 16 16 C 1.39334 * 119.95287 * 313.72155 * 15 14 11 17 17 C 1.38472 * 120.42624 * 180.02562 * 16 15 14 18 18 C 1.37679 * 120.32830 * 0.02562 * 17 16 15 19 19 C 1.40753 * 119.89048 * 359.70267 * 18 17 16 20 20 C 1.41408 * 120.20934 * 180.27355 * 19 18 17 21 21 H 1.08006 * 120.00330 * 328.23945 * 20 19 18 22 22 C 1.39926 * 120.00161 * 148.23880 * 20 19 18 23 23 N 1.30833 * 120.00425 * 163.70450 * 22 20 19 24 24 Si 1.86805 * 120.00071 * 343.70247 * 22 20 19 25 25 H 1.48496 * 109.46765 * 89.57104 * 24 22 20 26 26 H 1.48496 * 109.47164 * 209.57289 * 24 22 20 27 27 H 1.48506 * 109.46930 * 329.57267 * 24 22 20 28 28 C 1.38284 * 119.95351 * 133.74316 * 15 14 11 29 29 H 1.09005 * 109.46626 * 292.17934 * 1 2 3 30 30 H 1.09004 * 109.47349 * 52.18069 * 1 2 3 31 31 H 1.09002 * 109.46743 * 172.18127 * 1 2 3 32 32 H 1.08995 * 109.51155 * 307.89725 * 4 2 1 33 33 H 1.08996 * 109.51324 * 68.00004 * 4 2 1 34 34 H 1.08997 * 109.47404 * 60.00293 * 8 6 5 35 35 H 1.09006 * 109.46761 * 180.02562 * 8 6 5 36 36 H 1.08999 * 109.47362 * 300.00049 * 8 6 5 37 37 H 1.08998 * 109.83740 * 292.85398 * 9 6 5 38 38 H 1.09000 * 109.74724 * 172.16217 * 9 6 5 39 39 H 0.97002 * 120.00257 * 117.19059 * 14 11 10 40 40 H 1.08002 * 119.77957 * 0.04327 * 16 15 14 41 41 H 1.08008 * 119.83404 * 179.97438 * 17 16 15 42 42 H 1.07997 * 120.05919 * 179.97438 * 18 17 16 43 43 H 0.96995 * 120.00135 * 180.02562 * 23 22 20 44 44 H 1.07997 * 120.16358 * 359.95659 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0262 0.0000 4 6 2.0463 -0.7334 -1.2432 5 8 3.4635 -0.8910 -1.1420 6 6 3.8860 -1.6894 -0.0339 7 1 3.4211 -2.6734 -0.0959 8 6 5.4082 -1.8406 -0.0639 9 6 3.4649 -1.0000 1.2738 10 7 2.0257 -0.7039 1.1933 11 16 0.9954 -1.1439 2.4130 12 8 1.7483 -1.9605 3.2991 13 8 -0.2050 -1.5766 1.7877 14 7 0.6153 0.2314 3.2535 15 6 1.6166 0.9422 3.9194 16 6 2.5431 0.2644 4.7090 17 6 3.5394 0.9592 5.3739 18 6 3.6251 2.3288 5.2621 19 6 2.6997 3.0266 4.4634 20 6 2.7850 4.4327 4.3393 21 1 3.1538 5.0262 5.1628 22 6 2.3915 5.0551 3.1494 23 7 2.1637 6.3433 3.1293 24 14 2.1914 4.0468 1.5897 25 1 0.7987 3.5387 1.5041 26 1 2.4808 4.8992 0.4087 27 1 3.1356 2.9009 1.6165 28 6 1.6867 2.3176 3.7943 29 1 -0.3633 0.3880 0.9517 30 1 -0.3634 0.6301 -0.8118 31 1 -0.3633 -1.0181 -0.1398 32 1 1.5747 -1.7138 -1.3096 33 1 1.8065 -0.1530 -2.1341 34 1 5.8724 -0.8565 0.0000 35 1 5.7295 -2.4498 0.7810 36 1 5.7071 -2.3237 -0.9941 37 1 4.0239 -0.0729 1.3999 38 1 3.6567 -1.6626 2.1178 39 1 -0.3026 0.5435 3.2834 40 1 2.4839 -0.8099 4.8029 41 1 4.2524 0.4242 5.9838 42 1 4.4036 2.8664 5.7829 43 1 1.8906 6.7747 2.3045 44 1 0.9694 2.8440 3.1822 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451109901.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:26 Heat of formation + Delta-G solvation = -90.167064 kcal Electronic energy + Delta-G solvation = -29770.425276 eV Core-core repulsion = 25814.639762 eV Total energy + Delta-G solvation = -3955.785514 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.62474 -38.36398 -37.35516 -35.80482 -35.33314 -34.70729 -33.44586 -33.30417 -30.43760 -30.18326 -28.20429 -26.40997 -25.54693 -25.26200 -22.48871 -21.71289 -21.12659 -20.97575 -19.19769 -17.88196 -17.49196 -17.12758 -16.89691 -16.42693 -16.08081 -15.47998 -15.11436 -14.88002 -14.72331 -14.48640 -14.43553 -13.85316 -13.33332 -13.18385 -12.97125 -12.84020 -12.54399 -12.43993 -12.31838 -12.21671 -12.09688 -11.95851 -11.71182 -11.69326 -11.49105 -11.36313 -11.03775 -10.92256 -10.87819 -10.69291 -10.52589 -10.25833 -10.09648 -9.88215 -9.56107 -9.22195 -8.86947 -7.75598 -7.48135 -7.01649 -4.59810 0.64310 2.41396 2.53913 2.84230 2.99152 3.11226 3.20949 3.56434 3.59636 3.88048 4.35870 4.41608 4.50328 4.60456 4.83126 4.93746 4.97978 5.11905 5.20313 5.25539 5.41695 5.44523 5.52070 5.58078 5.64962 5.69127 5.81985 5.89584 5.97256 6.03119 6.10137 6.25628 6.29719 6.43938 6.47348 6.56269 6.78574 6.85737 7.04944 7.13167 7.38045 7.55617 7.63794 7.74600 8.01750 8.27108 8.53812 8.70741 10.00901 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011455 B = 0.005618 C = 0.005105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2443.852668 B = 4982.772472 C = 5483.868643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.115 3.885 3 H 0.083 0.917 4 C 0.060 3.940 5 O -0.375 6.375 6 C 0.077 3.923 7 H 0.062 0.938 8 C -0.145 4.145 9 C 0.089 3.911 10 N -1.000 6.000 11 S 2.788 3.212 12 O -0.970 6.970 13 O -0.982 6.982 14 N -1.065 6.065 15 C 0.172 3.828 16 C -0.264 4.264 17 C -0.069 4.069 18 C -0.208 4.208 19 C 0.103 3.897 20 C -0.448 4.448 21 H 0.093 0.907 22 C 0.084 3.916 23 N -0.809 5.809 24 Si 0.907 3.093 25 H -0.269 1.269 26 H -0.291 1.291 27 H -0.245 1.245 28 C -0.245 4.245 29 H 0.060 0.940 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.058 0.942 33 H 0.105 0.895 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.082 0.918 38 H 0.107 0.893 39 H 0.416 0.584 40 H 0.127 0.873 41 H 0.101 0.899 42 H 0.103 0.897 43 H 0.285 0.715 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.343 -12.484 -8.442 15.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.009 3.991 3 H 0.101 0.899 4 C -0.018 4.018 5 O -0.294 6.294 6 C 0.018 3.982 7 H 0.080 0.920 8 C -0.202 4.202 9 C -0.037 4.037 10 N -0.841 5.841 11 S 2.799 3.201 12 O -0.953 6.953 13 O -0.966 6.966 14 N -0.818 5.818 15 C 0.078 3.922 16 C -0.287 4.287 17 C -0.088 4.088 18 C -0.228 4.228 19 C 0.099 3.901 20 C -0.477 4.477 21 H 0.111 0.889 22 C -0.134 4.134 23 N -0.433 5.433 24 Si 0.734 3.266 25 H -0.195 1.195 26 H -0.218 1.218 27 H -0.168 1.168 28 C -0.268 4.268 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.115 0.885 32 H 0.076 0.924 33 H 0.123 0.877 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.100 0.900 38 H 0.125 0.875 39 H 0.251 0.749 40 H 0.145 0.855 41 H 0.119 0.881 42 H 0.121 0.879 43 H 0.096 0.904 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 0.230 -13.114 -8.494 15.627 hybrid contribution -0.745 0.495 -0.520 1.034 sum -0.515 -12.620 -9.014 15.517 Atomic orbital electron populations 1.22542 0.92506 1.05441 1.03349 1.21722 0.94990 0.96983 0.85414 0.89935 1.22948 0.81690 1.00038 0.97157 1.87941 1.21638 1.72153 1.47645 1.22534 0.96262 0.93445 0.85974 0.91992 1.21745 0.92440 1.03277 1.02770 1.22341 0.79961 1.02185 0.99183 1.58143 1.19274 1.73800 1.32875 1.01955 0.72702 0.73086 0.72373 1.93547 1.72380 1.66121 1.63287 1.93642 1.46687 1.80667 1.75630 1.53495 1.16187 1.47103 1.65008 1.17131 0.89295 0.91183 0.94629 1.21019 1.01673 1.00030 1.05928 1.20543 0.96597 0.94194 0.97489 1.21157 1.01157 0.93281 1.07196 1.17584 0.89087 0.93319 0.90075 1.19468 1.36984 0.90379 1.00883 0.88924 1.26125 0.90946 0.95088 1.01286 1.69678 1.32582 1.11219 1.29857 0.86421 0.80228 0.80477 0.79520 1.19483 1.21793 1.16805 1.21090 1.03009 0.92393 1.10348 0.92074 0.90481 0.88484 0.92394 0.87734 0.91258 0.90563 0.91555 0.89991 0.87473 0.74861 0.85511 0.88054 0.87876 0.90438 0.87528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.32 7.63 37.16 0.28 -2.03 16 2 C 0.12 1.59 3.70 -67.42 -0.25 1.34 16 3 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 4 C 0.06 0.70 6.29 37.31 0.23 0.94 16 5 O -0.38 -4.96 10.38 -35.23 -0.37 -5.32 16 6 C 0.08 0.93 3.41 -26.36 -0.09 0.84 16 7 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 8 C -0.14 -1.41 9.57 37.15 0.36 -1.06 16 9 C 0.09 1.26 6.04 -3.31 -0.02 1.24 16 10 N -1.00 -15.26 3.39 -105.79 -0.36 -15.62 16 11 S 2.79 46.40 5.35 -107.50 -0.57 45.83 16 12 O -0.97 -17.88 13.57 -57.17 -0.78 -18.65 16 13 O -0.98 -16.53 13.84 -57.17 -0.79 -17.32 16 14 N -1.07 -18.63 5.23 32.38 0.17 -18.46 16 15 C 0.17 3.53 6.25 -83.86 -0.52 3.01 16 16 C -0.26 -5.41 9.22 -39.09 -0.36 -5.77 16 17 C -0.07 -1.39 10.01 -39.70 -0.40 -1.79 16 18 C -0.21 -4.58 9.79 -38.84 -0.38 -4.96 16 19 C 0.10 2.49 5.06 -106.85 -0.54 1.95 16 20 C -0.45 -11.67 9.57 -37.74 -0.36 -12.03 16 21 H 0.09 2.53 8.06 -52.48 -0.42 2.10 16 22 C 0.08 2.14 5.42 -17.35 -0.09 2.05 16 23 N -0.81 -21.04 13.93 55.55 0.77 -20.27 16 24 Si 0.91 20.05 24.59 -169.99 -4.18 15.87 16 25 H -0.27 -5.66 6.47 56.52 0.37 -5.30 16 26 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.24 -5.48 7.06 56.52 0.40 -5.09 16 28 C -0.25 -5.58 7.18 -38.68 -0.28 -5.86 16 29 H 0.06 0.85 5.96 -51.93 -0.31 0.54 16 30 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.10 1.26 6.56 -51.93 -0.34 0.92 16 32 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 33 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.11 1.48 6.75 -51.93 -0.35 1.13 16 39 H 0.42 6.34 8.86 -34.47 -0.31 6.03 16 40 H 0.13 2.54 5.67 -52.49 -0.30 2.25 16 41 H 0.10 1.74 8.06 -52.48 -0.42 1.32 16 42 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 43 H 0.29 6.74 8.30 -40.82 -0.34 6.40 16 44 H 0.11 2.43 4.73 -52.49 -0.25 2.18 16 LS Contribution 354.30 15.07 5.34 5.34 Total: -1.00 -29.43 354.30 -9.28 -38.71 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -6.10 Total: 12.03 kcal Atomic # 6 Polarization: -19.71 SS G_CDS: -2.42 Total: -22.13 kcal Atomic # 7 Polarization: -54.93 SS G_CDS: 0.58 Total: -54.35 kcal Atomic # 8 Polarization: -39.36 SS G_CDS: -1.93 Total: -41.29 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -4.18 Total: 15.87 kcal Atomic # 16 Polarization: 46.40 SS G_CDS: -0.57 Total: 45.83 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.43 -9.28 -38.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451109901.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.454 kcal (2) G-P(sol) polarization free energy of solvation -29.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds