Wall clock time and date at job start Wed Apr 1 2020 00:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.51029 * 2 1 4 4 C 1.52880 * 109.62514 * 240.01451 * 2 1 3 5 5 N 1.47154 * 108.60900 * 187.89946 * 4 2 1 6 6 S 1.65594 * 120.97921 * 230.49667 * 5 4 2 7 7 O 1.42102 * 106.40032 * 161.93027 * 6 5 4 8 8 O 1.42107 * 106.40540 * 29.01563 * 6 5 4 9 9 N 1.65597 * 107.22076 * 275.47075 * 6 5 4 10 10 C 1.39680 * 120.00146 * 298.54218 * 9 6 5 11 11 C 1.39335 * 119.94876 * 313.51068 * 10 9 6 12 12 C 1.38482 * 120.42184 * 180.02562 * 11 10 9 13 13 C 1.37690 * 120.32437 * 359.69447 * 12 11 10 14 14 C 1.40746 * 119.89360 * 0.53435 * 13 12 11 15 15 C 1.41410 * 120.21047 * 179.76537 * 14 13 12 16 16 H 1.08006 * 119.99806 * 154.51570 * 15 14 13 17 17 C 1.39931 * 119.99786 * 334.51595 * 15 14 13 18 18 N 1.30828 * 119.99791 * 331.28411 * 17 15 14 19 19 Si 1.86798 * 119.99936 * 151.28445 * 17 15 14 20 20 H 1.48498 * 109.47186 * 179.97438 * 19 17 15 21 21 H 1.48500 * 109.47281 * 59.99772 * 19 17 15 22 22 H 1.48503 * 109.47098 * 300.00082 * 19 17 15 23 23 C 1.38279 * 119.94975 * 133.48884 * 10 9 6 24 24 C 1.47150 * 118.03381 * 50.22288 * 5 4 2 25 25 H 1.09000 * 109.67973 * 189.99472 * 24 5 4 26 26 C 1.52996 * 109.68499 * 69.44123 * 24 5 4 27 27 C 1.53301 * 108.38617 * 309.71531 * 24 5 4 28 28 O 1.42957 * 109.51241 * 120.10605 * 2 1 3 29 29 H 1.09000 * 109.47350 * 299.89558 * 1 2 3 30 30 H 1.09006 * 109.47257 * 59.89478 * 1 2 3 31 31 H 1.09002 * 109.47271 * 179.89090 * 1 2 3 32 32 H 1.09000 * 109.62249 * 68.07531 * 4 2 1 33 33 H 1.09005 * 109.52095 * 307.66091 * 4 2 1 34 34 H 0.97006 * 119.99635 * 118.53685 * 9 6 5 35 35 H 1.08001 * 119.78916 * 359.97438 * 11 10 9 36 36 H 1.07996 * 119.84101 * 179.97438 * 12 11 10 37 37 H 1.07998 * 120.05765 * 180.30961 * 13 12 11 38 38 H 0.97000 * 120.00098 * 353.89604 * 18 17 15 39 39 H 1.08001 * 120.16729 * 359.97324 * 23 10 9 40 40 H 1.09003 * 109.46820 * 59.99757 * 26 24 5 41 41 H 1.08999 * 109.46969 * 179.97438 * 26 24 5 42 42 H 1.08995 * 109.47313 * 300.00131 * 26 24 5 43 43 H 1.08996 * 109.51256 * 172.22991 * 27 24 5 44 44 H 1.09000 * 109.51095 * 292.32995 * 27 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0435 -0.7197 -1.2473 5 7 3.5023 -0.8749 -1.1327 6 16 4.5077 -0.4162 -2.3660 7 8 5.8056 -0.2926 -1.8006 8 8 3.8514 0.6457 -3.0450 9 7 4.5813 -1.6795 -3.4341 10 6 5.0838 -2.9154 -3.0205 11 6 6.2694 -2.9755 -2.2910 12 6 6.7766 -4.1955 -1.8765 13 6 6.1109 -5.3631 -2.1757 14 6 4.9147 -5.3185 -2.9160 15 6 4.2280 -6.5138 -3.2313 16 1 3.1638 -6.4931 -3.4142 17 6 4.9275 -7.7235 -3.3061 18 7 6.1910 -7.7286 -3.6454 19 14 4.0571 -9.3309 -2.9216 20 1 5.0109 -10.4589 -3.0732 21 1 2.9204 -9.5151 -3.8594 22 1 3.5476 -9.2967 -1.5271 23 6 4.4036 -4.0775 -3.3352 24 6 4.0416 -1.4440 0.1125 25 1 5.1260 -1.3350 0.1264 26 6 3.6707 -2.9254 0.2051 27 6 3.4312 -0.6839 1.2957 28 8 2.0075 -0.6759 1.1657 29 1 -0.3634 0.5122 0.8909 30 1 -0.3634 0.5155 -0.8891 31 1 -0.3634 -1.0277 -0.0020 32 1 1.8053 -0.1314 -2.1334 33 1 1.5745 -1.7010 -1.3205 34 1 4.2754 -1.5612 -4.3470 35 1 6.7966 -2.0647 -2.0480 36 1 7.6966 -4.2312 -1.3119 37 1 6.5077 -6.3118 -1.8459 38 1 6.6199 -6.9066 -3.9306 39 1 3.4841 -4.0321 -3.8999 40 1 4.0903 -3.4590 -0.6477 41 1 4.0721 -3.3434 1.1283 42 1 2.5857 -3.0293 0.2005 43 1 3.7090 -1.1768 2.2273 44 1 3.8029 0.3407 1.3009 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451109906.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:34 Heat of formation + Delta-G solvation = -108.434252 kcal Electronic energy + Delta-G solvation = -29260.418305 eV Core-core repulsion = 25303.840667 eV Total energy + Delta-G solvation = -3956.577639 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.68429 -38.26618 -37.11450 -35.74743 -35.16041 -35.01529 -33.40978 -33.02952 -29.93091 -29.84630 -27.78691 -26.26103 -26.00535 -25.17456 -22.59182 -21.24711 -21.18804 -20.51828 -19.03642 -18.34585 -17.68258 -17.42404 -16.76066 -16.14345 -15.56790 -15.45332 -14.95787 -14.91000 -14.57482 -14.27067 -13.98984 -13.79154 -13.25598 -13.07711 -12.78328 -12.53429 -12.44611 -12.42597 -12.25230 -12.18608 -12.02477 -11.90365 -11.82505 -11.76744 -11.26756 -11.23926 -11.17090 -10.94849 -10.57794 -10.47093 -10.45898 -10.20040 -10.07999 -9.94600 -9.49047 -8.95836 -8.85080 -7.79330 -7.41089 -7.26750 -4.55049 0.67482 2.61517 2.69812 2.90830 3.10943 3.20228 3.31275 3.61620 3.62534 3.95336 4.37401 4.43226 4.64927 4.70957 4.88577 5.00249 5.07987 5.18383 5.29966 5.31697 5.45850 5.50335 5.57795 5.66969 5.72423 5.80098 5.87888 5.96326 6.06222 6.16339 6.35234 6.43596 6.52567 6.67178 6.68193 6.74151 6.89041 7.06651 7.08825 7.41106 7.59146 7.69367 7.70642 7.81674 8.09352 8.20811 8.63697 8.77789 9.94830 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014170 B = 0.004043 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.552981 B = 6924.530721 C = 7761.633836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.078 3.922 3 H 0.061 0.939 4 C 0.091 3.909 5 N -0.998 5.998 6 S 2.787 3.213 7 O -0.968 6.968 8 O -0.989 6.989 9 N -1.063 6.063 10 C 0.169 3.831 11 C -0.278 4.278 12 C -0.067 4.067 13 C -0.221 4.221 14 C 0.110 3.890 15 C -0.524 4.524 16 H 0.076 0.924 17 C 0.043 3.957 18 N -0.788 5.788 19 Si 1.061 2.939 20 H -0.274 1.274 21 H -0.276 1.276 22 H -0.274 1.274 23 C -0.233 4.233 24 C 0.114 3.886 25 H 0.111 0.889 26 C -0.162 4.162 27 C 0.059 3.941 28 O -0.372 6.372 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.414 0.586 35 H 0.122 0.878 36 H 0.095 0.905 37 H 0.104 0.896 38 H 0.299 0.701 39 H 0.095 0.905 40 H 0.080 0.920 41 H 0.063 0.937 42 H 0.060 0.940 43 H 0.106 0.894 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.478 10.163 6.353 14.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.018 3.982 3 H 0.079 0.921 4 C -0.035 4.035 5 N -0.838 5.838 6 S 2.797 3.203 7 O -0.951 6.951 8 O -0.973 6.973 9 N -0.816 5.816 10 C 0.076 3.924 11 C -0.301 4.301 12 C -0.086 4.086 13 C -0.241 4.241 14 C 0.106 3.894 15 C -0.552 4.552 16 H 0.094 0.906 17 C -0.180 4.180 18 N -0.410 5.410 19 Si 0.885 3.115 20 H -0.199 1.199 21 H -0.202 1.202 22 H -0.199 1.199 23 C -0.256 4.256 24 C 0.008 3.992 25 H 0.129 0.871 26 C -0.220 4.220 27 C -0.019 4.019 28 O -0.291 6.291 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.113 0.887 33 H 0.097 0.903 34 H 0.249 0.751 35 H 0.139 0.861 36 H 0.113 0.887 37 H 0.123 0.877 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.099 0.901 41 H 0.082 0.918 42 H 0.079 0.921 43 H 0.124 0.876 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.782 9.335 6.675 13.330 hybrid contribution -0.346 1.420 -0.914 1.724 sum -7.127 10.755 5.761 14.130 Atomic orbital electron populations 1.21737 0.92373 1.03336 1.02690 1.22298 0.95286 0.95212 0.85367 0.92077 1.22029 0.79938 1.02032 0.99482 1.58160 1.16695 1.79003 1.29899 1.01914 0.73454 0.72495 0.72394 1.93571 1.37647 1.85711 1.78195 1.93578 1.76679 1.52734 1.74331 1.53420 1.77411 1.26234 1.24530 1.17101 0.93291 0.82943 0.99086 1.20875 0.98135 0.98564 1.12480 1.20476 0.97651 0.92369 0.98072 1.21197 1.00161 0.96945 1.05832 1.17452 0.91154 0.92054 0.88733 1.20517 0.97595 0.92844 1.44220 0.90636 1.26985 0.95083 1.04234 0.91707 1.70460 1.11875 1.34389 1.24325 0.83689 0.75902 0.73970 0.77945 1.19850 1.20152 1.19898 1.20827 1.02594 0.91686 1.10502 1.21741 0.99613 0.94673 0.83155 0.87119 1.22105 1.02390 0.93969 1.03567 1.22942 0.81188 0.99567 0.98238 1.87932 1.20886 1.77452 1.42811 0.91525 0.90812 0.91405 0.88674 0.90286 0.75079 0.86056 0.88660 0.87748 0.88729 0.88639 0.90135 0.91821 0.92123 0.87636 0.92954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 9.57 37.16 0.36 -0.90 16 2 C 0.08 0.88 3.38 -26.79 -0.09 0.78 16 3 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 4 C 0.09 1.14 5.57 -3.75 -0.02 1.12 16 5 N -1.00 -14.48 3.10 -106.26 -0.33 -14.81 16 6 S 2.79 46.25 6.05 -107.50 -0.65 45.60 16 7 O -0.97 -18.23 13.77 -57.17 -0.79 -19.01 16 8 O -0.99 -17.38 16.91 -57.17 -0.97 -18.35 16 9 N -1.06 -18.27 5.81 32.37 0.19 -18.08 16 10 C 0.17 3.45 5.25 -83.86 -0.44 3.01 16 11 C -0.28 -5.89 8.86 -39.08 -0.35 -6.23 16 12 C -0.07 -1.44 10.02 -39.69 -0.40 -1.84 16 13 C -0.22 -5.25 8.07 -38.83 -0.31 -5.56 16 14 C 0.11 2.68 5.27 -106.85 -0.56 2.11 16 15 C -0.52 -13.05 8.95 -37.74 -0.34 -13.39 16 16 H 0.08 1.84 7.99 -52.48 -0.42 1.42 16 17 C 0.04 1.04 4.84 -17.35 -0.08 0.95 16 18 N -0.79 -19.97 12.35 55.55 0.69 -19.28 16 19 Si 1.06 20.56 30.02 -169.99 -5.10 15.46 16 20 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 21 H -0.28 -5.09 7.11 56.52 0.40 -4.69 16 22 H -0.27 -5.14 7.11 56.52 0.40 -4.73 16 23 C -0.23 -5.19 9.35 -38.67 -0.36 -5.55 16 24 C 0.11 1.60 3.32 -67.42 -0.22 1.38 16 25 H 0.11 1.64 6.84 -51.93 -0.35 1.28 16 26 C -0.16 -2.44 9.25 37.16 0.34 -2.09 16 27 C 0.06 0.70 6.36 37.31 0.24 0.93 16 28 O -0.37 -4.67 10.01 -35.23 -0.35 -5.02 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.10 1.11 7.08 -51.93 -0.37 0.74 16 33 H 0.08 0.98 7.68 -51.93 -0.40 0.58 16 34 H 0.41 6.23 8.96 -34.47 -0.31 5.92 16 35 H 0.12 2.56 5.70 -52.49 -0.30 2.26 16 36 H 0.10 1.86 8.06 -52.49 -0.42 1.43 16 37 H 0.10 2.58 6.63 -52.49 -0.35 2.23 16 38 H 0.30 7.79 7.00 -40.82 -0.29 7.51 16 39 H 0.10 2.05 8.06 -52.49 -0.42 1.63 16 40 H 0.08 1.47 6.30 -51.93 -0.33 1.14 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.06 0.90 7.24 -51.93 -0.38 0.52 16 43 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 361.91 15.07 5.45 5.45 Total: -1.00 -28.93 361.91 -10.19 -39.12 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: -6.09 Total: 14.20 kcal Atomic # 6 Polarization: -23.03 SS G_CDS: -2.24 Total: -25.27 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: 0.55 Total: -52.17 kcal Atomic # 8 Polarization: -40.28 SS G_CDS: -2.11 Total: -42.38 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.10 Total: 15.46 kcal Atomic # 16 Polarization: 46.25 SS G_CDS: -0.65 Total: 45.60 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -28.93 -10.19 -39.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451109906.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.318 kcal (2) G-P(sol) polarization free energy of solvation -28.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds