Wall clock time and date at job start Wed Apr 1 2020 00:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.51029 * 2 1 4 4 C 1.52880 * 109.62514 * 240.01451 * 2 1 3 5 5 N 1.47154 * 108.60900 * 187.89946 * 4 2 1 6 6 S 1.65594 * 120.97921 * 230.49667 * 5 4 2 7 7 O 1.42102 * 106.40032 * 161.93027 * 6 5 4 8 8 O 1.42107 * 106.40540 * 29.01563 * 6 5 4 9 9 N 1.65597 * 107.22076 * 275.47075 * 6 5 4 10 10 C 1.39680 * 120.00146 * 298.54218 * 9 6 5 11 11 C 1.39335 * 119.94876 * 313.51068 * 10 9 6 12 12 C 1.38482 * 120.42184 * 180.02562 * 11 10 9 13 13 C 1.37690 * 120.32437 * 359.69447 * 12 11 10 14 14 C 1.40746 * 119.89360 * 0.53435 * 13 12 11 15 15 C 1.41410 * 120.21047 * 179.76537 * 14 13 12 16 16 H 1.08006 * 119.99806 * 154.51570 * 15 14 13 17 17 C 1.39931 * 119.99786 * 334.51595 * 15 14 13 18 18 N 1.30828 * 119.99791 * 331.28411 * 17 15 14 19 19 Si 1.86798 * 119.99936 * 151.28445 * 17 15 14 20 20 H 1.48498 * 109.47186 * 179.97438 * 19 17 15 21 21 H 1.48500 * 109.47281 * 59.99772 * 19 17 15 22 22 H 1.48503 * 109.47098 * 300.00082 * 19 17 15 23 23 C 1.38279 * 119.94975 * 133.48884 * 10 9 6 24 24 C 1.47150 * 118.03381 * 50.22288 * 5 4 2 25 25 H 1.09000 * 109.67973 * 189.99472 * 24 5 4 26 26 C 1.52996 * 109.68499 * 69.44123 * 24 5 4 27 27 C 1.53301 * 108.38617 * 309.71531 * 24 5 4 28 28 O 1.42957 * 109.51241 * 120.10605 * 2 1 3 29 29 H 1.09000 * 109.47350 * 299.89558 * 1 2 3 30 30 H 1.09006 * 109.47257 * 59.89478 * 1 2 3 31 31 H 1.09002 * 109.47271 * 179.89090 * 1 2 3 32 32 H 1.09000 * 109.62249 * 68.07531 * 4 2 1 33 33 H 1.09005 * 109.52095 * 307.66091 * 4 2 1 34 34 H 0.97006 * 119.99635 * 118.53685 * 9 6 5 35 35 H 1.08001 * 119.78916 * 359.97438 * 11 10 9 36 36 H 1.07996 * 119.84101 * 179.97438 * 12 11 10 37 37 H 1.07998 * 120.05765 * 180.30961 * 13 12 11 38 38 H 0.97000 * 120.00098 * 353.89604 * 18 17 15 39 39 H 1.08001 * 120.16729 * 359.97324 * 23 10 9 40 40 H 1.09003 * 109.46820 * 59.99757 * 26 24 5 41 41 H 1.08999 * 109.46969 * 179.97438 * 26 24 5 42 42 H 1.08995 * 109.47313 * 300.00131 * 26 24 5 43 43 H 1.08996 * 109.51256 * 172.22991 * 27 24 5 44 44 H 1.09000 * 109.51095 * 292.32995 * 27 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0435 -0.7197 -1.2473 5 7 3.5023 -0.8749 -1.1327 6 16 4.5077 -0.4162 -2.3660 7 8 5.8056 -0.2926 -1.8006 8 8 3.8514 0.6457 -3.0450 9 7 4.5813 -1.6795 -3.4341 10 6 5.0838 -2.9154 -3.0205 11 6 6.2694 -2.9755 -2.2910 12 6 6.7766 -4.1955 -1.8765 13 6 6.1109 -5.3631 -2.1757 14 6 4.9147 -5.3185 -2.9160 15 6 4.2280 -6.5138 -3.2313 16 1 3.1638 -6.4931 -3.4142 17 6 4.9275 -7.7235 -3.3061 18 7 6.1910 -7.7286 -3.6454 19 14 4.0571 -9.3309 -2.9216 20 1 5.0109 -10.4589 -3.0732 21 1 2.9204 -9.5151 -3.8594 22 1 3.5476 -9.2967 -1.5271 23 6 4.4036 -4.0775 -3.3352 24 6 4.0416 -1.4440 0.1125 25 1 5.1260 -1.3350 0.1264 26 6 3.6707 -2.9254 0.2051 27 6 3.4312 -0.6839 1.2957 28 8 2.0075 -0.6759 1.1657 29 1 -0.3634 0.5122 0.8909 30 1 -0.3634 0.5155 -0.8891 31 1 -0.3634 -1.0277 -0.0020 32 1 1.8053 -0.1314 -2.1334 33 1 1.5745 -1.7010 -1.3205 34 1 4.2754 -1.5612 -4.3470 35 1 6.7966 -2.0647 -2.0480 36 1 7.6966 -4.2312 -1.3119 37 1 6.5077 -6.3118 -1.8459 38 1 6.6199 -6.9066 -3.9306 39 1 3.4841 -4.0321 -3.8999 40 1 4.0903 -3.4590 -0.6477 41 1 4.0721 -3.3434 1.1283 42 1 2.5857 -3.0293 0.2005 43 1 3.7090 -1.1768 2.2273 44 1 3.8029 0.3407 1.3009 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451109906.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:33 Heat of formation + Delta-G solvation = -127.087639 kcal Electronic energy + Delta-G solvation = -29261.227177 eV Core-core repulsion = 25303.840667 eV Total energy + Delta-G solvation = -3957.386510 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.68161 -39.97972 -38.55202 -37.17120 -36.72760 -36.21041 -34.75229 -34.33639 -31.66589 -30.94694 -29.49664 -27.28169 -27.03877 -26.96862 -23.56617 -23.00857 -22.88817 -21.64054 -20.47236 -19.81961 -19.05042 -18.84318 -17.92085 -17.53760 -16.84329 -16.67268 -16.49617 -16.05326 -15.87749 -15.73019 -15.57499 -14.99696 -14.75940 -14.51077 -14.29879 -13.96458 -13.91404 -13.60224 -13.52466 -13.38921 -13.21401 -13.10898 -13.07004 -12.87735 -12.77489 -12.66836 -12.37232 -12.24218 -12.01826 -11.97928 -11.93827 -11.65990 -11.38038 -11.23136 -11.17068 -10.74006 -9.93226 -9.62422 -9.21800 -9.06129 -6.45664 -0.67948 0.85643 0.91773 1.53266 1.60050 1.64491 1.81473 2.26786 2.34386 2.64087 2.75855 3.12345 3.48336 3.57734 3.71245 3.97690 4.02773 4.06848 4.19152 4.24827 4.30099 4.42539 4.54944 4.57808 4.66124 4.71836 4.75220 4.83422 4.85662 4.89493 4.98808 5.02528 5.14404 5.19718 5.30601 5.34456 5.40431 5.44209 5.64911 5.77817 5.81718 5.94648 6.08666 6.18467 6.26379 6.40897 6.79006 6.94260 8.04186 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014170 B = 0.004043 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.552981 B = 6924.530721 C = 7761.633836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.075 3.925 3 H 0.066 0.934 4 C 0.084 3.916 5 N -0.995 5.995 6 S 2.800 3.200 7 O -0.989 6.989 8 O -0.995 6.995 9 N -1.062 6.062 10 C 0.187 3.813 11 C -0.275 4.275 12 C -0.065 4.065 13 C -0.236 4.236 14 C 0.091 3.909 15 C -0.556 4.556 16 H 0.072 0.928 17 C 0.011 3.989 18 N -0.810 5.810 19 Si 1.110 2.890 20 H -0.273 1.273 21 H -0.259 1.259 22 H -0.264 1.264 23 C -0.240 4.240 24 C 0.111 3.889 25 H 0.103 0.897 26 C -0.155 4.155 27 C 0.061 3.939 28 O -0.381 6.381 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.064 0.936 32 H 0.104 0.896 33 H 0.078 0.922 34 H 0.425 0.575 35 H 0.128 0.872 36 H 0.117 0.883 37 H 0.088 0.912 38 H 0.284 0.716 39 H 0.100 0.900 40 H 0.046 0.954 41 H 0.076 0.924 42 H 0.060 0.940 43 H 0.126 0.874 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.730 11.197 7.313 15.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.016 3.984 3 H 0.084 0.916 4 C -0.041 4.041 5 N -0.837 5.837 6 S 2.811 3.189 7 O -0.973 6.973 8 O -0.979 6.979 9 N -0.814 5.814 10 C 0.092 3.908 11 C -0.297 4.297 12 C -0.083 4.083 13 C -0.256 4.256 14 C 0.088 3.912 15 C -0.584 4.584 16 H 0.090 0.910 17 C -0.207 4.207 18 N -0.433 5.433 19 Si 0.928 3.072 20 H -0.198 1.198 21 H -0.184 1.184 22 H -0.188 1.188 23 C -0.263 4.263 24 C 0.005 3.995 25 H 0.121 0.879 26 C -0.213 4.213 27 C -0.017 4.017 28 O -0.300 6.300 29 H 0.093 0.907 30 H 0.109 0.891 31 H 0.083 0.917 32 H 0.122 0.878 33 H 0.096 0.904 34 H 0.261 0.739 35 H 0.146 0.854 36 H 0.135 0.865 37 H 0.106 0.894 38 H 0.096 0.904 39 H 0.118 0.882 40 H 0.065 0.935 41 H 0.095 0.905 42 H 0.079 0.921 43 H 0.144 0.856 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.041 10.401 7.610 15.190 hybrid contribution 0.035 1.292 -1.189 1.756 sum -8.006 11.693 6.421 15.558 Atomic orbital electron populations 1.21754 0.90458 1.03563 1.03964 1.22457 0.96773 0.95004 0.84188 0.91571 1.22275 0.78482 1.02493 1.00843 1.58029 1.17525 1.78794 1.29319 1.01407 0.73066 0.72159 0.72257 1.93536 1.39248 1.85982 1.78487 1.93570 1.76726 1.52845 1.74750 1.53425 1.77320 1.25022 1.25679 1.16980 0.92527 0.83588 0.97698 1.21032 0.98178 0.98506 1.11937 1.20697 0.98154 0.91859 0.97638 1.21109 1.00643 0.96965 1.06913 1.17716 0.91638 0.92862 0.89023 1.20699 0.97599 0.93901 1.46153 0.90983 1.28276 0.94947 1.07143 0.90316 1.70576 1.12797 1.33399 1.26485 0.83084 0.75341 0.70210 0.78568 1.19818 1.18356 1.18840 1.20898 1.02935 0.91749 1.10763 1.21837 0.99451 0.94328 0.83849 0.87902 1.22017 1.02161 0.94479 1.02693 1.23017 0.80859 1.00012 0.97805 1.87937 1.21104 1.77676 1.43246 0.90699 0.89125 0.91701 0.87804 0.90376 0.73874 0.85450 0.86518 0.89368 0.90405 0.88214 0.93507 0.90523 0.92109 0.85587 0.91893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.57 71.98 0.69 -1.39 16 2 C 0.08 1.51 3.38 30.55 0.10 1.61 16 3 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 4 C 0.08 1.95 5.57 86.21 0.48 2.43 16 5 N -1.00 -27.42 3.10 -490.11 -1.52 -28.94 16 6 S 2.80 89.15 6.05 -56.49 -0.34 88.81 16 7 O -0.99 -36.01 13.77 -128.00 -1.76 -37.77 16 8 O -0.99 -33.19 16.91 -128.00 -2.16 -35.36 16 9 N -1.06 -35.43 5.81 -51.49 -0.30 -35.73 16 10 C 0.19 7.53 5.25 38.16 0.20 7.73 16 11 C -0.27 -11.44 8.86 22.59 0.20 -11.24 16 12 C -0.06 -2.79 10.02 22.20 0.22 -2.57 16 13 C -0.24 -11.47 8.07 22.75 0.18 -11.28 16 14 C 0.09 4.54 5.27 -21.31 -0.11 4.43 16 15 C -0.56 -28.35 8.95 23.46 0.21 -28.14 16 16 H 0.07 3.60 7.99 -2.91 -0.02 3.58 16 17 C 0.01 0.53 4.84 85.25 0.41 0.94 16 18 N -0.81 -42.17 12.35 21.82 0.27 -41.90 16 19 Si 1.11 41.44 30.02 68.60 2.06 43.49 16 20 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 21 H -0.26 -8.90 7.11 99.48 0.71 -8.19 16 22 H -0.26 -9.34 7.11 99.48 0.71 -8.63 16 23 C -0.24 -10.79 9.35 22.86 0.21 -10.57 16 24 C 0.11 2.96 3.32 44.97 0.15 3.11 16 25 H 0.10 2.92 6.84 -2.39 -0.02 2.90 16 26 C -0.15 -4.53 9.25 71.98 0.67 -3.87 16 27 C 0.06 1.30 6.36 72.08 0.46 1.76 16 28 O -0.38 -8.64 10.01 -148.98 -1.49 -10.13 16 29 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 31 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.10 2.21 7.08 -2.39 -0.02 2.19 16 33 H 0.08 1.83 7.68 -2.38 -0.02 1.81 16 34 H 0.42 12.27 8.96 -96.74 -0.87 11.41 16 35 H 0.13 5.22 5.70 -2.91 -0.02 5.20 16 36 H 0.12 4.46 8.06 -2.91 -0.02 4.44 16 37 H 0.09 4.52 6.63 -2.91 -0.02 4.50 16 38 H 0.28 15.39 7.00 -92.71 -0.65 14.74 16 39 H 0.10 4.31 8.06 -2.91 -0.02 4.29 16 40 H 0.05 1.69 6.30 -2.39 -0.02 1.68 16 41 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.06 1.75 7.24 -2.39 -0.02 1.73 16 43 H 0.13 2.13 8.14 -2.39 -0.02 2.11 16 44 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -61.90 361.91 -0.89 -62.79 By element: Atomic # 1 Polarization: 41.50 SS G_CDS: 0.28 Total: 41.78 kcal Atomic # 6 Polarization: -51.13 SS G_CDS: 4.08 Total: -47.05 kcal Atomic # 7 Polarization: -105.02 SS G_CDS: -1.55 Total: -106.57 kcal Atomic # 8 Polarization: -77.84 SS G_CDS: -5.42 Total: -83.26 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.06 Total: 43.49 kcal Atomic # 16 Polarization: 89.15 SS G_CDS: -0.34 Total: 88.81 kcal Total: -61.90 -0.89 -62.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451109906.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.296 kcal (2) G-P(sol) polarization free energy of solvation -61.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds