Wall clock time and date at job start Wed Apr 1 2020 00:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35677 * 116.99690 * 2 1 4 4 C 1.38925 * 119.68281 * 180.29596 * 3 2 1 5 5 C 1.38376 * 119.11035 * 180.24961 * 4 3 2 6 6 C 1.50703 * 120.75675 * 179.73310 * 5 4 3 7 7 H 1.08999 * 109.47185 * 339.72085 * 6 5 4 8 8 C 1.53003 * 109.46777 * 99.72200 * 6 5 4 9 9 N 1.46497 * 109.47068 * 219.72078 * 6 5 4 10 10 S 1.65596 * 120.00000 * 145.00058 * 9 6 5 11 11 O 1.42108 * 104.27718 * 181.07106 * 10 9 6 12 12 O 1.42099 * 104.27684 * 308.92748 * 10 9 6 13 13 C 1.81395 * 104.45139 * 65.00099 * 10 9 6 14 14 C 1.52999 * 109.47638 * 172.69262 * 13 10 9 15 15 C 1.50698 * 115.55049 * 65.15567 * 14 13 10 16 16 H 1.08003 * 120.00171 * 264.91004 * 15 14 13 17 17 C 1.37871 * 119.99868 * 84.90543 * 15 14 13 18 18 N 1.31517 * 120.00044 * 352.83889 * 17 15 14 19 19 Si 1.86804 * 120.00204 * 172.83446 * 17 15 14 20 20 H 1.48500 * 109.46753 * 0.02562 * 19 17 15 21 21 H 1.48495 * 109.47038 * 120.00087 * 19 17 15 22 22 H 1.48499 * 109.47092 * 240.00444 * 19 17 15 23 23 C 1.53001 * 117.49609 * 279.49303 * 14 13 10 24 24 C 1.52992 * 117.50020 * 210.83245 * 14 13 10 25 25 C 1.38829 * 118.48599 * 359.45774 * 5 4 3 26 26 C 1.38053 * 119.28759 * 0.27882 * 25 5 4 27 27 N 1.31963 * 120.83413 * 359.97438 * 26 25 5 28 28 H 1.09000 * 109.46913 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47216 * 300.00126 * 1 2 3 30 30 H 1.09003 * 109.46976 * 60.00432 * 1 2 3 31 31 H 1.07998 * 120.44605 * 359.97438 * 4 3 2 32 32 H 1.09000 * 109.47503 * 299.99822 * 8 6 5 33 33 H 1.08999 * 109.47357 * 59.99990 * 8 6 5 34 34 H 1.09003 * 109.46732 * 179.97438 * 8 6 5 35 35 H 0.97000 * 119.99908 * 324.99911 * 9 6 5 36 36 H 1.09002 * 109.47208 * 292.69437 * 13 10 9 37 37 H 1.09000 * 109.47329 * 52.69087 * 13 10 9 38 38 H 0.97002 * 119.99808 * 185.03223 * 18 17 15 39 39 H 1.09008 * 117.50113 * 359.97438 * 23 14 13 40 40 H 1.08996 * 117.50038 * 145.01718 * 23 14 13 41 41 H 1.09005 * 117.50016 * 214.97617 * 24 14 13 42 42 H 1.08995 * 117.50173 * 359.97305 * 24 14 13 43 43 H 1.07994 * 120.35481 * 180.25072 * 25 5 4 44 44 H 1.08000 * 119.58012 * 179.97438 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4326 1.2740 -0.0062 5 6 4.0484 2.5132 -0.0009 6 6 5.5512 2.6270 -0.0013 7 1 5.9865 1.6916 0.3503 8 6 6.0403 2.9150 -1.4222 9 7 5.9584 3.7191 0.8861 10 16 7.3557 3.5938 1.7660 11 8 7.4095 4.8019 2.5123 12 8 7.2484 2.3350 2.4165 13 6 8.6734 3.5562 0.5200 14 6 10.0347 3.6244 1.2149 15 6 10.3804 2.4432 2.0847 16 1 10.1828 2.4778 3.1459 17 6 10.9488 1.3184 1.5256 18 7 11.0602 1.2181 0.2190 19 14 11.5607 -0.0632 2.6239 20 1 11.3206 0.2916 4.0458 21 1 10.8322 -1.3151 2.2968 22 1 13.0152 -0.2644 2.4023 23 6 10.5311 5.0006 1.6627 24 6 11.1789 4.3062 0.4621 25 6 3.2504 3.6492 -0.0010 26 6 1.8769 3.5097 -0.0005 27 7 1.3185 2.3140 -0.0005 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 4.0229 0.3696 -0.0107 32 1 5.7373 2.1024 -2.0825 33 1 5.6050 3.8504 -1.7737 34 1 7.1272 2.9978 -1.4224 35 1 5.4096 4.5157 0.9583 36 1 8.6044 2.6321 -0.0541 37 1 8.5644 4.4090 -0.1500 38 1 11.3924 0.3977 -0.1779 39 1 9.8880 5.8575 1.4618 40 1 11.1080 5.0516 2.5861 41 1 12.1818 3.9007 0.5962 42 1 10.9620 4.7058 -0.5284 43 1 3.6992 4.6315 -0.0010 44 1 1.2516 4.3902 -0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451564160.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:57 Heat of formation + Delta-G solvation = -49.984557 kcal Electronic energy + Delta-G solvation = -27892.583387 eV Core-core repulsion = 23938.540318 eV Total energy + Delta-G solvation = -3954.043070 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.85830 -38.43257 -36.79139 -36.56291 -36.13239 -35.11846 -32.18732 -32.06410 -30.79177 -29.51473 -28.17844 -27.43116 -25.50435 -24.21048 -23.65646 -21.31710 -21.22451 -19.79435 -18.81973 -18.31502 -17.33240 -17.03491 -16.43518 -16.17755 -15.99713 -15.57042 -15.19170 -14.76016 -14.70192 -14.49750 -14.16367 -13.92592 -13.82596 -13.53805 -13.20869 -13.13549 -12.44893 -12.33019 -11.98647 -11.91517 -11.81487 -11.46577 -11.39092 -11.32836 -11.23258 -11.15494 -11.01363 -10.95570 -10.59286 -10.48303 -10.17293 -9.93074 -9.85206 -9.70014 -9.34777 -8.98354 -8.68423 -8.59283 -8.12870 -6.16756 -4.27384 0.89927 1.03146 1.12996 2.88765 3.27346 3.34982 3.36020 3.42871 3.61514 4.11221 4.35661 4.36279 4.47993 4.78357 4.90269 4.94277 4.97543 5.05951 5.09433 5.11358 5.16410 5.18242 5.24330 5.31424 5.40865 5.54730 5.62483 5.71999 5.76972 5.90819 5.93667 6.08974 6.21989 6.23750 6.31719 6.35601 6.57995 6.70133 6.95877 7.05223 7.14128 7.22527 7.37239 7.66210 7.78143 8.17658 8.78730 9.44311 10.90790 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015266 B = 0.003305 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.698347 B = 8469.650011 C = 9410.701125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.308 6.308 3 C 0.321 3.679 4 C -0.180 4.180 5 C 0.001 3.999 6 C 0.185 3.815 7 H 0.110 0.890 8 C -0.174 4.174 9 N -1.127 6.127 10 S 2.604 3.396 11 O -0.971 6.971 12 O -0.949 6.949 13 C -0.553 4.553 14 C 0.043 3.957 15 C -0.517 4.517 16 H 0.069 0.931 17 C 0.083 3.917 18 N -0.874 5.874 19 Si 0.891 3.109 20 H -0.268 1.268 21 H -0.280 1.280 22 H -0.282 1.282 23 C -0.208 4.208 24 C -0.140 4.140 25 C -0.202 4.202 26 C 0.139 3.861 27 N -0.544 5.544 28 H 0.095 0.905 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.147 0.853 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.409 0.591 36 H 0.135 0.865 37 H 0.101 0.899 38 H 0.263 0.737 39 H 0.075 0.925 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.066 0.934 43 H 0.138 0.862 44 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.910 3.060 -6.160 18.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.214 6.214 3 C 0.142 3.858 4 C -0.201 4.201 5 C -0.009 4.009 6 C 0.077 3.923 7 H 0.128 0.872 8 C -0.233 4.233 9 N -0.882 5.882 10 S 2.701 3.299 11 O -0.962 6.962 12 O -0.938 6.938 13 C -0.687 4.687 14 C 0.040 3.960 15 C -0.554 4.554 16 H 0.087 0.913 17 C -0.123 4.123 18 N -0.509 5.509 19 Si 0.718 3.282 20 H -0.192 1.192 21 H -0.206 1.206 22 H -0.208 1.208 23 C -0.245 4.245 24 C -0.179 4.179 25 C -0.222 4.222 26 C -0.016 4.016 27 N -0.268 5.268 28 H 0.113 0.887 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.164 0.836 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.243 0.757 36 H 0.153 0.847 37 H 0.119 0.881 38 H 0.072 0.928 39 H 0.093 0.907 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.085 0.915 43 H 0.156 0.844 44 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -17.470 2.382 -5.349 18.425 hybrid contribution 0.857 -0.240 -0.309 0.942 sum -16.613 2.142 -5.657 17.680 Atomic orbital electron populations 1.22840 0.77333 1.02865 1.02356 1.86255 1.22819 1.24537 1.87829 1.19761 0.89205 0.84687 0.92141 1.20966 0.92085 0.99243 1.07787 1.20173 0.95837 0.92328 0.92520 1.19685 0.89723 0.91657 0.91252 0.87181 1.22446 1.03140 1.02836 0.94865 1.56182 1.42804 1.27007 1.62240 1.05279 0.74279 0.74275 0.76030 1.93512 1.86250 1.47732 1.68666 1.93543 1.84804 1.43784 1.71696 1.30069 1.14237 1.09436 1.14922 1.18279 0.88132 0.91375 0.98169 1.20575 1.42357 0.98437 0.94001 0.91329 1.24944 0.94159 0.98122 0.95030 1.69981 1.44789 1.26627 1.09527 0.86526 0.78354 0.81810 0.81476 1.19222 1.20586 1.20839 1.23198 1.05583 0.96246 0.99493 1.22548 0.98966 1.03137 0.93280 1.21780 0.94633 0.99548 1.06263 1.22338 0.92621 0.93608 0.93042 1.67288 1.41005 0.98851 1.19696 0.88696 0.92345 0.92386 0.83550 0.90969 0.91605 0.90320 0.75737 0.84660 0.88051 0.92764 0.90692 0.89538 0.89575 0.91525 0.84426 0.82292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.38 101.05 1.05 1.40 16 2 O -0.31 -3.69 10.48 -18.73 -0.20 -3.89 16 3 C 0.32 4.08 7.49 -17.12 -0.13 3.95 16 4 C -0.18 -2.24 9.71 -39.28 -0.38 -2.63 16 5 C 0.00 0.01 4.98 -104.35 -0.52 -0.51 16 6 C 0.18 2.37 3.04 -69.08 -0.21 2.16 16 7 H 0.11 1.55 7.38 -51.93 -0.38 1.17 16 8 C -0.17 -1.89 9.46 37.16 0.35 -1.54 16 9 N -1.13 -15.82 5.32 -5.88 -0.03 -15.86 16 10 S 2.60 50.59 5.16 -107.50 -0.55 50.04 16 11 O -0.97 -20.76 18.08 -57.54 -1.04 -21.80 16 12 O -0.95 -22.04 17.12 -57.54 -0.98 -23.03 16 13 C -0.55 -10.94 4.82 37.16 0.18 -10.76 16 14 C 0.04 1.01 1.33 -155.67 -0.21 0.80 16 15 C -0.52 -13.84 8.23 -34.44 -0.28 -14.13 16 16 H 0.07 1.90 7.82 -52.48 -0.41 1.49 16 17 C 0.08 2.20 5.38 -17.82 -0.10 2.11 16 18 N -0.87 -23.33 12.96 55.43 0.72 -22.61 16 19 Si 0.89 21.11 29.55 -169.99 -5.02 16.09 16 20 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 C -0.21 -4.45 9.96 -26.69 -0.27 -4.72 16 24 C -0.14 -3.10 9.47 -26.70 -0.25 -3.35 16 25 C -0.20 -2.06 9.25 -39.43 -0.36 -2.43 16 26 C 0.14 1.39 11.18 -17.56 -0.20 1.20 16 27 N -0.54 -6.51 9.22 -13.33 -0.12 -6.64 16 28 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 30 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 31 H 0.15 1.69 8.06 -52.49 -0.42 1.26 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.93 6.02 -51.93 -0.31 0.61 16 35 H 0.41 4.73 7.13 -34.47 -0.25 4.49 16 36 H 0.14 2.73 7.26 -51.92 -0.38 2.35 16 37 H 0.10 1.65 8.09 -51.92 -0.42 1.23 16 38 H 0.26 6.68 8.32 -40.82 -0.34 6.35 16 39 H 0.07 1.45 8.14 -51.92 -0.42 1.03 16 40 H 0.09 1.84 8.14 -51.93 -0.42 1.42 16 41 H 0.09 2.02 8.14 -51.93 -0.42 1.60 16 42 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 43 H 0.14 1.10 6.91 -52.49 -0.36 0.73 16 44 H 0.16 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 382.13 15.07 5.76 5.76 Total: -1.00 -33.53 382.13 -9.10 -42.63 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -6.29 Total: 7.74 kcal Atomic # 6 Polarization: -27.11 SS G_CDS: -1.32 Total: -28.44 kcal Atomic # 7 Polarization: -45.66 SS G_CDS: 0.56 Total: -45.10 kcal Atomic # 8 Polarization: -46.49 SS G_CDS: -2.22 Total: -48.71 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 50.59 SS G_CDS: -0.55 Total: 50.04 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.53 -9.10 -42.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451564160.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.355 kcal (2) G-P(sol) polarization free energy of solvation -33.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds