Wall clock time and date at job start Wed Apr 1 2020 00:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35677 * 116.99690 * 2 1 4 4 C 1.38925 * 119.68281 * 180.29596 * 3 2 1 5 5 C 1.38376 * 119.11035 * 180.24961 * 4 3 2 6 6 C 1.50703 * 120.75675 * 179.73310 * 5 4 3 7 7 H 1.08999 * 109.47185 * 339.72085 * 6 5 4 8 8 C 1.53003 * 109.46777 * 99.72200 * 6 5 4 9 9 N 1.46497 * 109.47068 * 219.72078 * 6 5 4 10 10 S 1.65596 * 120.00000 * 145.00058 * 9 6 5 11 11 O 1.42108 * 104.27718 * 181.07106 * 10 9 6 12 12 O 1.42099 * 104.27684 * 308.92748 * 10 9 6 13 13 C 1.81395 * 104.45139 * 65.00099 * 10 9 6 14 14 C 1.52999 * 109.47638 * 172.69262 * 13 10 9 15 15 C 1.50698 * 115.55049 * 65.15567 * 14 13 10 16 16 H 1.08003 * 120.00171 * 264.91004 * 15 14 13 17 17 C 1.37871 * 119.99868 * 84.90543 * 15 14 13 18 18 N 1.31517 * 120.00044 * 352.83889 * 17 15 14 19 19 Si 1.86804 * 120.00204 * 172.83446 * 17 15 14 20 20 H 1.48500 * 109.46753 * 0.02562 * 19 17 15 21 21 H 1.48495 * 109.47038 * 120.00087 * 19 17 15 22 22 H 1.48499 * 109.47092 * 240.00444 * 19 17 15 23 23 C 1.53001 * 117.49609 * 279.49303 * 14 13 10 24 24 C 1.52992 * 117.50020 * 210.83245 * 14 13 10 25 25 C 1.38829 * 118.48599 * 359.45774 * 5 4 3 26 26 C 1.38053 * 119.28759 * 0.27882 * 25 5 4 27 27 N 1.31963 * 120.83413 * 359.97438 * 26 25 5 28 28 H 1.09000 * 109.46913 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47216 * 300.00126 * 1 2 3 30 30 H 1.09003 * 109.46976 * 60.00432 * 1 2 3 31 31 H 1.07998 * 120.44605 * 359.97438 * 4 3 2 32 32 H 1.09000 * 109.47503 * 299.99822 * 8 6 5 33 33 H 1.08999 * 109.47357 * 59.99990 * 8 6 5 34 34 H 1.09003 * 109.46732 * 179.97438 * 8 6 5 35 35 H 0.97000 * 119.99908 * 324.99911 * 9 6 5 36 36 H 1.09002 * 109.47208 * 292.69437 * 13 10 9 37 37 H 1.09000 * 109.47329 * 52.69087 * 13 10 9 38 38 H 0.97002 * 119.99808 * 185.03223 * 18 17 15 39 39 H 1.09008 * 117.50113 * 359.97438 * 23 14 13 40 40 H 1.08996 * 117.50038 * 145.01718 * 23 14 13 41 41 H 1.09005 * 117.50016 * 214.97617 * 24 14 13 42 42 H 1.08995 * 117.50173 * 359.97305 * 24 14 13 43 43 H 1.07994 * 120.35481 * 180.25072 * 25 5 4 44 44 H 1.08000 * 119.58012 * 179.97438 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4326 1.2740 -0.0062 5 6 4.0484 2.5132 -0.0009 6 6 5.5512 2.6270 -0.0013 7 1 5.9865 1.6916 0.3503 8 6 6.0403 2.9150 -1.4222 9 7 5.9584 3.7191 0.8861 10 16 7.3557 3.5938 1.7660 11 8 7.4095 4.8019 2.5123 12 8 7.2484 2.3350 2.4165 13 6 8.6734 3.5562 0.5200 14 6 10.0347 3.6244 1.2149 15 6 10.3804 2.4432 2.0847 16 1 10.1828 2.4778 3.1459 17 6 10.9488 1.3184 1.5256 18 7 11.0602 1.2181 0.2190 19 14 11.5607 -0.0632 2.6239 20 1 11.3206 0.2916 4.0458 21 1 10.8322 -1.3151 2.2968 22 1 13.0152 -0.2644 2.4023 23 6 10.5311 5.0006 1.6627 24 6 11.1789 4.3062 0.4621 25 6 3.2504 3.6492 -0.0010 26 6 1.8769 3.5097 -0.0005 27 7 1.3185 2.3140 -0.0005 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 4.0229 0.3696 -0.0107 32 1 5.7373 2.1024 -2.0825 33 1 5.6050 3.8504 -1.7737 34 1 7.1272 2.9978 -1.4224 35 1 5.4096 4.5157 0.9583 36 1 8.6044 2.6321 -0.0541 37 1 8.5644 4.4090 -0.1500 38 1 11.3924 0.3977 -0.1779 39 1 9.8880 5.8575 1.4618 40 1 11.1080 5.0516 2.5861 41 1 12.1818 3.9007 0.5962 42 1 10.9620 4.7058 -0.5284 43 1 3.6992 4.6315 -0.0010 44 1 1.2516 4.3902 -0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451564160.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:57 Heat of formation + Delta-G solvation = -74.925602 kcal Electronic energy + Delta-G solvation = -27893.664912 eV Core-core repulsion = 23938.540318 eV Total energy + Delta-G solvation = -3955.124595 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.71137 -39.31051 -38.54680 -37.99504 -37.34896 -36.77892 -34.06763 -33.16892 -31.61982 -30.55425 -29.72259 -28.16176 -27.48474 -25.12838 -24.50030 -22.95762 -22.25514 -21.49812 -20.32455 -19.32790 -18.56222 -18.26763 -18.05247 -17.01465 -16.94852 -16.85108 -16.76047 -16.58618 -15.92601 -15.59899 -15.56282 -15.02110 -14.88142 -14.76233 -14.43899 -14.13370 -13.76004 -13.66947 -13.34554 -13.19818 -13.09152 -12.94000 -12.90705 -12.84949 -12.69812 -12.48522 -12.43579 -12.21016 -12.19065 -12.14646 -11.88348 -11.53364 -10.91742 -10.84915 -10.72544 -10.53388 -10.45328 -9.86833 -9.51878 -8.18522 -6.32518 -0.54625 0.14211 0.20458 1.36861 1.41118 1.51390 1.96428 2.14584 2.40379 2.74556 2.94306 3.08920 3.28213 3.41434 3.45739 3.52226 3.89115 3.95196 4.09074 4.10365 4.23916 4.28683 4.41457 4.42882 4.43707 4.45031 4.56100 4.62343 4.73193 4.74951 4.79266 4.87793 4.94601 4.99935 5.01568 5.22954 5.30197 5.35803 5.44979 5.52165 5.62586 5.73546 6.12738 6.23262 6.24732 6.73475 6.82300 7.39864 8.88267 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015266 B = 0.003305 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.698347 B = 8469.650011 C = 9410.701125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.324 6.324 3 C 0.306 3.694 4 C -0.199 4.199 5 C -0.007 4.007 6 C 0.182 3.818 7 H 0.090 0.910 8 C -0.172 4.172 9 N -1.107 6.107 10 S 2.620 3.380 11 O -0.992 6.992 12 O -0.995 6.995 13 C -0.548 4.548 14 C 0.011 3.989 15 C -0.536 4.536 16 H 0.045 0.955 17 C 0.046 3.954 18 N -0.888 5.888 19 Si 0.931 3.069 20 H -0.275 1.275 21 H -0.276 1.276 22 H -0.272 1.272 23 C -0.198 4.198 24 C -0.136 4.136 25 C -0.199 4.199 26 C 0.140 3.860 27 N -0.554 5.554 28 H 0.119 0.881 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.143 0.857 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.069 0.931 35 H 0.424 0.576 36 H 0.129 0.871 37 H 0.140 0.860 38 H 0.265 0.735 39 H 0.101 0.899 40 H 0.079 0.921 41 H 0.064 0.936 42 H 0.091 0.909 43 H 0.165 0.835 44 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.248 4.557 -7.440 20.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.232 6.232 3 C 0.127 3.873 4 C -0.220 4.220 5 C -0.016 4.016 6 C 0.074 3.926 7 H 0.108 0.892 8 C -0.231 4.231 9 N -0.868 5.868 10 S 2.717 3.283 11 O -0.983 6.983 12 O -0.985 6.985 13 C -0.681 4.681 14 C 0.009 3.991 15 C -0.573 4.573 16 H 0.064 0.936 17 C -0.157 4.157 18 N -0.524 5.524 19 Si 0.757 3.243 20 H -0.200 1.200 21 H -0.202 1.202 22 H -0.197 1.197 23 C -0.235 4.235 24 C -0.175 4.175 25 C -0.219 4.219 26 C -0.015 4.015 27 N -0.278 5.278 28 H 0.137 0.863 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.161 0.839 32 H 0.100 0.900 33 H 0.107 0.893 34 H 0.088 0.912 35 H 0.261 0.739 36 H 0.147 0.853 37 H 0.159 0.841 38 H 0.075 0.925 39 H 0.119 0.881 40 H 0.098 0.902 41 H 0.083 0.917 42 H 0.109 0.891 43 H 0.183 0.817 44 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -18.808 3.884 -6.624 20.315 hybrid contribution 1.194 -0.675 0.091 1.374 sum -17.614 3.209 -6.533 19.059 Atomic orbital electron populations 1.23049 0.75738 1.04548 1.02339 1.86229 1.24510 1.24612 1.87837 1.19908 0.89395 0.85212 0.92746 1.21062 0.92433 0.99646 1.08856 1.20130 0.95228 0.92910 0.93376 1.19768 0.90535 0.90299 0.91957 0.89241 1.22443 1.02628 1.04506 0.93492 1.55602 1.41234 1.28042 1.61908 1.04483 0.74951 0.72859 0.75964 1.93472 1.86919 1.48081 1.69808 1.93488 1.85755 1.45897 1.73371 1.29941 1.12235 1.10882 1.15062 1.18397 0.90284 0.91257 0.99200 1.20733 1.42787 1.00225 0.93575 0.93634 1.25445 0.94482 0.99676 0.96099 1.70007 1.45249 1.27122 1.09976 0.85918 0.78502 0.80058 0.79860 1.20010 1.20178 1.19717 1.23250 1.05210 0.96042 0.98990 1.22507 0.97465 1.02870 0.94677 1.22089 0.94729 1.00010 1.05100 1.22979 0.93131 0.93994 0.91430 1.67360 1.41248 0.99302 1.19906 0.86259 0.92562 0.92105 0.83880 0.89951 0.89270 0.91163 0.73877 0.85322 0.84148 0.92525 0.88095 0.90246 0.91732 0.89080 0.81746 0.78771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.61 10.38 113.37 1.18 1.79 16 2 O -0.32 -7.74 10.48 -89.94 -0.94 -8.68 16 3 C 0.31 7.63 7.49 84.80 0.63 8.26 16 4 C -0.20 -4.95 9.71 22.47 0.22 -4.73 16 5 C -0.01 -0.16 4.98 -19.69 -0.10 -0.26 16 6 C 0.18 4.46 3.04 44.25 0.13 4.60 16 7 H 0.09 2.58 7.38 -2.39 -0.02 2.56 16 8 C -0.17 -3.37 9.46 71.98 0.68 -2.69 16 9 N -1.11 -29.17 5.32 -172.52 -0.92 -30.09 16 10 S 2.62 100.18 5.16 -56.49 -0.29 99.89 16 11 O -0.99 -41.32 18.08 -127.65 -2.31 -43.62 16 12 O -1.00 -47.29 17.12 -127.65 -2.19 -49.48 16 13 C -0.55 -20.94 4.82 71.98 0.35 -20.59 16 14 C 0.01 0.50 1.33 -52.93 -0.07 0.43 16 15 C -0.54 -29.19 8.23 25.60 0.21 -28.98 16 16 H 0.05 2.61 7.82 -2.91 -0.02 2.59 16 17 C 0.05 2.49 5.38 84.65 0.46 2.95 16 18 N -0.89 -47.44 12.96 21.45 0.28 -47.16 16 19 Si 0.93 43.65 29.55 68.60 2.03 45.68 16 20 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 21 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 22 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 23 C -0.20 -8.20 9.96 30.62 0.30 -7.89 16 24 C -0.14 -5.85 9.47 30.62 0.29 -5.56 16 25 C -0.20 -3.50 9.25 22.37 0.21 -3.30 16 26 C 0.14 2.40 11.18 84.63 0.95 3.35 16 27 N -0.55 -12.38 9.22 -308.95 -2.85 -15.22 16 28 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.06 0.92 8.10 -2.39 -0.02 0.90 16 30 H 0.06 0.93 8.10 -2.39 -0.02 0.91 16 31 H 0.14 3.47 8.06 -2.91 -0.02 3.45 16 32 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.07 1.51 6.02 -2.39 -0.01 1.50 16 35 H 0.42 8.60 7.13 -96.75 -0.69 7.91 16 36 H 0.13 5.12 7.26 -2.39 -0.02 5.11 16 37 H 0.14 4.14 8.09 -2.39 -0.02 4.12 16 38 H 0.27 13.49 8.32 -92.71 -0.77 12.72 16 39 H 0.10 3.63 8.14 -2.38 -0.02 3.61 16 40 H 0.08 3.35 8.14 -2.39 -0.02 3.33 16 41 H 0.06 3.02 8.14 -2.38 -0.02 3.00 16 42 H 0.09 3.42 8.14 -2.39 -0.02 3.40 16 43 H 0.17 1.92 6.91 -2.91 -0.02 1.90 16 44 H 0.20 1.83 8.06 -2.91 -0.02 1.81 16 Total: -1.00 -72.95 382.13 -1.42 -74.37 By element: Atomic # 1 Polarization: 26.61 SS G_CDS: 0.33 Total: 26.94 kcal Atomic # 6 Polarization: -58.06 SS G_CDS: 5.44 Total: -52.62 kcal Atomic # 7 Polarization: -88.99 SS G_CDS: -3.49 Total: -92.47 kcal Atomic # 8 Polarization: -96.35 SS G_CDS: -5.44 Total: -101.78 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 16 Polarization: 100.18 SS G_CDS: -0.29 Total: 99.89 kcal Total: -72.95 -1.42 -74.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451564160.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.555 kcal (2) G-P(sol) polarization free energy of solvation -72.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds