Wall clock time and date at job start Wed Apr 1 2020 00:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42895 * 114.00064 * 2 1 4 4 C 1.53003 * 109.46907 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47287 * 65.00000 * 4 3 2 6 6 C 1.36936 * 120.00300 * 267.62382 * 5 4 3 7 7 H 1.08003 * 119.99374 * 11.03182 * 6 5 4 8 8 C 1.38812 * 120.00377 * 191.04164 * 6 5 4 9 9 N 1.31615 * 119.99795 * 23.94401 * 8 6 5 10 10 Si 1.86797 * 120.00198 * 203.93965 * 8 6 5 11 11 H 1.48502 * 109.46898 * 60.00037 * 10 8 6 12 12 H 1.48496 * 109.47131 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47226 * 300.00490 * 10 8 6 14 14 C 1.46501 * 120.00189 * 87.61376 * 5 4 3 15 15 C 1.50706 * 109.46863 * 90.00056 * 14 5 4 16 16 O 1.21278 * 119.99636 * 0.02562 * 15 14 5 17 17 N 1.34777 * 119.99880 * 179.97438 * 15 14 5 18 18 C 1.46496 * 120.00018 * 180.02562 * 17 15 14 19 19 H 1.09004 * 109.47302 * 327.97134 * 18 17 15 20 20 C 1.53007 * 109.47126 * 87.96150 * 18 17 15 21 21 C 1.50696 * 109.47572 * 207.96342 * 18 17 15 22 22 C 1.38241 * 120.00324 * 331.68820 * 21 18 17 23 23 C 1.38218 * 120.00691 * 179.97438 * 22 21 18 24 24 C 1.38258 * 120.03120 * 0.02562 * 23 22 21 25 25 C 1.38188 * 120.01392 * 359.97438 * 24 23 22 26 26 C 1.38331 * 120.01004 * 151.66187 * 21 18 17 27 27 Cl 1.73606 * 120.01049 * 0.04559 * 26 21 18 28 28 H 1.09001 * 109.46720 * 300.00065 * 1 2 3 29 29 H 1.08994 * 109.47055 * 59.99956 * 1 2 3 30 30 H 1.08996 * 109.47024 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47355 * 59.99898 * 3 2 1 32 32 H 1.09000 * 109.47196 * 299.99391 * 3 2 1 33 33 H 1.08998 * 109.47256 * 305.00107 * 4 3 2 34 34 H 1.09006 * 109.47260 * 184.99530 * 4 3 2 35 35 H 0.96998 * 120.00403 * 180.02562 * 9 8 6 36 36 H 1.09005 * 109.47227 * 330.00993 * 14 5 4 37 37 H 1.09003 * 109.47569 * 210.00299 * 14 5 4 38 38 H 0.97002 * 120.00359 * 0.02562 * 17 15 14 39 39 H 1.09004 * 109.46227 * 60.00325 * 20 18 17 40 40 H 1.08999 * 109.47267 * 179.97438 * 20 18 17 41 41 H 1.08998 * 109.47227 * 300.00795 * 20 18 17 42 42 H 1.07997 * 119.99665 * 359.97438 * 22 21 18 43 43 H 1.08001 * 119.98240 * 179.97438 * 23 22 21 44 44 H 1.08008 * 119.99457 * 179.69985 * 24 23 22 45 45 H 1.07999 * 120.00888 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9768 0.5638 -1.2509 6 6 4.1447 -0.7935 -1.3201 7 1 3.7860 -1.4234 -0.5194 8 6 4.7760 -1.3596 -2.4190 9 7 5.6095 -0.6415 -3.1414 10 14 4.4428 -3.1408 -2.8726 11 1 2.9964 -3.3160 -3.1601 12 1 5.2344 -3.5016 -4.0760 13 1 4.8328 -4.0209 -1.7419 14 6 4.2382 1.3951 -2.4285 15 6 5.6819 1.8273 -2.4279 16 8 6.4198 1.4751 -1.5321 17 7 6.1532 2.6042 -3.4232 18 6 7.5568 3.0239 -3.4229 19 1 7.9019 3.1374 -2.3951 20 6 8.4055 1.9663 -4.1317 21 6 7.6879 4.3399 -4.1452 22 6 6.7922 4.6723 -5.1443 23 6 6.9120 5.8796 -5.8065 24 6 7.9279 6.7552 -5.4705 25 6 8.8238 6.4241 -4.4719 26 6 8.7041 5.2158 -3.8082 27 17 9.8296 4.7988 -2.5539 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.6887 1.8464 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 3.8508 0.5684 0.8427 34 1 3.9786 2.1764 0.0901 35 1 6.0505 -1.0369 -3.9095 36 1 3.5956 2.2752 -2.4019 37 1 4.0311 0.8211 -3.3318 38 1 5.5631 2.8856 -4.1398 39 1 8.0604 1.8528 -5.1594 40 1 9.4497 2.2787 -4.1319 41 1 8.3106 1.0144 -3.6093 42 1 5.9987 3.9886 -5.4075 43 1 6.2123 6.1387 -6.5873 44 1 8.0239 7.6964 -5.9917 45 1 9.6176 7.1079 -4.2098 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459546917.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:00 Heat of formation + Delta-G solvation = -25.331373 kcal Electronic energy + Delta-G solvation = -27938.696247 eV Core-core repulsion = 23983.678514 eV Total energy + Delta-G solvation = -3955.017734 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.80031 -38.18440 -37.25442 -36.41505 -35.38042 -34.27189 -31.45213 -31.16267 -30.78344 -29.17523 -28.50509 -26.47790 -25.75428 -23.76110 -23.20543 -22.78218 -21.10009 -20.20499 -19.18117 -17.53011 -16.67688 -15.97266 -15.82861 -15.71725 -15.41154 -15.08799 -14.69072 -14.32383 -14.23060 -14.02753 -13.89759 -13.64338 -13.21838 -13.13277 -12.92804 -12.52523 -12.16048 -12.02179 -11.77923 -11.60037 -11.50630 -11.47255 -11.27583 -11.16233 -10.95115 -10.88005 -10.70058 -10.38459 -10.34049 -10.24321 -9.91757 -9.68039 -9.01016 -8.99364 -8.72796 -8.66078 -8.14810 -7.99556 -6.79533 -5.67308 -2.92926 1.07164 1.17411 2.15314 3.50480 3.53253 3.55040 3.58785 4.12984 4.37682 4.48198 4.63695 4.69231 4.74221 4.86848 5.20719 5.28374 5.40381 5.51180 5.54028 5.63991 5.65469 5.70740 5.84394 5.90658 5.93729 6.01633 6.04029 6.06469 6.14672 6.19070 6.23681 6.26791 6.33663 6.44532 6.56140 6.68298 6.76982 6.87728 6.96186 7.17024 7.53385 7.85090 7.98594 8.36937 8.71691 9.29873 9.81889 9.98564 10.38085 11.43012 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013221 B = 0.003262 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.291372 B = 8582.635811 C = 9378.239141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.364 6.364 3 C 0.044 3.956 4 C 0.150 3.850 5 N -0.565 5.565 6 C -0.224 4.224 7 H 0.078 0.922 8 C -0.006 4.006 9 N -0.901 5.901 10 Si 0.901 3.099 11 H -0.288 1.288 12 H -0.295 1.295 13 H -0.287 1.287 14 C 0.165 3.835 15 C 0.533 3.467 16 O -0.526 6.526 17 N -0.746 5.746 18 C 0.184 3.816 19 H 0.097 0.903 20 C -0.148 4.148 21 C -0.067 4.067 22 C -0.104 4.104 23 C -0.112 4.112 24 C -0.119 4.119 25 C -0.110 4.110 26 C -0.032 4.032 27 Cl -0.065 7.065 28 H 0.028 0.972 29 H 0.032 0.968 30 H 0.076 0.924 31 H 0.031 0.969 32 H 0.037 0.963 33 H 0.058 0.942 34 H 0.052 0.948 35 H 0.250 0.750 36 H 0.032 0.968 37 H 0.099 0.901 38 H 0.382 0.618 39 H 0.050 0.950 40 H 0.049 0.951 41 H 0.079 0.921 42 H 0.133 0.867 43 H 0.128 0.872 44 H 0.128 0.872 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.143 15.506 -5.092 16.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.282 6.282 3 C -0.035 4.035 4 C 0.023 3.977 5 N -0.283 5.283 6 C -0.353 4.353 7 H 0.096 0.904 8 C -0.202 4.202 9 N -0.548 5.548 10 Si 0.732 3.268 11 H -0.215 1.215 12 H -0.222 1.222 13 H -0.214 1.214 14 C 0.035 3.965 15 C 0.320 3.680 16 O -0.399 6.399 17 N -0.403 5.403 18 C 0.078 3.922 19 H 0.115 0.885 20 C -0.207 4.207 21 C -0.069 4.069 22 C -0.122 4.122 23 C -0.131 4.131 24 C -0.137 4.137 25 C -0.129 4.129 26 C -0.059 4.059 27 Cl -0.036 7.036 28 H 0.046 0.954 29 H 0.051 0.949 30 H 0.095 0.905 31 H 0.049 0.951 32 H 0.056 0.944 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.050 0.950 37 H 0.117 0.883 38 H 0.216 0.784 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.098 0.902 42 H 0.150 0.850 43 H 0.145 0.855 44 H 0.146 0.854 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.978 14.903 -4.381 15.564 hybrid contribution -0.351 -0.604 -0.765 1.036 sum 0.627 14.299 -5.146 15.210 Atomic orbital electron populations 1.22635 0.83488 1.01750 0.98660 1.88115 1.17356 1.27789 1.94956 1.23432 0.97962 0.84386 0.97747 1.20784 0.89373 0.97133 0.90450 1.43756 1.75274 1.03666 1.05635 1.19209 1.30322 0.81253 1.04498 0.90378 1.24645 0.97744 0.97571 1.00279 1.69845 1.28213 1.36044 1.20662 0.86350 0.77540 0.85447 0.77445 1.21504 1.22175 1.21363 1.20605 0.89430 0.92880 0.93615 1.21999 0.92378 0.73988 0.79661 1.90506 1.59143 1.52483 1.37788 1.46411 1.09143 1.55967 1.28784 1.19579 0.84883 0.88168 0.99547 0.88538 1.22063 0.97978 1.00223 1.00430 1.20169 0.93883 0.96257 0.96565 1.20978 0.98863 0.97085 0.95275 1.21225 0.98188 0.93992 0.99648 1.21057 0.95165 0.99940 0.97532 1.21009 1.00190 0.95181 0.96478 1.20793 0.94471 0.96030 0.94655 1.98380 1.60236 1.93498 1.51457 0.95384 0.94940 0.90507 0.95121 0.94444 0.92310 0.92988 0.93949 0.94978 0.88299 0.78381 0.93110 0.93180 0.90239 0.84965 0.85454 0.85385 0.85139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.59 16 2 O -0.36 -7.20 10.29 -35.23 -0.36 -7.57 16 3 C 0.04 0.80 6.28 37.16 0.23 1.03 16 4 C 0.15 3.17 6.08 -4.04 -0.02 3.14 16 5 N -0.56 -13.95 1.99 -174.60 -0.35 -14.30 16 6 C -0.22 -6.19 9.30 -15.06 -0.14 -6.33 16 7 H 0.08 2.22 7.94 -52.48 -0.42 1.80 16 8 C -0.01 -0.17 4.89 -17.43 -0.09 -0.26 16 9 N -0.90 -25.02 8.84 55.49 0.49 -24.53 16 10 Si 0.90 22.38 29.62 -169.99 -5.03 17.35 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.30 -7.40 7.11 56.52 0.40 -7.00 16 13 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 14 C 0.17 3.73 5.44 -5.19 -0.03 3.71 16 15 C 0.53 12.22 5.81 -10.98 -0.06 12.16 16 16 O -0.53 -14.45 15.62 5.56 0.09 -14.36 16 17 N -0.75 -13.69 4.97 -54.93 -0.27 -13.97 16 18 C 0.18 3.18 2.40 -69.08 -0.17 3.01 16 19 H 0.10 1.91 6.32 -51.93 -0.33 1.58 16 20 C -0.15 -2.61 9.49 37.16 0.35 -2.26 16 21 C -0.07 -0.94 5.04 -104.59 -0.53 -1.47 16 22 C -0.10 -1.22 9.22 -39.59 -0.37 -1.59 16 23 C -0.11 -1.09 10.05 -39.58 -0.40 -1.48 16 24 C -0.12 -1.10 10.04 -39.59 -0.40 -1.49 16 25 C -0.11 -1.17 9.83 -39.55 -0.39 -1.56 16 26 C -0.03 -0.43 6.31 -39.50 -0.25 -0.68 16 27 Cl -0.06 -0.88 27.33 -51.86 -1.42 -2.30 16 28 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 1.30 8.02 -51.93 -0.42 0.89 16 34 H 0.05 1.03 8.09 -51.93 -0.42 0.61 16 35 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 36 H 0.03 0.62 8.07 -51.93 -0.42 0.20 16 37 H 0.10 2.40 6.45 -51.93 -0.34 2.06 16 38 H 0.38 5.91 6.36 -40.82 -0.26 5.65 16 39 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.08 1.71 8.14 -51.93 -0.42 1.28 16 42 H 0.13 1.43 6.22 -52.49 -0.33 1.10 16 43 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 44 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 45 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 386.27 15.07 5.82 5.82 Total: -1.00 -32.97 386.27 -8.88 -41.85 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -6.71 Total: 4.47 kcal Atomic # 6 Polarization: 8.66 SS G_CDS: -1.13 Total: 7.53 kcal Atomic # 7 Polarization: -52.66 SS G_CDS: -0.13 Total: -52.79 kcal Atomic # 8 Polarization: -21.65 SS G_CDS: -0.28 Total: -21.93 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.03 Total: 17.35 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -1.42 Total: -2.30 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.97 -8.88 -41.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459546917.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.518 kcal (2) G-P(sol) polarization free energy of solvation -32.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds