Wall clock time and date at job start Wed Apr 1 2020 00:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.46770 * 2 1 4 4 C 1.50699 * 109.46740 * 119.99543 * 2 1 3 5 5 C 1.38232 * 119.99739 * 61.97473 * 4 2 1 6 6 C 1.38243 * 119.99713 * 179.78345 * 5 4 2 7 7 C 1.38233 * 119.99855 * 0.44092 * 6 5 4 8 8 C 1.38240 * 119.99929 * 359.80924 * 7 6 5 9 9 C 1.38226 * 120.00155 * 359.97438 * 8 7 6 10 10 C 1.53001 * 109.47261 * 239.99926 * 2 1 3 11 11 H 1.09003 * 109.46557 * 304.69461 * 10 2 1 12 12 N 1.46498 * 109.47024 * 184.69605 * 10 2 1 13 13 S 1.65595 * 119.99845 * 144.99744 * 12 10 2 14 14 O 1.42098 * 104.28093 * 308.92921 * 13 12 10 15 15 O 1.42106 * 104.27752 * 181.07331 * 13 12 10 16 16 C 1.81395 * 104.45047 * 65.00165 * 13 12 10 17 17 C 1.52998 * 109.47320 * 179.97438 * 16 13 12 18 18 C 1.50699 * 109.47366 * 180.02562 * 17 16 13 19 19 H 1.08008 * 120.00137 * 0.02562 * 18 17 16 20 20 C 1.37878 * 120.00222 * 179.97438 * 18 17 16 21 21 N 1.31517 * 120.00080 * 179.97438 * 20 18 17 22 22 Si 1.86795 * 119.99900 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47551 * 90.00077 * 22 20 18 24 24 H 1.48504 * 109.46882 * 209.99815 * 22 20 18 25 25 H 1.48500 * 109.47313 * 329.99662 * 22 20 18 26 26 C 1.50700 * 109.47218 * 64.69324 * 10 2 1 27 27 N 1.34773 * 120.00398 * 274.29522 * 26 10 2 28 28 O 1.21282 * 119.99664 * 94.29166 * 26 10 2 29 29 H 1.09000 * 109.46905 * 186.04453 * 1 2 3 30 30 H 1.08998 * 109.47713 * 306.05054 * 1 2 3 31 31 H 1.09003 * 109.47233 * 66.05216 * 1 2 3 32 32 H 1.07995 * 120.00680 * 359.97438 * 5 4 2 33 33 H 1.07999 * 120.00197 * 180.26992 * 6 5 4 34 34 H 1.08002 * 119.99946 * 179.83514 * 7 6 5 35 35 H 1.08006 * 119.99568 * 180.02562 * 8 7 6 36 36 H 1.08002 * 120.00118 * 179.97438 * 9 8 7 37 37 H 0.97002 * 119.99996 * 324.99770 * 12 10 2 38 38 H 1.08997 * 109.47128 * 299.99545 * 16 13 12 39 39 H 1.09000 * 109.47542 * 60.00078 * 16 13 12 40 40 H 1.08998 * 109.47480 * 299.99764 * 17 16 13 41 41 H 1.09004 * 109.47316 * 59.99908 * 17 16 13 42 42 H 0.97002 * 119.99934 * 179.97438 * 21 20 18 43 43 H 0.97009 * 119.99534 * 5.33227 * 27 26 10 44 44 H 0.96997 * 120.00437 * 185.33733 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7103 1.2305 5 6 1.7322 -2.0450 1.4289 6 6 2.1967 -2.6978 2.5555 7 6 2.9535 -2.0134 3.4881 8 6 3.2491 -0.6773 3.2922 9 6 2.7884 -0.0258 2.1635 10 6 2.0401 -0.7213 -1.2492 11 1 1.6096 -1.7218 -1.2922 12 7 3.5007 -0.8199 -1.1940 13 16 4.2639 -2.1563 -1.8052 14 8 3.5912 -3.2518 -1.1998 15 8 5.6426 -1.9162 -1.5582 16 6 3.9172 -2.1013 -3.5849 17 6 4.5778 -3.2989 -4.2705 18 6 4.2903 -3.2528 -5.7491 19 1 3.6961 -2.4494 -6.1590 20 6 4.7866 -4.2357 -6.5789 21 7 4.5352 -4.1957 -7.8692 22 14 5.8149 -5.6248 -5.8703 23 1 4.9267 -6.7494 -5.4809 24 1 6.7864 -6.0922 -6.8916 25 1 6.5492 -5.1373 -4.6752 26 6 1.6349 0.0530 -2.4770 27 7 0.4225 -0.1473 -3.0305 28 8 2.3999 0.8566 -2.9669 29 1 -0.3633 -1.0220 0.1082 30 1 -0.3634 0.6047 0.8308 31 1 -0.3634 0.4171 -0.9392 32 1 1.1376 -2.5787 0.7023 33 1 1.9660 -3.7417 2.7084 34 1 3.3141 -2.5227 4.3696 35 1 3.8408 -0.1427 4.0207 36 1 3.0191 1.0182 2.0107 37 1 4.0207 -0.1024 -0.7993 38 1 2.8399 -2.1385 -3.7465 39 1 4.3158 -1.1776 -4.0044 40 1 5.6551 -3.2613 -4.1090 41 1 4.1796 -4.2229 -3.8512 42 1 4.8848 -4.8870 -8.4531 43 1 -0.2185 -0.7314 -2.5958 44 1 0.1910 0.2924 -3.8635 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490080181.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:04:06 Heat of formation + Delta-G solvation = -94.533457 kcal Electronic energy + Delta-G solvation = -28500.728980 eV Core-core repulsion = 24544.754125 eV Total energy + Delta-G solvation = -3955.974855 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.48736 -39.14217 -36.74950 -36.14018 -35.56777 -33.96220 -33.92127 -33.00391 -31.47275 -31.01214 -29.72543 -26.77777 -25.96930 -24.01421 -22.73180 -21.44240 -21.05884 -20.30633 -19.12093 -18.07479 -17.70480 -17.06874 -16.86552 -16.76019 -16.11182 -15.53374 -15.44219 -15.15837 -14.78802 -14.56253 -14.30462 -14.19491 -13.67299 -13.60598 -13.42766 -13.22141 -12.97369 -12.78469 -12.44953 -12.31114 -11.89494 -11.74715 -11.72164 -11.61706 -11.40460 -11.25172 -11.18361 -11.11640 -10.92652 -10.74798 -10.43658 -10.12724 -9.79550 -9.72791 -9.46247 -9.18040 -8.99414 -8.81932 -8.65427 -6.15487 -4.16469 0.63923 1.22128 1.32581 2.38039 2.87372 3.26369 3.33939 3.35529 3.38701 3.68060 4.11693 4.30851 4.32713 4.36508 4.57464 4.64111 4.77760 4.84647 4.87942 4.92204 5.03623 5.06611 5.16038 5.27247 5.38162 5.44646 5.49134 5.51082 5.64754 5.69771 5.81662 5.89805 5.94660 6.29448 6.36135 6.43484 6.47421 6.63697 6.82549 6.89628 6.91346 6.97946 7.13937 7.55640 8.08424 8.38380 8.86287 9.44102 10.96976 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014292 B = 0.003866 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.638302 B = 7241.168444 C = 8389.416587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.046 4.046 3 H 0.093 0.907 4 C -0.075 4.075 5 C -0.100 4.100 6 C -0.114 4.114 7 C -0.124 4.124 8 C -0.122 4.122 9 C -0.116 4.116 10 C 0.140 3.860 11 H 0.115 0.885 12 N -1.098 6.098 13 S 2.586 3.414 14 O -0.960 6.960 15 O -0.961 6.961 16 C -0.582 4.582 17 C -0.005 4.005 18 C -0.517 4.517 19 H 0.078 0.922 20 C 0.072 3.928 21 N -0.896 5.896 22 Si 0.868 3.132 23 H -0.271 1.271 24 H -0.282 1.282 25 H -0.262 1.262 26 C 0.497 3.503 27 N -0.853 5.853 28 O -0.520 6.520 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.124 0.876 33 H 0.122 0.878 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.420 0.580 38 H 0.117 0.883 39 H 0.131 0.869 40 H 0.032 0.968 41 H 0.028 0.972 42 H 0.266 0.734 43 H 0.402 0.598 44 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.688 8.561 20.976 25.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.066 4.066 3 H 0.111 0.889 4 C -0.075 4.075 5 C -0.118 4.118 6 C -0.132 4.132 7 C -0.142 4.142 8 C -0.140 4.140 9 C -0.134 4.134 10 C 0.027 3.973 11 H 0.133 0.867 12 N -0.853 5.853 13 S 2.684 3.316 14 O -0.950 6.950 15 O -0.951 6.951 16 C -0.715 4.715 17 C -0.044 4.044 18 C -0.556 4.556 19 H 0.096 0.904 20 C -0.131 4.131 21 N -0.534 5.534 22 Si 0.695 3.305 23 H -0.197 1.197 24 H -0.207 1.207 25 H -0.186 1.186 26 C 0.279 3.721 27 N -0.419 5.419 28 O -0.394 6.394 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.142 0.858 33 H 0.140 0.860 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.254 0.746 38 H 0.136 0.864 39 H 0.149 0.851 40 H 0.051 0.949 41 H 0.046 0.954 42 H 0.076 0.924 43 H 0.231 0.769 44 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -10.604 8.177 21.094 24.985 hybrid contribution 0.066 -0.248 -0.431 0.502 sum -10.538 7.928 20.663 24.513 Atomic orbital electron populations 1.22045 0.93003 1.03282 1.03126 1.20285 0.96594 0.99629 0.90137 0.88911 1.19542 0.98487 0.94303 0.95151 1.21004 0.99719 0.93757 0.97330 1.21152 0.97836 0.99857 0.94341 1.21166 0.98818 0.94729 0.99460 1.21101 1.00137 0.94974 0.97771 1.21022 0.98118 0.99831 0.94394 1.20801 0.82591 1.00921 0.92957 0.86733 1.55514 1.12426 1.40453 1.76888 1.05763 0.74034 0.73205 0.78635 1.93547 1.75508 1.51335 1.74606 1.93569 1.32012 1.84339 1.85176 1.30327 1.10466 1.10202 1.20529 1.19402 0.96006 0.90327 0.98712 1.20841 1.34445 1.11660 0.88694 0.90434 1.24979 0.95624 0.97738 0.94735 1.69884 1.45394 1.34700 1.03396 0.86937 0.81034 0.82885 0.79679 1.19663 1.20709 1.18618 1.21234 0.81876 0.83202 0.85810 1.44027 1.16659 1.52376 1.28825 1.90776 1.51353 1.34254 1.63006 0.91390 0.91210 0.91428 0.85812 0.85985 0.86289 0.86213 0.86146 0.74588 0.86435 0.85083 0.94943 0.95430 0.92399 0.76876 0.76335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.93 8.70 37.16 0.32 -0.60 16 2 C -0.05 -0.39 2.23 -91.77 -0.21 -0.60 16 3 H 0.09 0.77 7.88 -51.93 -0.41 0.36 16 4 C -0.07 -0.74 4.25 -104.63 -0.44 -1.18 16 5 C -0.10 -1.06 8.68 -39.58 -0.34 -1.41 16 6 C -0.11 -1.20 10.05 -39.58 -0.40 -1.60 16 7 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 8 C -0.12 -1.16 10.05 -39.59 -0.40 -1.55 16 9 C -0.12 -1.11 9.67 -39.59 -0.38 -1.49 16 10 C 0.14 1.52 1.91 -69.08 -0.13 1.39 16 11 H 0.11 1.13 6.79 -51.93 -0.35 0.78 16 12 N -1.10 -14.76 4.42 -5.88 -0.03 -14.79 16 13 S 2.59 45.78 5.44 -107.50 -0.58 45.20 16 14 O -0.96 -17.99 17.39 -57.54 -1.00 -19.00 16 15 O -0.96 -19.96 18.08 -57.54 -1.04 -21.00 16 16 C -0.58 -11.43 5.66 37.16 0.21 -11.22 16 17 C -0.01 -0.13 4.05 -27.88 -0.11 -0.24 16 18 C -0.52 -14.71 9.66 -34.44 -0.33 -15.05 16 19 H 0.08 2.33 7.99 -52.48 -0.42 1.92 16 20 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 21 N -0.90 -27.29 13.96 55.43 0.77 -26.51 16 22 Si 0.87 21.66 27.47 -169.99 -4.67 17.00 16 23 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.26 -6.36 6.54 56.52 0.37 -5.99 16 26 C 0.50 5.83 6.01 -10.99 -0.07 5.77 16 27 N -0.85 -6.83 7.88 31.22 0.25 -6.58 16 28 O -0.52 -8.21 17.47 5.56 0.10 -8.11 16 29 H 0.07 0.34 7.32 -51.93 -0.38 -0.04 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.34 5.76 -51.93 -0.30 0.04 16 32 H 0.12 1.19 7.13 -52.49 -0.37 0.81 16 33 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 34 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 35 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 36 H 0.12 0.93 7.95 -52.49 -0.42 0.52 16 37 H 0.42 5.12 8.80 -34.47 -0.30 4.82 16 38 H 0.12 2.08 7.75 -51.93 -0.40 1.68 16 39 H 0.13 2.56 8.14 -51.92 -0.42 2.14 16 40 H 0.03 0.80 7.20 -51.93 -0.37 0.42 16 41 H 0.03 0.65 7.57 -51.93 -0.39 0.26 16 42 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 43 H 0.40 1.95 7.80 -40.82 -0.32 1.63 16 44 H 0.41 3.05 8.93 -40.82 -0.36 2.69 16 LS Contribution 376.91 15.07 5.68 5.68 Total: -1.00 -37.88 376.91 -9.39 -47.26 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -6.09 Total: 8.25 kcal Atomic # 6 Polarization: -24.63 SS G_CDS: -2.78 Total: -27.40 kcal Atomic # 7 Polarization: -48.88 SS G_CDS: 0.99 Total: -47.89 kcal Atomic # 8 Polarization: -46.16 SS G_CDS: -1.94 Total: -48.10 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 17.00 kcal Atomic # 16 Polarization: 45.78 SS G_CDS: -0.58 Total: 45.20 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -37.88 -9.39 -47.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490080181.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.269 kcal (2) G-P(sol) polarization free energy of solvation -37.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds