Wall clock time and date at job start Wed Apr 1 2020 00:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.46770 * 2 1 4 4 C 1.50699 * 109.46740 * 119.99543 * 2 1 3 5 5 C 1.38232 * 119.99739 * 61.97473 * 4 2 1 6 6 C 1.38243 * 119.99713 * 179.78345 * 5 4 2 7 7 C 1.38233 * 119.99855 * 0.44092 * 6 5 4 8 8 C 1.38240 * 119.99929 * 359.80924 * 7 6 5 9 9 C 1.38226 * 120.00155 * 359.97438 * 8 7 6 10 10 C 1.53001 * 109.47261 * 239.99926 * 2 1 3 11 11 H 1.09003 * 109.46557 * 304.69461 * 10 2 1 12 12 N 1.46498 * 109.47024 * 184.69605 * 10 2 1 13 13 S 1.65595 * 119.99845 * 144.99744 * 12 10 2 14 14 O 1.42098 * 104.28093 * 308.92921 * 13 12 10 15 15 O 1.42106 * 104.27752 * 181.07331 * 13 12 10 16 16 C 1.81395 * 104.45047 * 65.00165 * 13 12 10 17 17 C 1.52998 * 109.47320 * 179.97438 * 16 13 12 18 18 C 1.50699 * 109.47366 * 180.02562 * 17 16 13 19 19 H 1.08008 * 120.00137 * 0.02562 * 18 17 16 20 20 C 1.37878 * 120.00222 * 179.97438 * 18 17 16 21 21 N 1.31517 * 120.00080 * 179.97438 * 20 18 17 22 22 Si 1.86795 * 119.99900 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47551 * 90.00077 * 22 20 18 24 24 H 1.48504 * 109.46882 * 209.99815 * 22 20 18 25 25 H 1.48500 * 109.47313 * 329.99662 * 22 20 18 26 26 C 1.50700 * 109.47218 * 64.69324 * 10 2 1 27 27 N 1.34773 * 120.00398 * 274.29522 * 26 10 2 28 28 O 1.21282 * 119.99664 * 94.29166 * 26 10 2 29 29 H 1.09000 * 109.46905 * 186.04453 * 1 2 3 30 30 H 1.08998 * 109.47713 * 306.05054 * 1 2 3 31 31 H 1.09003 * 109.47233 * 66.05216 * 1 2 3 32 32 H 1.07995 * 120.00680 * 359.97438 * 5 4 2 33 33 H 1.07999 * 120.00197 * 180.26992 * 6 5 4 34 34 H 1.08002 * 119.99946 * 179.83514 * 7 6 5 35 35 H 1.08006 * 119.99568 * 180.02562 * 8 7 6 36 36 H 1.08002 * 120.00118 * 179.97438 * 9 8 7 37 37 H 0.97002 * 119.99996 * 324.99770 * 12 10 2 38 38 H 1.08997 * 109.47128 * 299.99545 * 16 13 12 39 39 H 1.09000 * 109.47542 * 60.00078 * 16 13 12 40 40 H 1.08998 * 109.47480 * 299.99764 * 17 16 13 41 41 H 1.09004 * 109.47316 * 59.99908 * 17 16 13 42 42 H 0.97002 * 119.99934 * 179.97438 * 21 20 18 43 43 H 0.97009 * 119.99534 * 5.33227 * 27 26 10 44 44 H 0.96997 * 120.00437 * 185.33733 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7103 1.2305 5 6 1.7322 -2.0450 1.4289 6 6 2.1967 -2.6978 2.5555 7 6 2.9535 -2.0134 3.4881 8 6 3.2491 -0.6773 3.2922 9 6 2.7884 -0.0258 2.1635 10 6 2.0401 -0.7213 -1.2492 11 1 1.6096 -1.7218 -1.2922 12 7 3.5007 -0.8199 -1.1940 13 16 4.2639 -2.1563 -1.8052 14 8 3.5912 -3.2518 -1.1998 15 8 5.6426 -1.9162 -1.5582 16 6 3.9172 -2.1013 -3.5849 17 6 4.5778 -3.2989 -4.2705 18 6 4.2903 -3.2528 -5.7491 19 1 3.6961 -2.4494 -6.1590 20 6 4.7866 -4.2357 -6.5789 21 7 4.5352 -4.1957 -7.8692 22 14 5.8149 -5.6248 -5.8703 23 1 4.9267 -6.7494 -5.4809 24 1 6.7864 -6.0922 -6.8916 25 1 6.5492 -5.1373 -4.6752 26 6 1.6349 0.0530 -2.4770 27 7 0.4225 -0.1473 -3.0305 28 8 2.3999 0.8566 -2.9669 29 1 -0.3633 -1.0220 0.1082 30 1 -0.3634 0.6047 0.8308 31 1 -0.3634 0.4171 -0.9392 32 1 1.1376 -2.5787 0.7023 33 1 1.9660 -3.7417 2.7084 34 1 3.3141 -2.5227 4.3696 35 1 3.8408 -0.1427 4.0207 36 1 3.0191 1.0182 2.0107 37 1 4.0207 -0.1024 -0.7993 38 1 2.8399 -2.1385 -3.7465 39 1 4.3158 -1.1776 -4.0044 40 1 5.6551 -3.2613 -4.1090 41 1 4.1796 -4.2229 -3.8512 42 1 4.8848 -4.8870 -8.4531 43 1 -0.2185 -0.7314 -2.5958 44 1 0.1910 0.2924 -3.8635 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490080181.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:04:05 Heat of formation + Delta-G solvation = -124.768091 kcal Electronic energy + Delta-G solvation = -28502.040052 eV Core-core repulsion = 24544.754125 eV Total energy + Delta-G solvation = -3957.285927 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.33577 -39.93279 -38.24854 -37.16468 -36.96119 -35.93514 -34.82865 -33.88163 -33.51358 -31.71464 -30.40613 -27.94088 -27.61128 -24.70783 -23.44965 -23.23799 -22.00558 -21.11363 -20.47112 -19.47088 -18.96493 -18.49497 -17.84897 -17.63254 -17.20511 -17.03073 -16.42208 -16.34858 -16.16003 -15.79252 -15.39767 -15.23855 -15.02593 -14.84883 -14.42289 -14.11633 -14.03088 -13.82822 -13.63120 -13.43589 -13.28411 -13.18132 -13.11069 -13.01432 -12.89906 -12.50205 -12.28780 -12.21602 -12.05853 -11.89658 -11.76525 -11.66720 -11.59719 -11.20882 -10.85738 -10.61928 -10.39919 -9.72201 -9.54120 -8.37941 -6.44328 -0.81353 0.49920 0.59793 1.30842 1.33185 1.41105 1.43628 1.69725 2.28524 2.45177 2.70932 2.95141 2.95530 3.12616 3.57225 3.64689 3.79693 3.88154 3.93904 4.07060 4.09751 4.21102 4.25562 4.37080 4.46424 4.49892 4.62320 4.69760 4.79662 4.93364 5.00513 5.04401 5.08355 5.20483 5.25034 5.35688 5.44404 5.65669 5.72090 5.75177 5.88645 5.92398 6.15065 6.20050 6.41489 6.60957 7.19884 7.28870 8.77867 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014292 B = 0.003866 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.638302 B = 7241.168444 C = 8389.416587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.039 4.039 3 H 0.096 0.904 4 C -0.080 4.080 5 C -0.117 4.117 6 C -0.133 4.133 7 C -0.135 4.135 8 C -0.131 4.131 9 C -0.126 4.126 10 C 0.132 3.868 11 H 0.128 0.872 12 N -1.086 6.086 13 S 2.620 3.380 14 O -0.966 6.966 15 O -0.990 6.990 16 C -0.592 4.592 17 C -0.013 4.013 18 C -0.528 4.528 19 H 0.044 0.956 20 C 0.015 3.985 21 N -0.939 5.939 22 Si 0.926 3.074 23 H -0.254 1.254 24 H -0.273 1.273 25 H -0.251 1.251 26 C 0.496 3.504 27 N -0.835 5.835 28 O -0.566 6.566 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.130 0.870 33 H 0.129 0.871 34 H 0.134 0.866 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.427 0.573 38 H 0.132 0.868 39 H 0.125 0.875 40 H 0.029 0.971 41 H 0.039 0.961 42 H 0.271 0.729 43 H 0.419 0.581 44 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.458 8.268 23.035 27.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.059 4.059 3 H 0.115 0.885 4 C -0.081 4.081 5 C -0.135 4.135 6 C -0.151 4.151 7 C -0.153 4.153 8 C -0.149 4.149 9 C -0.144 4.144 10 C 0.021 3.979 11 H 0.146 0.854 12 N -0.845 5.845 13 S 2.715 3.285 14 O -0.955 6.955 15 O -0.981 6.981 16 C -0.722 4.722 17 C -0.052 4.052 18 C -0.567 4.567 19 H 0.062 0.938 20 C -0.184 4.184 21 N -0.579 5.579 22 Si 0.748 3.252 23 H -0.179 1.179 24 H -0.198 1.198 25 H -0.175 1.175 26 C 0.278 3.722 27 N -0.401 5.401 28 O -0.444 6.444 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.148 0.852 33 H 0.147 0.853 34 H 0.152 0.848 35 H 0.156 0.844 36 H 0.154 0.846 37 H 0.264 0.736 38 H 0.151 0.849 39 H 0.144 0.856 40 H 0.047 0.953 41 H 0.057 0.943 42 H 0.080 0.920 43 H 0.252 0.748 44 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -11.426 7.865 23.142 26.981 hybrid contribution 0.192 -0.060 -1.047 1.067 sum -11.234 7.805 22.095 25.987 Atomic orbital electron populations 1.22071 0.90836 1.04357 1.04017 1.20285 0.98262 0.99165 0.88192 0.88537 1.19684 0.98522 0.94219 0.95625 1.21212 1.00286 0.94306 0.97716 1.21410 0.98363 1.00547 0.94782 1.21448 0.98740 0.95156 0.99981 1.21414 1.00138 0.95087 0.98226 1.21315 0.97880 1.00758 0.94420 1.21144 0.80845 1.01989 0.93957 0.85404 1.55132 1.13846 1.39718 1.75762 1.04590 0.73206 0.73619 0.77109 1.93538 1.75573 1.52438 1.73975 1.93526 1.34314 1.85113 1.85118 1.30357 1.11060 1.07914 1.22901 1.19350 0.96338 0.92909 0.96574 1.21118 1.33748 1.10630 0.91211 0.93779 1.25879 0.96935 1.00547 0.95006 1.70013 1.46947 1.36059 1.04882 0.86015 0.79811 0.79944 0.79444 1.17863 1.19843 1.17520 1.21362 0.82337 0.82695 0.85812 1.43911 1.15831 1.51760 1.28613 1.90766 1.52913 1.36373 1.64361 0.90286 0.90361 0.90508 0.85168 0.85262 0.84773 0.84428 0.84590 0.73617 0.84929 0.85634 0.95286 0.94303 0.92039 0.74828 0.75782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 8.70 71.98 0.63 -0.77 16 2 C -0.04 -0.57 2.23 -11.54 -0.03 -0.59 16 3 H 0.10 1.37 7.88 -2.39 -0.02 1.35 16 4 C -0.08 -1.42 4.25 -19.87 -0.08 -1.51 16 5 C -0.12 -2.28 8.68 22.27 0.19 -2.09 16 6 C -0.13 -2.63 10.05 22.27 0.22 -2.41 16 7 C -0.14 -2.46 10.05 22.27 0.22 -2.24 16 8 C -0.13 -2.25 10.05 22.27 0.22 -2.02 16 9 C -0.13 -2.16 9.67 22.27 0.22 -1.94 16 10 C 0.13 2.62 1.91 44.25 0.08 2.71 16 11 H 0.13 2.21 6.79 -2.39 -0.02 2.19 16 12 N -1.09 -27.66 4.42 -172.52 -0.76 -28.42 16 13 S 2.62 89.56 5.44 -56.49 -0.31 89.26 16 14 O -0.97 -34.36 17.39 -127.65 -2.22 -36.58 16 15 O -0.99 -40.27 18.08 -127.65 -2.31 -42.57 16 16 C -0.59 -23.05 5.66 71.98 0.41 -22.64 16 17 C -0.01 -0.61 4.05 29.85 0.12 -0.49 16 18 C -0.53 -30.58 9.66 25.60 0.25 -30.33 16 19 H 0.04 2.76 7.99 -2.91 -0.02 2.74 16 20 C 0.01 0.88 5.47 84.65 0.46 1.34 16 21 N -0.94 -58.27 13.96 21.45 0.30 -57.97 16 22 Si 0.93 44.03 27.47 68.60 1.88 45.91 16 23 H -0.25 -11.36 7.11 99.48 0.71 -10.65 16 24 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 25 H -0.25 -11.46 6.54 99.48 0.65 -10.81 16 26 C 0.50 10.90 6.01 87.66 0.53 11.42 16 27 N -0.83 -11.73 7.88 -173.54 -1.37 -13.10 16 28 O -0.57 -17.58 17.47 -3.04 -0.05 -17.63 16 29 H 0.08 0.56 7.32 -2.39 -0.02 0.54 16 30 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.08 0.54 5.76 -2.39 -0.01 0.53 16 32 H 0.13 2.23 7.13 -2.91 -0.02 2.21 16 33 H 0.13 2.21 8.06 -2.91 -0.02 2.19 16 34 H 0.13 1.89 8.06 -2.91 -0.02 1.87 16 35 H 0.14 1.75 8.06 -2.91 -0.02 1.73 16 36 H 0.14 1.81 7.95 -2.91 -0.02 1.78 16 37 H 0.43 9.85 8.80 -96.74 -0.85 9.00 16 38 H 0.13 4.62 7.75 -2.39 -0.02 4.60 16 39 H 0.13 5.00 8.14 -2.39 -0.02 4.98 16 40 H 0.03 1.41 7.20 -2.39 -0.02 1.39 16 41 H 0.04 1.78 7.57 -2.38 -0.02 1.76 16 42 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 43 H 0.42 2.94 7.80 -92.70 -0.72 2.21 16 44 H 0.41 5.52 8.93 -92.71 -0.83 4.70 16 Total: -1.00 -82.02 376.91 -2.79 -84.81 By element: Atomic # 1 Polarization: 29.26 SS G_CDS: -1.40 Total: 27.85 kcal Atomic # 6 Polarization: -55.01 SS G_CDS: 3.45 Total: -51.56 kcal Atomic # 7 Polarization: -97.66 SS G_CDS: -1.83 Total: -99.49 kcal Atomic # 8 Polarization: -92.20 SS G_CDS: -4.58 Total: -96.78 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 1.88 Total: 45.91 kcal Atomic # 16 Polarization: 89.56 SS G_CDS: -0.31 Total: 89.26 kcal Total: -82.02 -2.79 -84.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490080181.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.955 kcal (2) G-P(sol) polarization free energy of solvation -82.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds