Wall clock time and date at job start Wed Apr 1 2020 00:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52699 * 1 3 3 H 1.09970 * 108.25128 * 2 1 4 4 C 1.50216 * 109.90415 * 242.11881 * 2 1 3 5 5 C 1.38586 * 118.51547 * 76.84258 * 4 2 1 6 6 C 1.38054 * 120.57553 * 180.02562 * 5 4 2 7 7 C 1.38285 * 119.65884 * 359.97438 * 6 5 4 8 8 C 1.37706 * 120.01178 * 359.90782 * 7 6 5 9 9 C 1.38328 * 121.37280 * 256.63310 * 4 2 1 10 10 O 1.36146 * 124.95949 * 359.82058 * 9 4 2 11 11 C 1.42714 * 119.69017 * 53.10010 * 10 9 4 12 12 C 1.54183 * 108.59242 * 271.78067 * 11 10 9 13 13 N 1.45717 * 107.73578 * 26.94016 * 12 11 10 14 14 S 1.66240 * 119.89143 * 243.80317 * 13 12 11 15 15 O 1.42099 * 106.39926 * 156.50413 * 14 13 12 16 16 O 1.42097 * 106.40474 * 23.58347 * 14 13 12 17 17 N 1.65605 * 107.21710 * 270.04346 * 14 13 12 18 18 C 1.46502 * 119.99873 * 270.00175 * 17 14 13 19 19 C 1.46499 * 119.99782 * 90.00148 * 17 14 13 20 20 C 1.50701 * 109.46992 * 94.99996 * 19 17 14 21 21 H 1.07998 * 120.00129 * 0.02562 * 20 19 17 22 22 C 1.37880 * 119.99861 * 179.97438 * 20 19 17 23 23 N 1.31512 * 119.99594 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 119.99875 * 0.02562 * 22 20 19 25 25 H 1.48504 * 109.47061 * 90.00257 * 24 22 20 26 26 H 1.48497 * 109.46906 * 209.99430 * 24 22 20 27 27 H 1.48498 * 109.47403 * 329.99876 * 24 22 20 28 28 H 1.08999 * 109.47347 * 301.18884 * 1 2 3 29 29 H 1.09000 * 109.46584 * 61.18631 * 1 2 3 30 30 H 1.08998 * 109.47321 * 181.18265 * 1 2 3 31 31 H 1.08016 * 119.70876 * 0.14264 * 5 4 2 32 32 H 1.08016 * 120.18785 * 180.02562 * 6 5 4 33 33 H 1.07992 * 119.97419 * 179.97438 * 7 6 5 34 34 H 1.08004 * 119.69650 * 179.97438 * 8 7 6 35 35 H 1.08902 * 109.78234 * 32.03420 * 11 10 9 36 36 H 1.09093 * 109.47284 * 152.18853 * 11 10 9 37 37 H 1.09844 * 108.96556 * 268.90833 * 12 11 10 38 38 H 1.08506 * 110.84735 * 149.66785 * 12 11 10 39 39 H 1.08992 * 109.47370 * 269.99952 * 18 17 14 40 40 H 1.09001 * 109.47101 * 30.00374 * 18 17 14 41 41 H 1.09006 * 109.46957 * 149.99784 * 18 17 14 42 42 H 1.09002 * 109.47391 * 334.99987 * 19 17 14 43 43 H 1.09001 * 109.46813 * 215.00043 * 19 17 14 44 44 H 0.97002 * 119.99739 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5270 0.0000 0.0000 3 1 1.8714 1.0444 0.0000 4 6 2.0384 -0.6605 -1.2485 5 6 2.0030 0.0526 -2.4363 6 6 2.4616 -0.5133 -3.6090 7 6 2.9609 -1.8028 -3.5970 8 6 3.0007 -2.5151 -2.4192 9 6 2.5403 -1.9494 -1.2275 10 8 2.6285 -2.7342 -0.1185 11 6 1.4709 -2.9518 0.6873 12 6 1.3863 -1.8283 1.7398 13 7 2.0560 -0.6557 1.1921 14 16 3.4242 -0.0638 1.9277 15 8 4.1327 0.6621 0.9326 16 8 3.9916 -1.1474 2.6510 17 7 2.9337 1.0453 3.0554 18 6 2.7884 2.4544 2.6819 19 6 2.6451 0.6173 4.4265 20 6 3.8674 0.8210 5.2841 21 1 4.7689 1.2289 4.8513 22 6 3.8345 0.4876 6.6216 23 7 4.9011 0.6659 7.3700 24 14 2.2751 -0.2172 7.3703 25 1 2.2969 -1.6978 7.2570 26 1 2.1954 0.1684 8.8021 27 1 1.0933 0.3173 6.6472 28 1 -0.3634 0.5322 0.8791 29 1 -0.3632 0.4953 -0.9005 30 1 -0.3634 -1.0274 0.0212 31 1 1.6150 1.0606 -2.4441 32 1 2.4315 0.0483 -4.5312 33 1 3.3206 -2.2507 -4.5116 34 1 3.3913 -3.5221 -2.4158 35 1 0.5795 -2.9433 0.0619 36 1 1.5533 -3.9171 1.1890 37 1 1.9152 -2.1489 2.6476 38 1 0.3538 -1.6198 2.0000 39 1 3.7321 2.9737 2.8485 40 1 2.5158 2.5250 1.6289 41 1 2.0089 2.9131 3.2905 42 1 2.3721 -0.4380 4.4279 43 1 1.8193 1.2068 4.8249 44 1 4.8781 0.4310 8.3109 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595413570.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:01:09 Heat of formation + Delta-G solvation = -62.781484 kcal Electronic energy + Delta-G solvation = -29590.430275 eV Core-core repulsion = 25635.832289 eV Total energy + Delta-G solvation = -3954.597986 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.58328 -37.68345 -36.78364 -36.46665 -35.65188 -35.16769 -32.47997 -32.39813 -30.73182 -29.13058 -28.50426 -28.33427 -25.22690 -24.69706 -22.82891 -22.00133 -21.70580 -20.98516 -18.91139 -17.69123 -17.51699 -17.03476 -16.79690 -16.52558 -15.97699 -15.35780 -15.22802 -14.84702 -14.71051 -14.27867 -13.92796 -13.79734 -13.61100 -13.28270 -13.24294 -12.94911 -12.64851 -12.50334 -12.42078 -12.28650 -11.96002 -11.81931 -11.76242 -11.54223 -11.38196 -11.36643 -11.26040 -11.05281 -10.85366 -10.67864 -10.47164 -10.28654 -10.26170 -9.57617 -9.12422 -8.90710 -8.60795 -8.40308 -8.13062 -6.09094 -4.08636 1.02888 1.19128 1.25021 3.21740 3.25509 3.29036 3.31999 3.39751 3.72510 4.02692 4.36317 4.47986 4.61636 4.67129 4.77426 4.89870 4.93366 4.99092 5.10040 5.17989 5.22230 5.23766 5.33738 5.35740 5.43370 5.44559 5.57423 5.64942 5.68271 5.85434 5.90517 5.95041 6.03050 6.17216 6.24952 6.36589 6.37994 6.40671 6.59343 6.66494 6.77371 7.03189 7.35866 7.55920 7.56595 8.47963 8.95993 9.49323 11.04632 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.020621 B = 0.004008 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.534567 B = 6984.606396 C = 7224.159158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.192 3.808 3 H 0.094 0.906 4 C -0.133 4.133 5 C -0.090 4.090 6 C -0.137 4.137 7 C -0.102 4.102 8 C -0.143 4.143 9 C 0.126 3.874 10 O -0.320 6.320 11 C 0.058 3.942 12 C 0.081 3.919 13 N -0.994 5.994 14 S 2.777 3.223 15 O -0.982 6.982 16 O -0.951 6.951 17 N -0.993 5.993 18 C 0.108 3.892 19 C 0.229 3.771 20 C -0.533 4.533 21 H 0.077 0.923 22 C 0.073 3.927 23 N -0.894 5.894 24 Si 0.872 3.128 25 H -0.272 1.272 26 H -0.283 1.283 27 H -0.265 1.265 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.126 0.874 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.128 0.872 35 H 0.060 0.940 36 H 0.108 0.892 37 H 0.101 0.899 38 H 0.083 0.917 39 H 0.055 0.945 40 H 0.052 0.948 41 H 0.067 0.933 42 H 0.027 0.973 43 H 0.033 0.967 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.548 -3.357 -19.801 24.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.084 3.916 3 H 0.112 0.888 4 C -0.135 4.135 5 C -0.108 4.108 6 C -0.155 4.155 7 C -0.121 4.121 8 C -0.161 4.161 9 C 0.082 3.918 10 O -0.235 6.235 11 C -0.019 4.019 12 C -0.045 4.045 13 N -0.830 5.830 14 S 2.786 3.214 15 O -0.966 6.966 16 O -0.934 6.934 17 N -0.835 5.835 18 C -0.039 4.039 19 C 0.105 3.895 20 C -0.572 4.572 21 H 0.095 0.905 22 C -0.130 4.130 23 N -0.532 5.532 24 Si 0.699 3.301 25 H -0.197 1.197 26 H -0.209 1.209 27 H -0.190 1.190 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.144 0.856 32 H 0.143 0.857 33 H 0.143 0.857 34 H 0.146 0.854 35 H 0.079 0.921 36 H 0.126 0.874 37 H 0.120 0.880 38 H 0.101 0.899 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.086 0.914 42 H 0.044 0.956 43 H 0.051 0.949 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.420 -3.715 -19.690 23.574 hybrid contribution -1.194 -0.135 0.708 1.395 sum -13.614 -3.850 -18.982 23.675 Atomic orbital electron populations 1.22015 0.93180 1.02821 1.02917 1.19352 0.94769 0.95771 0.81658 0.88816 1.20366 1.03124 0.93835 0.96193 1.20853 0.99094 0.99462 0.91428 1.21042 1.00637 0.95749 0.98114 1.20908 0.99032 0.94704 0.97410 1.21266 1.03335 1.00765 0.90748 1.18767 0.97994 0.89177 0.85860 1.85852 1.35303 1.65547 1.36766 1.23488 0.87147 0.99186 0.92089 1.22082 0.99596 0.84957 0.97893 1.58115 1.48171 1.39144 1.37540 1.02361 0.73186 0.73366 0.72475 1.93546 1.69428 1.73548 1.60070 1.93624 1.73874 1.53735 1.72193 1.57559 1.84988 1.17986 1.22937 1.21248 1.02210 0.82053 0.98351 1.19446 0.97671 0.94634 0.77730 1.21371 0.98564 1.43453 0.93774 0.90482 1.24879 0.96197 0.94977 0.96918 1.69898 1.28469 1.47942 1.06915 0.86919 0.84005 0.80255 0.78935 1.19730 1.20910 1.18984 0.91172 0.91084 0.92039 0.85602 0.85729 0.85691 0.85439 0.92125 0.87412 0.88047 0.89851 0.92642 0.92981 0.91388 0.95566 0.94904 0.92493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 8.54 37.00 0.32 -1.04 16 2 C 0.19 2.44 2.22 -69.76 -0.15 2.29 16 3 H 0.09 1.19 7.10 -51.38 -0.37 0.83 16 4 C -0.13 -1.76 5.10 -104.69 -0.53 -2.29 16 5 C -0.09 -1.00 9.47 -39.52 -0.37 -1.37 16 6 C -0.14 -1.37 10.06 -39.63 -0.40 -1.77 16 7 C -0.10 -1.06 10.03 -39.76 -0.40 -1.46 16 8 C -0.14 -1.77 9.84 -39.22 -0.39 -2.15 16 9 C 0.13 1.81 5.98 -38.99 -0.23 1.58 16 10 O -0.32 -4.87 9.35 -20.20 -0.19 -5.05 16 11 C 0.06 0.67 6.68 37.78 0.25 0.92 16 12 C 0.08 1.06 5.72 -3.85 -0.02 1.04 16 13 N -0.99 -15.30 2.29 -108.68 -0.25 -15.55 16 14 S 2.78 57.42 5.95 -107.50 -0.64 56.78 16 15 O -0.98 -21.64 16.13 -57.17 -0.92 -22.56 16 16 O -0.95 -23.39 15.66 -57.17 -0.90 -24.28 16 17 N -0.99 -20.43 3.23 -123.05 -0.40 -20.83 16 18 C 0.11 1.82 10.33 59.85 0.62 2.44 16 19 C 0.23 5.36 4.19 -5.19 -0.02 5.33 16 20 C -0.53 -15.33 9.94 -34.44 -0.34 -15.67 16 21 H 0.08 2.46 8.06 -52.49 -0.42 2.04 16 22 C 0.07 2.12 5.47 -17.82 -0.10 2.03 16 23 N -0.89 -27.62 13.96 55.43 0.77 -26.84 16 24 Si 0.87 20.82 27.47 -169.99 -4.67 16.15 16 25 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 27 H -0.27 -5.80 6.54 56.52 0.37 -5.43 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.52 8.05 -51.93 -0.42 0.10 16 30 H 0.06 0.52 6.26 -51.93 -0.33 0.19 16 31 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 32 H 0.12 0.91 8.06 -52.48 -0.42 0.48 16 33 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 34 H 0.13 1.40 8.06 -52.48 -0.42 0.98 16 35 H 0.06 0.56 7.16 -51.98 -0.37 0.19 16 36 H 0.11 1.03 8.15 -51.88 -0.42 0.61 16 37 H 0.10 1.51 6.94 -51.45 -0.36 1.15 16 38 H 0.08 0.82 7.30 -52.21 -0.38 0.44 16 39 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.05 0.72 7.39 -51.93 -0.38 0.34 16 41 H 0.07 1.01 7.94 -51.93 -0.41 0.60 16 42 H 0.03 0.61 7.04 -51.93 -0.37 0.24 16 43 H 0.03 0.72 7.02 -51.93 -0.36 0.36 16 44 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 363.57 15.07 5.48 5.48 Total: -1.00 -37.03 363.57 -9.78 -46.81 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -6.29 Total: 0.03 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: -1.78 Total: -10.13 kcal Atomic # 7 Polarization: -63.35 SS G_CDS: 0.13 Total: -63.22 kcal Atomic # 8 Polarization: -49.89 SS G_CDS: -2.01 Total: -51.90 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.67 Total: 16.15 kcal Atomic # 16 Polarization: 57.42 SS G_CDS: -0.64 Total: 56.78 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -37.03 -9.78 -46.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595413570.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.969 kcal (2) G-P(sol) polarization free energy of solvation -37.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds