Wall clock time and date at job start Wed Apr 1 2020 00:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52699 * 1 3 3 H 1.09970 * 108.25128 * 2 1 4 4 C 1.50216 * 109.90415 * 242.11881 * 2 1 3 5 5 C 1.38586 * 118.51547 * 76.84258 * 4 2 1 6 6 C 1.38054 * 120.57553 * 180.02562 * 5 4 2 7 7 C 1.38285 * 119.65884 * 359.97438 * 6 5 4 8 8 C 1.37706 * 120.01178 * 359.90782 * 7 6 5 9 9 C 1.38328 * 121.37280 * 256.63310 * 4 2 1 10 10 O 1.36146 * 124.95949 * 359.82058 * 9 4 2 11 11 C 1.42714 * 119.69017 * 53.10010 * 10 9 4 12 12 C 1.54183 * 108.59242 * 271.78067 * 11 10 9 13 13 N 1.45717 * 107.73578 * 26.94016 * 12 11 10 14 14 S 1.66240 * 119.89143 * 243.80317 * 13 12 11 15 15 O 1.42099 * 106.39926 * 156.50413 * 14 13 12 16 16 O 1.42097 * 106.40474 * 23.58347 * 14 13 12 17 17 N 1.65605 * 107.21710 * 270.04346 * 14 13 12 18 18 C 1.46502 * 119.99873 * 270.00175 * 17 14 13 19 19 C 1.46499 * 119.99782 * 90.00148 * 17 14 13 20 20 C 1.50701 * 109.46992 * 94.99996 * 19 17 14 21 21 H 1.07998 * 120.00129 * 0.02562 * 20 19 17 22 22 C 1.37880 * 119.99861 * 179.97438 * 20 19 17 23 23 N 1.31512 * 119.99594 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 119.99875 * 0.02562 * 22 20 19 25 25 H 1.48504 * 109.47061 * 90.00257 * 24 22 20 26 26 H 1.48497 * 109.46906 * 209.99430 * 24 22 20 27 27 H 1.48498 * 109.47403 * 329.99876 * 24 22 20 28 28 H 1.08999 * 109.47347 * 301.18884 * 1 2 3 29 29 H 1.09000 * 109.46584 * 61.18631 * 1 2 3 30 30 H 1.08998 * 109.47321 * 181.18265 * 1 2 3 31 31 H 1.08016 * 119.70876 * 0.14264 * 5 4 2 32 32 H 1.08016 * 120.18785 * 180.02562 * 6 5 4 33 33 H 1.07992 * 119.97419 * 179.97438 * 7 6 5 34 34 H 1.08004 * 119.69650 * 179.97438 * 8 7 6 35 35 H 1.08902 * 109.78234 * 32.03420 * 11 10 9 36 36 H 1.09093 * 109.47284 * 152.18853 * 11 10 9 37 37 H 1.09844 * 108.96556 * 268.90833 * 12 11 10 38 38 H 1.08506 * 110.84735 * 149.66785 * 12 11 10 39 39 H 1.08992 * 109.47370 * 269.99952 * 18 17 14 40 40 H 1.09001 * 109.47101 * 30.00374 * 18 17 14 41 41 H 1.09006 * 109.46957 * 149.99784 * 18 17 14 42 42 H 1.09002 * 109.47391 * 334.99987 * 19 17 14 43 43 H 1.09001 * 109.46813 * 215.00043 * 19 17 14 44 44 H 0.97002 * 119.99739 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5270 0.0000 0.0000 3 1 1.8714 1.0444 0.0000 4 6 2.0384 -0.6605 -1.2485 5 6 2.0030 0.0526 -2.4363 6 6 2.4616 -0.5133 -3.6090 7 6 2.9609 -1.8028 -3.5970 8 6 3.0007 -2.5151 -2.4192 9 6 2.5403 -1.9494 -1.2275 10 8 2.6285 -2.7342 -0.1185 11 6 1.4709 -2.9518 0.6873 12 6 1.3863 -1.8283 1.7398 13 7 2.0560 -0.6557 1.1921 14 16 3.4242 -0.0638 1.9277 15 8 4.1327 0.6621 0.9326 16 8 3.9916 -1.1474 2.6510 17 7 2.9337 1.0453 3.0554 18 6 2.7884 2.4544 2.6819 19 6 2.6451 0.6173 4.4265 20 6 3.8674 0.8210 5.2841 21 1 4.7689 1.2289 4.8513 22 6 3.8345 0.4876 6.6216 23 7 4.9011 0.6659 7.3700 24 14 2.2751 -0.2172 7.3703 25 1 2.2969 -1.6978 7.2570 26 1 2.1954 0.1684 8.8021 27 1 1.0933 0.3173 6.6472 28 1 -0.3634 0.5322 0.8791 29 1 -0.3632 0.4953 -0.9005 30 1 -0.3634 -1.0274 0.0212 31 1 1.6150 1.0606 -2.4441 32 1 2.4315 0.0483 -4.5312 33 1 3.3206 -2.2507 -4.5116 34 1 3.3913 -3.5221 -2.4158 35 1 0.5795 -2.9433 0.0619 36 1 1.5533 -3.9171 1.1890 37 1 1.9152 -2.1489 2.6476 38 1 0.3538 -1.6198 2.0000 39 1 3.7321 2.9737 2.8485 40 1 2.5158 2.5250 1.6289 41 1 2.0089 2.9131 3.2905 42 1 2.3721 -0.4380 4.4279 43 1 1.8193 1.2068 4.8249 44 1 4.8781 0.4310 8.3109 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595413570.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:01:08 Heat of formation + Delta-G solvation = -90.405057 kcal Electronic energy + Delta-G solvation = -29591.628123 eV Core-core repulsion = 25635.832289 eV Total energy + Delta-G solvation = -3955.795834 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.50228 -38.66288 -38.34371 -37.55974 -37.32413 -36.90441 -34.53586 -33.40116 -31.60438 -30.33144 -29.93141 -29.37526 -26.86746 -25.57494 -23.96576 -23.62258 -22.70093 -21.96055 -20.22736 -19.27286 -18.85812 -18.63360 -18.30214 -17.66814 -17.12292 -16.78865 -16.27918 -16.19215 -15.71617 -15.56854 -15.39838 -14.84412 -14.68067 -14.61203 -14.41526 -14.24808 -14.17058 -14.11743 -13.45951 -13.37984 -13.25095 -13.19082 -13.05656 -12.99114 -12.90193 -12.63520 -12.39643 -12.30391 -12.27617 -12.12458 -11.98160 -11.75532 -11.72674 -11.19916 -10.79748 -10.22790 -9.85565 -9.73738 -9.27729 -8.30306 -6.37508 -0.52477 0.33662 0.39831 1.36043 1.41543 1.49886 1.92561 2.35203 2.44256 2.51819 2.84963 3.03187 3.25586 3.60829 3.64349 3.84486 3.94993 3.99452 4.08060 4.20226 4.26393 4.32533 4.47583 4.52383 4.54449 4.58147 4.65048 4.67372 4.75119 4.77899 4.82173 4.91401 4.99431 5.06267 5.11252 5.23768 5.29831 5.42588 5.43748 5.46828 5.57959 5.61095 5.78906 5.93986 6.28155 6.65060 6.65214 7.25607 8.87794 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.020621 B = 0.004008 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.534567 B = 6984.606396 C = 7224.159158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.184 3.816 3 H 0.091 0.909 4 C -0.152 4.152 5 C -0.096 4.096 6 C -0.135 4.135 7 C -0.102 4.102 8 C -0.162 4.162 9 C 0.095 3.905 10 O -0.351 6.351 11 C 0.054 3.946 12 C 0.074 3.926 13 N -0.982 5.982 14 S 2.785 3.215 15 O -1.007 7.007 16 O -1.004 7.004 17 N -0.999 5.999 18 C 0.098 3.902 19 C 0.236 3.764 20 C -0.549 4.549 21 H 0.020 0.980 22 C 0.004 3.996 23 N -0.950 5.950 24 Si 0.948 3.052 25 H -0.267 1.267 26 H -0.279 1.279 27 H -0.222 1.222 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.069 0.931 31 H 0.150 0.850 32 H 0.156 0.844 33 H 0.152 0.848 34 H 0.129 0.871 35 H 0.088 0.912 36 H 0.122 0.878 37 H 0.076 0.924 38 H 0.123 0.877 39 H 0.032 0.968 40 H 0.084 0.916 41 H 0.094 0.906 42 H 0.034 0.966 43 H 0.062 0.938 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.794 -3.256 -21.663 28.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.078 3.922 3 H 0.109 0.891 4 C -0.154 4.154 5 C -0.115 4.115 6 C -0.153 4.153 7 C -0.120 4.120 8 C -0.181 4.181 9 C 0.051 3.949 10 O -0.267 6.267 11 C -0.022 4.022 12 C -0.052 4.052 13 N -0.822 5.822 14 S 2.795 3.205 15 O -0.990 6.990 16 O -0.987 6.987 17 N -0.841 5.841 18 C -0.047 4.047 19 C 0.111 3.889 20 C -0.588 4.588 21 H 0.038 0.962 22 C -0.193 4.193 23 N -0.590 5.590 24 Si 0.769 3.231 25 H -0.192 1.192 26 H -0.204 1.204 27 H -0.145 1.145 28 H 0.098 0.902 29 H 0.111 0.889 30 H 0.088 0.912 31 H 0.168 0.832 32 H 0.174 0.826 33 H 0.170 0.830 34 H 0.147 0.853 35 H 0.106 0.894 36 H 0.140 0.860 37 H 0.095 0.905 38 H 0.141 0.859 39 H 0.051 0.949 40 H 0.103 0.897 41 H 0.112 0.888 42 H 0.052 0.948 43 H 0.080 0.920 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -16.664 -3.586 -21.587 27.505 hybrid contribution 0.245 -0.141 1.128 1.162 sum -16.419 -3.727 -20.460 26.497 Atomic orbital electron populations 1.22011 0.89821 1.03843 1.04447 1.19704 0.97254 0.95106 0.80158 0.89118 1.20550 1.03934 0.93774 0.97166 1.21218 0.98821 1.00391 0.91038 1.21471 0.99150 0.95651 0.99040 1.21285 0.98137 0.94928 0.97638 1.21493 1.03902 1.01420 0.91256 1.19121 0.99627 0.90040 0.86139 1.85810 1.37216 1.66072 1.37577 1.23692 0.87442 0.99204 0.91898 1.22388 1.00955 0.84446 0.97372 1.57592 1.46986 1.39618 1.37959 1.01754 0.74003 0.72614 0.72104 1.93493 1.71070 1.74013 1.60447 1.93548 1.76056 1.55549 1.73556 1.57478 1.85121 1.19564 1.21891 1.21511 1.02069 0.80136 1.00973 1.19268 0.95693 0.95625 0.78281 1.21710 0.98897 1.43178 0.95027 0.96181 1.26036 1.00745 0.95185 0.97357 1.70090 1.31719 1.49721 1.07504 0.85723 0.79797 0.79403 0.78162 1.19195 1.20438 1.14472 0.90242 0.88933 0.91235 0.83194 0.82610 0.83006 0.85265 0.89389 0.86045 0.90539 0.85873 0.94885 0.89720 0.88756 0.94773 0.92008 0.92290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 8.54 71.88 0.61 -1.38 16 2 C 0.18 4.26 2.22 44.09 0.10 4.36 16 3 H 0.09 2.11 7.10 -1.87 -0.01 2.10 16 4 C -0.15 -3.76 5.10 -19.91 -0.10 -3.86 16 5 C -0.10 -1.87 9.47 22.31 0.21 -1.66 16 6 C -0.14 -2.29 10.06 22.24 0.22 -2.06 16 7 C -0.10 -1.89 10.03 22.16 0.22 -1.67 16 8 C -0.16 -3.91 9.84 22.50 0.22 -3.69 16 9 C 0.09 2.66 5.98 22.65 0.14 2.80 16 10 O -0.35 -10.71 9.35 -95.21 -0.89 -11.60 16 11 C 0.05 1.17 6.68 72.38 0.48 1.65 16 12 C 0.07 1.80 5.72 86.93 0.50 2.30 16 13 N -0.98 -29.07 2.29 -497.76 -1.14 -30.21 16 14 S 2.78 117.30 5.95 -56.49 -0.34 116.96 16 15 O -1.01 -45.50 16.13 -128.00 -2.06 -47.57 16 16 O -1.00 -51.73 15.66 -128.00 -2.00 -53.73 16 17 N -1.00 -40.99 3.23 -543.22 -1.75 -42.74 16 18 C 0.10 3.24 10.33 127.77 1.32 4.56 16 19 C 0.24 10.88 4.19 85.63 0.36 11.24 16 20 C -0.55 -32.71 9.94 25.60 0.25 -32.45 16 21 H 0.02 1.36 8.06 -2.91 -0.02 1.34 16 22 C 0.00 0.25 5.47 84.66 0.46 0.72 16 23 N -0.95 -61.13 13.96 21.45 0.30 -60.83 16 24 Si 0.95 42.27 27.47 68.60 1.88 44.15 16 25 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 26 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 27 H -0.22 -8.34 6.54 99.48 0.65 -7.69 16 28 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.09 0.93 8.05 -2.39 -0.02 0.91 16 30 H 0.07 0.87 6.26 -2.39 -0.01 0.86 16 31 H 0.15 2.06 8.06 -2.90 -0.02 2.03 16 32 H 0.16 1.60 8.06 -2.90 -0.02 1.58 16 33 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 34 H 0.13 2.88 8.06 -2.91 -0.02 2.85 16 35 H 0.09 1.40 7.16 -2.44 -0.02 1.38 16 36 H 0.12 2.20 8.15 -2.34 -0.02 2.18 16 37 H 0.08 2.25 6.94 -1.94 -0.01 2.24 16 38 H 0.12 1.97 7.30 -2.65 -0.02 1.95 16 39 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.08 2.20 7.39 -2.39 -0.02 2.19 16 41 H 0.09 2.59 7.94 -2.38 -0.02 2.57 16 42 H 0.03 1.53 7.04 -2.39 -0.02 1.52 16 43 H 0.06 2.51 7.02 -2.39 -0.02 2.50 16 44 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 Total: -1.00 -87.40 363.57 -0.05 -87.45 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: 0.95 Total: 17.28 kcal Atomic # 6 Polarization: -24.15 SS G_CDS: 5.00 Total: -19.15 kcal Atomic # 7 Polarization: -131.19 SS G_CDS: -2.59 Total: -133.78 kcal Atomic # 8 Polarization: -107.94 SS G_CDS: -4.96 Total: -112.90 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 1.88 Total: 44.15 kcal Atomic # 16 Polarization: 117.30 SS G_CDS: -0.34 Total: 116.96 kcal Total: -87.40 -0.05 -87.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595413570.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.951 kcal (2) G-P(sol) polarization free energy of solvation -87.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds