Wall clock time and date at job start Wed Apr 1 2020 00:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52712 * 1 3 3 H 1.09988 * 108.24806 * 2 1 4 4 C 1.50211 * 109.90041 * 117.82922 * 2 1 3 5 5 C 1.38604 * 118.47893 * 285.05296 * 4 2 1 6 6 C 1.38035 * 120.58209 * 180.02562 * 5 4 2 7 7 C 1.38283 * 119.66946 * 0.12852 * 6 5 4 8 8 C 1.37711 * 119.99692 * 359.92282 * 7 6 5 9 9 C 1.38303 * 121.43568 * 105.12283 * 4 2 1 10 10 O 1.36176 * 124.88896 * 359.55611 * 9 4 2 11 11 C 1.42779 * 119.46800 * 306.09981 * 10 9 4 12 12 C 1.54184 * 108.55376 * 88.13493 * 11 10 9 13 13 N 1.45726 * 107.69789 * 334.33958 * 12 11 10 14 14 S 1.66239 * 119.86444 * 114.96104 * 13 12 11 15 15 O 1.42096 * 106.40077 * 203.53851 * 14 13 12 16 16 O 1.42103 * 106.40093 * 336.45886 * 14 13 12 17 17 N 1.65601 * 107.21750 * 89.99787 * 14 13 12 18 18 C 1.46498 * 119.99949 * 269.99802 * 17 14 13 19 19 C 1.46498 * 120.00122 * 90.00077 * 17 14 13 20 20 C 1.50698 * 109.47356 * 94.99823 * 19 17 14 21 21 H 1.08003 * 119.99926 * 359.97438 * 20 19 17 22 22 C 1.37874 * 120.00270 * 180.02562 * 20 19 17 23 23 N 1.31518 * 119.99895 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00271 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46942 * 89.99767 * 24 22 20 26 26 H 1.48497 * 109.47238 * 209.99526 * 24 22 20 27 27 H 1.48495 * 109.46714 * 329.99774 * 24 22 20 28 28 H 1.08999 * 109.47195 * 178.77581 * 1 2 3 29 29 H 1.09001 * 109.46931 * 298.77938 * 1 2 3 30 30 H 1.08997 * 109.46929 * 58.77719 * 1 2 3 31 31 H 1.08000 * 119.71175 * 359.89968 * 5 4 2 32 32 H 1.08018 * 120.19589 * 180.02562 * 6 5 4 33 33 H 1.07995 * 119.99037 * 179.97438 * 7 6 5 34 34 H 1.08020 * 119.68328 * 179.86430 * 8 7 6 35 35 H 1.08927 * 109.69863 * 328.02461 * 11 10 9 36 36 H 1.09052 * 109.51497 * 207.79383 * 11 10 9 37 37 H 1.08491 * 110.81987 * 211.56398 * 12 11 10 38 38 H 1.09852 * 108.95856 * 92.35564 * 12 11 10 39 39 H 1.09002 * 109.47312 * 90.00312 * 18 17 14 40 40 H 1.08999 * 109.47139 * 209.99967 * 18 17 14 41 41 H 1.08995 * 109.47431 * 330.00064 * 18 17 14 42 42 H 1.09000 * 109.47560 * 215.00033 * 19 17 14 43 43 H 1.09002 * 109.46718 * 334.99941 * 19 17 14 44 44 H 0.96994 * 119.99894 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5271 0.0000 0.0000 3 1 1.8715 1.0446 0.0000 4 6 2.0384 -0.6594 1.2491 5 6 1.9659 0.0407 2.4431 6 6 2.4235 -0.5235 3.6169 7 6 2.9614 -1.7973 3.5999 8 6 3.0369 -2.4970 2.4162 9 6 2.5734 -1.9345 1.2244 10 8 2.6854 -2.7108 0.1112 11 6 1.5293 -2.9645 -0.6874 12 6 1.3970 -1.8375 -1.7312 13 7 2.0562 -0.6549 -1.1922 14 16 3.4127 -0.0505 -1.9393 15 8 4.1198 0.6869 -0.9517 16 8 3.9872 -1.1303 -2.6627 17 7 2.9022 1.0490 -3.0675 18 6 2.6090 0.6129 -4.4350 19 6 2.7437 2.4578 -2.6981 20 6 3.9973 3.2145 -3.0540 21 1 4.8291 2.6977 -3.5094 22 6 4.0828 4.5665 -2.7972 23 7 3.0701 5.1957 -2.2422 24 14 5.6365 5.5047 -3.2390 25 1 5.5221 6.0274 -4.6243 26 1 5.8158 6.6376 -2.2958 27 1 6.8067 4.5950 -3.1482 28 1 -0.3633 -1.0274 -0.0220 29 1 -0.3633 0.4948 0.9007 30 1 -0.3633 0.5327 -0.8788 31 1 1.5495 1.0371 2.4550 32 1 2.3636 0.0276 4.5440 33 1 3.3214 -2.2435 4.5151 34 1 3.4600 -3.4909 2.4084 35 1 0.6436 -2.9891 -0.0538 36 1 1.6407 -3.9230 -1.1954 37 1 0.3546 -1.6495 -1.9657 38 1 1.9105 -2.1428 -2.6531 39 1 1.5602 0.3251 -4.5077 40 1 2.8103 1.4299 -5.1279 41 1 3.2383 -0.2406 -4.6870 42 1 1.8974 2.8821 -3.2383 43 1 2.5652 2.5342 -1.6255 44 1 3.1303 6.1467 -2.0613 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595413571.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:01:11 Heat of formation + Delta-G solvation = -92.755483 kcal Electronic energy + Delta-G solvation = -29646.019504 eV Core-core repulsion = 25690.121747 eV Total energy + Delta-G solvation = -3955.897756 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.49600 -38.64585 -38.31008 -37.53131 -37.24836 -36.86743 -34.53484 -33.40931 -31.60028 -29.95100 -29.69427 -29.36710 -26.81683 -25.59750 -24.26397 -23.68287 -22.68404 -21.96715 -20.17753 -19.17924 -18.68382 -18.42355 -18.28609 -17.63082 -17.08207 -16.84024 -16.33997 -16.15773 -15.80359 -15.54058 -15.19792 -15.02438 -14.75469 -14.55052 -14.22940 -14.17420 -14.09415 -13.95811 -13.42836 -13.36687 -13.16409 -13.07820 -13.02148 -12.95840 -12.94171 -12.65280 -12.50886 -12.42768 -12.30985 -12.09367 -12.01681 -11.79890 -11.72977 -11.18782 -10.62251 -10.19921 -9.83681 -9.74708 -9.29254 -8.23389 -6.35197 -0.45644 0.32609 0.38378 1.36131 1.38707 1.49288 1.94775 2.36803 2.46753 2.54324 2.84604 3.07293 3.29940 3.61434 3.65763 3.89295 3.96506 4.07919 4.10780 4.19788 4.25691 4.31131 4.49122 4.52685 4.54828 4.64383 4.67433 4.69819 4.75642 4.84415 4.89036 5.00949 5.05452 5.10619 5.13245 5.20291 5.37936 5.41298 5.50251 5.56970 5.62853 5.69894 5.88477 5.95431 6.07519 6.63766 6.71879 7.33582 8.84127 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014191 B = 0.004546 C = 0.003992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.637099 B = 6157.579131 C = 7012.638989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.186 3.814 3 H 0.067 0.933 4 C -0.148 4.148 5 C -0.105 4.105 6 C -0.135 4.135 7 C -0.101 4.101 8 C -0.156 4.156 9 C 0.098 3.902 10 O -0.347 6.347 11 C 0.051 3.949 12 C 0.075 3.925 13 N -0.983 5.983 14 S 2.786 3.214 15 O -1.006 7.006 16 O -1.003 7.003 17 N -1.004 6.004 18 C 0.087 3.913 19 C 0.275 3.725 20 C -0.553 4.553 21 H 0.046 0.954 22 C 0.016 3.984 23 N -0.920 5.920 24 Si 0.954 3.046 25 H -0.263 1.263 26 H -0.275 1.275 27 H -0.278 1.278 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.135 0.865 32 H 0.153 0.847 33 H 0.157 0.843 34 H 0.138 0.862 35 H 0.082 0.918 36 H 0.131 0.869 37 H 0.119 0.881 38 H 0.091 0.909 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.031 0.969 43 H 0.014 0.986 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.542 -15.957 7.216 20.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.080 3.920 3 H 0.085 0.915 4 C -0.151 4.151 5 C -0.123 4.123 6 C -0.152 4.152 7 C -0.118 4.118 8 C -0.175 4.175 9 C 0.054 3.946 10 O -0.263 6.263 11 C -0.025 4.025 12 C -0.051 4.051 13 N -0.822 5.822 14 S 2.797 3.203 15 O -0.990 6.990 16 O -0.987 6.987 17 N -0.846 5.846 18 C -0.058 4.058 19 C 0.152 3.848 20 C -0.592 4.592 21 H 0.065 0.935 22 C -0.184 4.184 23 N -0.560 5.560 24 Si 0.778 3.222 25 H -0.188 1.188 26 H -0.200 1.200 27 H -0.203 1.203 28 H 0.098 0.902 29 H 0.102 0.898 30 H 0.090 0.910 31 H 0.153 0.847 32 H 0.171 0.829 33 H 0.175 0.825 34 H 0.156 0.844 35 H 0.101 0.899 36 H 0.148 0.852 37 H 0.137 0.863 38 H 0.109 0.891 39 H 0.096 0.904 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.049 0.951 43 H 0.032 0.968 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.543 -16.112 7.330 20.110 hybrid contribution 0.581 1.128 -0.445 1.345 sum -8.962 -14.984 6.885 18.768 Atomic orbital electron populations 1.21960 0.90033 1.03895 1.03916 1.19515 0.97081 0.94452 0.80981 0.91469 1.20480 1.03725 0.94315 0.96563 1.21176 0.99451 1.00015 0.91667 1.21432 0.99114 0.96077 0.98626 1.21301 0.97922 0.94639 0.97972 1.21520 1.03479 1.01566 0.90900 1.19012 0.99358 0.89781 0.86418 1.85818 1.36614 1.66523 1.37340 1.23766 0.87433 0.99143 0.92199 1.22419 1.01097 0.83735 0.97814 1.57574 1.47865 1.39005 1.37786 1.01668 0.73983 0.72004 0.72658 1.93548 1.71191 1.73182 1.61042 1.93473 1.76091 1.55333 1.73796 1.57619 1.84569 1.20102 1.22297 1.21595 1.01447 1.00727 0.82011 1.18600 0.96149 0.75465 0.94618 1.21798 1.01801 0.94400 1.41218 0.93524 1.25691 0.99624 0.98326 0.94713 1.69988 1.32197 1.10477 1.43304 0.85627 0.79554 0.78149 0.78846 1.18753 1.20047 1.20341 0.90195 0.89758 0.90981 0.84685 0.82900 0.82544 0.84416 0.89942 0.85162 0.86311 0.89098 0.90440 0.90977 0.90978 0.95085 0.96786 0.92246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 8.55 71.89 0.61 -2.33 16 2 C 0.19 5.73 2.24 44.10 0.10 5.83 16 3 H 0.07 2.52 7.16 -1.86 -0.01 2.50 16 4 C -0.15 -4.52 5.11 -19.91 -0.10 -4.62 16 5 C -0.10 -2.79 9.40 22.31 0.21 -2.58 16 6 C -0.13 -2.97 10.06 22.23 0.22 -2.74 16 7 C -0.10 -2.14 10.03 22.16 0.22 -1.92 16 8 C -0.16 -4.01 9.84 22.50 0.22 -3.79 16 9 C 0.10 2.99 5.96 22.64 0.13 3.12 16 10 O -0.35 -10.52 9.35 -95.56 -0.89 -11.41 16 11 C 0.05 1.04 6.75 72.38 0.49 1.53 16 12 C 0.07 1.70 5.71 86.93 0.50 2.19 16 13 N -0.98 -31.73 2.26 -497.75 -1.13 -32.86 16 14 S 2.79 121.02 5.99 -56.49 -0.34 120.68 16 15 O -1.01 -53.53 16.01 -128.00 -2.05 -55.58 16 16 O -1.00 -44.67 15.30 -128.00 -1.96 -46.63 16 17 N -1.00 -43.38 3.23 -543.24 -1.75 -45.13 16 18 C 0.09 2.98 10.68 127.77 1.36 4.35 16 19 C 0.28 14.26 5.08 85.63 0.43 14.69 16 20 C -0.55 -32.19 9.38 25.60 0.24 -31.95 16 21 H 0.05 2.76 7.81 -2.91 -0.02 2.74 16 22 C 0.02 0.94 5.46 84.65 0.46 1.40 16 23 N -0.92 -54.00 13.29 21.45 0.28 -53.71 16 24 Si 0.95 45.35 29.54 68.60 2.03 47.38 16 25 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 26 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 27 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 28 H 0.08 1.32 6.46 -2.39 -0.02 1.31 16 29 H 0.08 1.57 7.99 -2.39 -0.02 1.55 16 30 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.14 3.25 8.06 -2.91 -0.02 3.23 16 32 H 0.15 2.42 8.06 -2.90 -0.02 2.39 16 33 H 0.16 2.23 8.06 -2.91 -0.02 2.20 16 34 H 0.14 3.05 8.06 -2.90 -0.02 3.03 16 35 H 0.08 1.32 7.35 -2.43 -0.02 1.30 16 36 H 0.13 1.95 8.15 -2.36 -0.02 1.93 16 37 H 0.12 1.80 7.22 -2.65 -0.02 1.78 16 38 H 0.09 2.13 6.96 -1.93 -0.01 2.12 16 39 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.07 2.53 8.07 -2.39 -0.02 2.51 16 41 H 0.07 2.34 7.02 -2.39 -0.02 2.33 16 42 H 0.03 1.61 8.11 -2.39 -0.02 1.59 16 43 H 0.01 0.79 7.28 -2.39 -0.02 0.77 16 44 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 Total: -1.00 -79.25 366.95 0.31 -78.94 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: 1.00 Total: 15.13 kcal Atomic # 6 Polarization: -21.92 SS G_CDS: 5.11 Total: -16.81 kcal Atomic # 7 Polarization: -129.11 SS G_CDS: -2.59 Total: -131.70 kcal Atomic # 8 Polarization: -108.72 SS G_CDS: -4.90 Total: -113.62 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Atomic # 16 Polarization: 121.02 SS G_CDS: -0.34 Total: 120.68 kcal Total: -79.25 0.31 -78.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595413571.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.811 kcal (2) G-P(sol) polarization free energy of solvation -79.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds