Wall clock time and date at job start Tue Mar 31 2020 23:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.46847 * 2 1 4 4 O 1.42898 * 109.47197 * 119.99719 * 2 1 3 5 5 C 1.35668 * 117.00180 * 90.00300 * 4 2 1 6 6 C 1.38918 * 119.69092 * 180.02562 * 5 4 2 7 7 C 1.38373 * 119.11813 * 179.97438 * 6 5 4 8 8 C 1.38827 * 118.48570 * 0.02562 * 7 6 5 9 9 S 1.76200 * 120.35987 * 179.97438 * 8 7 6 10 10 O 1.42106 * 106.39891 * 336.45466 * 9 8 7 11 11 O 1.42101 * 106.40092 * 203.53634 * 9 8 7 12 12 N 1.65596 * 107.21982 * 89.99254 * 9 8 7 13 13 C 1.46506 * 119.99779 * 65.31700 * 12 9 8 14 14 C 1.52998 * 109.47231 * 165.49663 * 13 12 9 15 15 C 1.50708 * 115.55017 * 56.73306 * 14 13 12 16 16 H 1.08000 * 119.99687 * 265.78617 * 15 14 13 17 17 C 1.37870 * 119.99918 * 85.78407 * 15 14 13 18 18 N 1.31515 * 119.99863 * 184.14591 * 17 15 14 19 19 Si 1.86803 * 120.00348 * 4.14654 * 17 15 14 20 20 H 1.48498 * 109.47081 * 93.88335 * 19 17 15 21 21 H 1.48497 * 109.47138 * 213.88629 * 19 17 15 22 22 H 1.48504 * 109.46943 * 333.88333 * 19 17 15 23 23 C 1.53005 * 117.49793 * 271.06358 * 14 13 12 24 24 C 1.52998 * 117.50115 * 202.40238 * 14 13 12 25 25 C 1.38052 * 119.28675 * 0.24909 * 8 7 6 26 26 N 1.31965 * 120.83169 * 359.45227 * 25 8 7 27 27 H 1.08998 * 109.47584 * 299.99752 * 1 2 3 28 28 H 1.08996 * 109.47061 * 60.00783 * 1 2 3 29 29 H 1.09003 * 109.46393 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47584 * 240.00248 * 2 1 3 31 31 H 1.08994 * 109.46838 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.46791 * 299.99904 * 3 2 1 33 33 H 1.08998 * 109.46826 * 59.99784 * 3 2 1 34 34 H 1.08005 * 120.44158 * 359.97438 * 6 5 4 35 35 H 1.08001 * 120.76394 * 180.02562 * 7 6 5 36 36 H 0.96997 * 120.00585 * 245.31258 * 12 9 8 37 37 H 1.09009 * 109.46866 * 285.49588 * 13 12 9 38 38 H 1.08997 * 109.47165 * 45.49452 * 13 12 9 39 39 H 0.96996 * 119.99997 * 179.97438 * 18 17 15 40 40 H 1.08992 * 117.49459 * 0.02562 * 23 14 13 41 41 H 1.09004 * 117.49654 * 145.01922 * 23 14 13 42 42 H 1.08993 * 117.50078 * 214.97919 * 24 14 13 43 43 H 1.09006 * 117.49741 * 359.97438 * 24 14 13 44 44 H 1.07998 * 119.58443 * 179.73353 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.2118 -2.0108 1.0654 6 6 2.6738 -2.7214 2.1660 7 6 2.8787 -4.0849 2.0495 8 6 2.6133 -4.6925 0.8298 9 16 2.8575 -6.4256 0.6264 10 8 3.8049 -6.8156 1.6111 11 8 3.0480 -6.6434 -0.7649 12 7 1.4340 -7.1715 1.0259 13 6 0.2371 -6.9503 0.2104 14 6 -0.8176 -8.0031 0.5566 15 6 -1.2220 -8.0656 2.0071 16 1 -0.7355 -8.7623 2.6737 17 6 -2.2128 -7.2334 2.4830 18 7 -2.5093 -7.2298 3.7643 19 14 -3.1341 -6.1109 1.3080 20 1 -4.3770 -6.7840 0.8525 21 1 -3.4826 -4.8457 2.0029 22 1 -2.2752 -5.8107 0.1344 23 6 -0.7869 -9.3178 -0.2255 24 6 -1.8947 -8.2951 -0.4901 25 6 2.1614 -3.9233 -0.2237 26 7 1.9701 -2.6255 -0.0804 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 2.8705 -2.2163 3.1002 35 1 3.2369 -4.6634 2.8882 36 1 1.3925 -7.7548 1.7997 37 1 -0.1617 -5.9562 0.4126 38 1 0.4969 -7.0298 -0.8452 39 1 -3.2061 -6.6440 4.0992 40 1 -0.0150 -9.4328 -0.9863 41 1 -1.0594 -10.2279 0.3090 42 1 -2.8955 -8.5327 -0.1297 43 1 -1.8520 -7.7367 -1.4253 44 1 1.9575 -4.3903 -1.1760 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601408290.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:39 Heat of formation + Delta-G solvation = -52.739435 kcal Electronic energy + Delta-G solvation = -28022.281395 eV Core-core repulsion = 24068.118865 eV Total energy + Delta-G solvation = -3954.162530 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.89532 -38.50402 -37.50089 -36.94538 -35.62836 -33.61935 -33.49103 -32.75660 -32.18955 -30.54151 -27.55748 -26.33709 -25.01927 -24.38139 -23.92699 -21.72396 -21.46588 -19.50490 -19.13536 -18.82212 -17.66824 -17.23652 -16.91201 -16.50262 -15.97341 -15.48369 -15.05048 -14.97470 -14.78499 -14.29790 -14.24838 -13.81250 -13.58863 -13.34119 -13.25583 -12.99100 -12.71246 -12.67952 -12.64765 -12.61088 -12.24061 -11.90461 -11.80287 -11.71670 -11.34172 -11.17870 -11.14325 -11.07844 -10.92366 -10.52619 -10.24818 -10.19297 -9.83925 -9.60308 -9.34514 -9.01420 -8.92669 -8.58048 -8.55978 -6.21475 -4.25773 0.50237 0.77462 1.02734 2.68445 3.18741 3.22267 3.31467 3.33904 3.49365 3.97215 4.01766 4.32598 4.38772 4.55276 4.66690 4.74945 4.79959 4.83546 4.94220 5.04819 5.10236 5.25235 5.34399 5.43684 5.49087 5.52040 5.54860 5.61779 5.72227 5.80600 5.92236 5.94586 5.94897 6.03469 6.15202 6.20171 6.42949 6.58131 6.67622 6.94311 7.04104 7.05853 7.49941 7.60739 7.63666 8.37914 8.80923 9.41787 10.89631 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010222 B = 0.004422 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2738.484487 B = 6329.757968 C = 7815.268719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.077 3.923 3 C -0.150 4.150 4 O -0.297 6.297 5 C 0.368 3.632 6 C -0.211 4.211 7 C 0.062 3.938 8 C -0.768 4.768 9 S 2.703 3.297 10 O -0.965 6.965 11 O -0.964 6.964 12 N -1.090 6.090 13 C 0.152 3.848 14 C -0.007 4.007 15 C -0.490 4.490 16 H 0.081 0.919 17 C 0.081 3.919 18 N -0.893 5.893 19 Si 0.874 3.126 20 H -0.278 1.278 21 H -0.295 1.295 22 H -0.255 1.255 23 C -0.177 4.177 24 C -0.196 4.196 25 C 0.243 3.757 26 N -0.553 5.553 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.093 0.907 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.150 0.850 35 H 0.160 0.840 36 H 0.428 0.572 37 H 0.055 0.945 38 H 0.059 0.941 39 H 0.265 0.735 40 H 0.076 0.924 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.075 0.925 44 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.481 12.668 -7.265 16.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.021 3.979 3 C -0.207 4.207 4 O -0.203 6.203 5 C 0.189 3.811 6 C -0.232 4.232 7 C 0.036 3.964 8 C -0.856 4.856 9 S 2.789 3.211 10 O -0.955 6.955 11 O -0.953 6.953 12 N -0.853 5.853 13 C 0.026 3.974 14 C -0.009 4.009 15 C -0.527 4.527 16 H 0.098 0.902 17 C -0.122 4.122 18 N -0.529 5.529 19 Si 0.702 3.298 20 H -0.204 1.204 21 H -0.222 1.222 22 H -0.179 1.179 23 C -0.214 4.214 24 C -0.234 4.234 25 C 0.084 3.916 26 N -0.277 5.277 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.111 0.889 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.168 0.832 35 H 0.178 0.822 36 H 0.266 0.734 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.095 0.905 41 H 0.106 0.894 42 H 0.107 0.893 43 H 0.093 0.907 44 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 8.861 13.233 -8.003 17.824 hybrid contribution -1.048 0.676 0.553 1.365 sum 7.812 13.909 -7.449 17.606 Atomic orbital electron populations 1.22239 0.94479 1.03353 1.02773 1.22464 0.94757 0.92849 0.87791 1.21912 1.01944 0.93713 1.03137 1.86329 1.79052 1.15822 1.39123 1.20087 0.86742 0.84557 0.89677 1.21151 1.08232 0.94487 0.99374 1.21170 0.86438 0.93571 0.95223 1.31961 1.21778 1.29229 1.02603 1.01589 0.72842 0.72870 0.73752 1.93566 1.59279 1.81526 1.61133 1.93561 1.85045 1.84341 1.32400 1.55120 1.26058 1.61261 1.42884 1.21026 0.84946 0.99565 0.91900 1.19479 0.94604 0.92970 0.93880 1.20205 1.20280 1.21935 0.90267 0.90150 1.24966 0.96442 0.96076 0.94727 1.69892 1.31320 1.38752 1.12949 0.86929 0.80863 0.80116 0.81860 1.20432 1.22250 1.17923 1.22887 1.00607 0.94783 1.03140 1.22991 0.95547 1.04792 1.00113 1.22233 0.84757 0.87422 0.97138 1.67370 1.23090 1.12558 1.24668 0.91830 0.90858 0.91696 0.88934 0.91805 0.90321 0.91538 0.83182 0.82246 0.73404 0.92692 0.92276 0.92499 0.90540 0.89415 0.89331 0.90680 0.80712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.73 9.53 37.16 0.35 -1.37 16 2 C 0.08 0.80 3.11 -26.73 -0.08 0.72 16 3 C -0.15 -1.14 9.56 37.16 0.36 -0.79 16 4 O -0.30 -3.77 9.76 -18.70 -0.18 -3.95 16 5 C 0.37 5.14 7.45 -17.12 -0.13 5.01 16 6 C -0.21 -2.74 10.04 -39.28 -0.39 -3.13 16 7 C 0.06 0.84 9.64 -39.31 -0.38 0.46 16 8 C -0.77 -11.25 5.97 -39.43 -0.24 -11.49 16 9 S 2.70 42.62 5.75 -107.50 -0.62 42.01 16 10 O -0.97 -16.78 17.36 -57.17 -0.99 -17.77 16 11 O -0.96 -16.56 16.76 -57.17 -0.96 -17.52 16 12 N -1.09 -18.76 5.92 -10.61 -0.06 -18.82 16 13 C 0.15 2.83 5.84 -4.04 -0.02 2.81 16 14 C -0.01 -0.14 0.98 -155.66 -0.15 -0.30 16 15 C -0.49 -12.36 8.67 -34.44 -0.30 -12.66 16 16 H 0.08 2.21 8.06 -52.49 -0.42 1.78 16 17 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 18 N -0.89 -25.58 13.96 55.43 0.77 -24.81 16 19 Si 0.87 20.41 24.94 -169.99 -4.24 16.17 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.30 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.26 -5.50 5.58 56.52 0.32 -5.18 16 23 C -0.18 -3.33 9.94 -26.69 -0.27 -3.60 16 24 C -0.20 -3.85 7.34 -26.69 -0.20 -4.04 16 25 C 0.24 3.48 10.68 -17.56 -0.19 3.30 16 26 N -0.55 -7.97 8.65 -13.33 -0.12 -8.09 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.09 1.01 6.98 -51.93 -0.36 0.65 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.15 1.56 8.06 -52.48 -0.42 1.14 16 35 H 0.16 1.86 7.71 -52.49 -0.40 1.46 16 36 H 0.43 7.52 8.06 -34.47 -0.28 7.24 16 37 H 0.05 1.04 6.87 -51.92 -0.36 0.68 16 38 H 0.06 0.99 7.72 -51.93 -0.40 0.59 16 39 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 40 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 41 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 42 H 0.09 1.83 7.06 -51.93 -0.37 1.46 16 43 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 44 H 0.18 2.17 7.61 -52.49 -0.40 1.77 16 LS Contribution 376.82 15.07 5.68 5.68 Total: -1.00 -31.60 376.82 -8.89 -40.49 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -6.44 Total: 9.63 kcal Atomic # 6 Polarization: -21.29 SS G_CDS: -1.73 Total: -23.02 kcal Atomic # 7 Polarization: -52.31 SS G_CDS: 0.60 Total: -51.72 kcal Atomic # 8 Polarization: -37.11 SS G_CDS: -2.13 Total: -39.24 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -4.24 Total: 16.17 kcal Atomic # 16 Polarization: 42.62 SS G_CDS: -0.62 Total: 42.01 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.60 -8.89 -40.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601408290.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.253 kcal (2) G-P(sol) polarization free energy of solvation -31.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds